On the Origin of Species by Charles Darwin
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Megafauna Extinction, Tree Species Range Reduction, and Carbon Storage in Amazonian Forests
Ecography 39: 194–203, 2016 doi: 10.1111/ecog.01587 © 2015 The Authors. Ecography © 2015 Nordic Society Oikos Subject Editor: Yadvinder Mahli. Editor-in-Chief: Nathan J. Sanders. Accepted 27 September 2015 Megafauna extinction, tree species range reduction, and carbon storage in Amazonian forests Christopher E. Doughty, Adam Wolf, Naia Morueta-Holme, Peter M. Jørgensen, Brody Sandel, Cyrille Violle, Brad Boyle, Nathan J. B. Kraft, Robert K. Peet, Brian J. Enquist, Jens-Christian Svenning, Stephen Blake and Mauro Galetti C. E. Doughty ([email protected]), Environmental Change Inst., School of Geography and the Environment, Univ. of Oxford, South Parks Road, Oxford, OX1 3QY, UK. – A. Wolf, Dept of Ecology and Evolutionary Biology, Princeton Univ., Princeton, NJ 08544, USA. – N. Morueta-Holme, Dept of Integrative Biology, Univ. of California – Berkeley, CA 94720, USA. – B. Sandel, J.-C. Svenning and NM-H, Section for Ecoinformatics and Biodiversity, Dept of Bioscience, Aarhus Univ., Ny Munkegade 114, DK-8000 Aarhus C, Denmark. – P. M. Jørgensen, Missouri Botanical Garden, PO Box 299, St Louis, MO 63166-0299, USA. – C. Violle, CEFE UMR 5175, CNRS – Univ. de Montpellier – Univ. Paul-Valéry Montpellier – EPHE – 1919 route de Mende, FR-34293 Montpellier Cedex 5, France. – B. Boyle and B. J. Enquist, Dept of Ecology and Evolutionary Biology, Univ. of Arizona, Tucson, AZ 85721, USA. – N. J. B. Kraft, Dept of Biology, Univ. of Maryland, College Park, MD 20742, USA. BJE also at: The Santa Fe inst., 1399 Hyde Park Road, Santa Fe, NM 87501, USA. – R. K. Peet, Dept of Biology, Univ. of North Carolina, Chapel Hill, NC 27599-3280, USA. -
Aristotle's Essentialism Revisited
University of Missouri, St. Louis IRL @ UMSL Theses Graduate Works 4-15-2013 Accommodating Species Evolution: Aristotle’s Essentialism Revisited Yin Zhang University of Missouri-St. Louis, [email protected] Follow this and additional works at: http://irl.umsl.edu/thesis Recommended Citation Zhang, Yin, "Accommodating Species Evolution: Aristotle’s Essentialism Revisited" (2013). Theses. 192. http://irl.umsl.edu/thesis/192 This Thesis is brought to you for free and open access by the Graduate Works at IRL @ UMSL. It has been accepted for inclusion in Theses by an authorized administrator of IRL @ UMSL. For more information, please contact [email protected]. Accommodating Species Evolution: Aristotle’s Essentialism Revisited by Yin Zhang B.A., Philosophy, Peking University, 2010 A Thesis Submitted to The Graduate School at the University of Missouri – St. Louis in partial fulfillment of the requirements for the degree Master of Arts in Philosophy May 2013 Advisory Committee Jon D. McGinnis, Ph.D. Chairperson Andrew G. Black, Ph.D. Berit O. Brogaard, Ph.D. Zhang, Yin, UMSL, 2013, p. i PREFACE In the fall of 2008 when I was a junior at Peking University, I attended a lecture series directed by Dr. Melville Y. Stewart on science and religion. Guest lecturers Dr. Alvin Plantinga, Dr. William L. Craig and Dr. Bruce Reichenbach have influenced my thinking on the relation between evolution and faith. In the fall of 2010 when I became a one-year visiting student at Calvin College in Michigan, I took a seminar directed by Dr. Kelly J. Clark on evolution and ethics. Having thought about evolution/faith and evolution/ethics, I signed up for Dr. -
Pleistocene Mammals and Paleoecology of the Western Amazon
PLEISTOCENE MAMMALS AND PALEOECOLOGY OF THE WESTERN AMAZON By ALCEU RANCY A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 1991 . To Cleusa, Bianca, Tiago, Thomas, and Nono Saul (Pistolin de Oro) . ACKNOWLEDGMENTS This work received strong support from John Eisenberg (chairman) and David Webb, both naturalists, humanists, and educators. Both were of special value, contributing more than the normal duties as members of my committee. Bruce MacFadden provided valuable insights at several periods of uncertainty. Ronald Labisky and Kent Redford also provided support and encouragement. My field work in the western Amazon was supported by several grants from the Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq) , and the Universidade Federal do Acre (UFAC) , Brazil. I also benefitted from grants awarded to Ken Campbell and Carl Frailey from the National Science Foundation (NSF) I thank Daryl Paul Domning, Jean Bocquentin Villanueva, Jonas Pereira de Souza Filho, Ken Campbell, Jose Carlos Rodrigues dos Santos, David Webb, Jorge Ferigolo, Carl Frailey, Ernesto Lavina, Michael Stokes, Marcondes Costa, and Ricardo Negri for sharing with me fruitful and adventurous field trips along the Amazonian rivers. The CNPq and the Universidade Federal do Acre, supported my visit to the. following institutions (and colleagues) to examine their vertebrate collections: iii . ; ; Universidade do Amazonas, Manaus -
La Brea and Beyond: the Paleontology of Asphalt-Preserved Biotas
La Brea and Beyond: The Paleontology of Asphalt-Preserved Biotas Edited by John M. Harris Natural History Museum of Los Angeles County Science Series 42 September 15, 2015 Cover Illustration: Pit 91 in 1915 An asphaltic bone mass in Pit 91 was discovered and exposed by the Los Angeles County Museum of History, Science and Art in the summer of 1915. The Los Angeles County Museum of Natural History resumed excavation at this site in 1969. Retrieval of the “microfossils” from the asphaltic matrix has yielded a wealth of insect, mollusk, and plant remains, more than doubling the number of species recovered by earlier excavations. Today, the current excavation site is 900 square feet in extent, yielding fossils that range in age from about 15,000 to about 42,000 radiocarbon years. Natural History Museum of Los Angeles County Archives, RLB 347. LA BREA AND BEYOND: THE PALEONTOLOGY OF ASPHALT-PRESERVED BIOTAS Edited By John M. Harris NO. 42 SCIENCE SERIES NATURAL HISTORY MUSEUM OF LOS ANGELES COUNTY SCIENTIFIC PUBLICATIONS COMMITTEE Luis M. Chiappe, Vice President for Research and Collections John M. Harris, Committee Chairman Joel W. Martin Gregory Pauly Christine Thacker Xiaoming Wang K. Victoria Brown, Managing Editor Go Online to www.nhm.org/scholarlypublications for open access to volumes of Science Series and Contributions in Science. Natural History Museum of Los Angeles County Los Angeles, California 90007 ISSN 1-891276-27-1 Published on September 15, 2015 Printed at Allen Press, Inc., Lawrence, Kansas PREFACE Rancho La Brea was a Mexican land grant Basin during the Late Pleistocene—sagebrush located to the west of El Pueblo de Nuestra scrub dotted with groves of oak and juniper with Sen˜ora la Reina de los A´ ngeles del Rı´ode riparian woodland along the major stream courses Porciu´ncula, now better known as downtown and with chaparral vegetation on the surrounding Los Angeles. -
From Fossils to Phylogenies Part 1: Mass Spectrometry
From Fossils to Phylogenies Part 1: Mass Spectrometry Written by: Baylee Goodwin, Dane Besser, Stephen A. Ramsey Dinosaur Vocabulary Words Chemistry Vocabulary Words Biology Vocabulary Words Fossilization Mass spectrometry Central Dogma of biology T. rex Mass-to-charge ratio Proteins Mastodon Ion Peptide Hadrosaur Relative abundance Protein Spectrum Collagen Background: Imagine it is time for your lunch break. You take your sandwich outside and you sit down to enjoy your lunch with a beautiful view of Montana’s Rocky Mountains. As you look up, you see what appears to be a bone sticking out of the side of a rock wall. That bone just so happens to be part of one of the best-preserved Tyrannosaurus rex fossils ever found. If you are Bob Harmon, a field crew chief of the Museum of the Rockies, that is exactly what happened. In the year 2000 Bob Harmon discovered a 68 million-year-old fossil, which is now named “B-Rex” after him. Tyrannosaurus rex lived 65 to 70 million years ago, in what is now the western parts of the United States. They were among the last of the large dinosaurs that lived on Earth. In certain rare cases, dinosaur bones were trapped in the Earth and were preserved until the present day, through a process called fossilization. Much of what we know about dinosaurs comes from the scientific study of the shape, appearance, composition, and location of fossils. Dinosaurs' bodies were made up of the same general types of biological building blocks seen in all animals, such as tissues, cells, and proteins. -
PISA Style Scientific Literacy Question on the Origin of Species
PISA Style Scientific Literacy Question On the Origin of Species – Text 1 Read the following extract from Charles Darwin’s book ‘On the Origin of Species’ ‘Can it then be thought improbable, seeing that variations useful to man have undoubtedly occurred, that other variations useful in some way to each being in the great and complex battle of life, should sometimes occur in the course of thousands of generations? If such do occur, can we doubt (remembering that many more individuals are born than can possibly survive) that individuals having an advantage, however slight, over others, would have the best chance of surviving and procreating their kind? On the other hand, we may feel that any variation in the least degree injurious would be rigidly destroyed’. Question 1 : ON THE ORIGIN OF SPECIES In this piece of text, Darwin is explaining his theory of evolution. He called this A Natural Selection B Adaptation C Inheritance D Variation Question 2 : ON THE ORIGIN OF SPECIES At the time, Darwin’s theory was not widely accepted. Which of the reasons below would explain why people did not support his idea? Reason why people did not support Darwin’s theory Yes or No ? There was little scientific evidence to support his theory Yes / No The theory of creationism as taught by the church was widely Yes / No believed and accepted People did not know about Darwin’s theory because there was no Yes / No radio or television Other scientists had come up with similar theories to Darwin Yes / No Question 3 : ON THE ORIGIN OF SPECIES Mali says that the theory of natural selection as described by Darwin in the text does not apply so well for humans. -
SUPPLEMENTARY INFORMATION: Tables, Figures and References
Samuels et al. Evolution of the patellar sesamoid bone in mammals SUPPLEMENTARY INFORMATION: Tables, Figures and References Supplementary Table S1: Mammals$ Higher taxa Genus sp. Estimated. age of Patellar Comments# (partial) specimen, location state 0/1/2 (absent/ ‘patelloid’/ present) Sinoconodonta Sinoconodon Jurassic 0 Patellar groove absent, suggests no rigneyi (Kielan- patella Jaworowska, Cifelli & Luo, Sinoconodon is included on our 2004) phylogeny within tritylodontids. Morganucodonta Megazostrodon Late Triassic, southern 0 rudnerae (Jenkins Africa & Parrington, 1976) Morganucodonta Eozostrodon sp. Late Triassic, Wales 0 Asymmetric patellar groove, (Jenkins et al., specimens disarticulated so it is hard 1976) to assess the patella but appears absent Docodonta Castorocauda 164 Mya, mid-Jurassic, 0 Semi-aquatic adaptations lutrasimilis (Ji, China Luo, Yuan et al., 2006) Docodonta Agilodocodon 164 Mya, mid-Jurassic, 0 scansorius China (Meng, Ji, Zhang et al., 2015) Docodonta Docofossor 160 Mya 0 brachydactylus (Luo, Meng, Ji et al., 2015) Docodonta Haldanodon 150-155 Mya, Late 0 Shallow patellar groove exspectatus Jurassic, Portugal (Martin, 2005b) Australosphenida Asfaltomylos Mid-Jurassic, South ? Postcranial material absent patagonicus America (Martin, 2005a) Australosphenida Ornithorhynchus Extant 2 Platypus, genome sequenced Monotremata anatinus (Warren, Hillier, Marshall Graves et (Herzmark, 1938; al., 2008) Rowe, 1988) Samuels et al. Australosphenida Tachyglossus + Extant 2 Echidnas Monotremata Zaglossus spp. (Herzmark, 1938; Rowe, 1988) Mammaliaformes Fruitafossor 150 Mya, Late Jurassic, 0 Phylogenetic status uncertain indet. windscheffeli (Luo Colorado & Wible, 2005) Mammaliaformes Volaticotherium Late Jurassic/Early ? Hindlimb material incomplete indet. antiquus (Meng, Cretaceous Hu, Wang et al., 2006) Eutriconodonta Jeholodens 120-125 Mya, Early 0 Poorly developed patellar groove jenkinsi (Ji, Luo Cretaceous, China & Ji, 1999) Eutriconodonta Gobiconodon spp. -
The Neogene Record of Northern South American Native Ungulates
Smithsonian Institution Scholarly Press smithsonian contributions to paleobiology • number 101 Smithsonian Institution Scholarly Press The Neogene Record of Northern South American Native Ungulates Juan D. Carrillo, Eli Amson, Carlos Jaramillo, Rodolfo Sánchez, Luis Quiroz, Carlos Cuartas, Aldo F. Rincón, and Marcelo R. Sánchez-Villagra SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of “diffusing knowledge” was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: “It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge.” This theme of basic research has been adhered to through the years in thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Botany Smithsonian Contributions to History and Technology Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Museum Conservation Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology In these series, the Smithsonian Institution Scholarly Press (SISP) publishes small papers and full-scale monographs that report on research and collections of the Institution’s museums and research centers. The Smithsonian Contributions Series are distributed via exchange mailing lists to libraries, universities, and similar institutions throughout the world. Manuscripts intended for publication in the Contributions Series undergo substantive peer review and evaluation by SISP’s Editorial Board, as well as evaluation by SISP for compliance with manuscript preparation guidelines (available at https://scholarlypress.si.edu). -
Father of Modern Taxonomy Carl Linnaeus
The roots of evolutionary History of Evolutionary Thought thinking Learning objectives: 2008 will mark the 150th anniversary 1. To describe major historical events and of the reading of addresses on the theory of key contributors to the development of Aristotle the theory of evolution. evolution by natural selection by Wallace and Darwin, but the roots of evolutionary thinking 384-322 BC 2. To outline the key components of Darwin’s are usually traced back to the Greek philosopher theory of evolution by natural selection. Aristotle. Aristotle developed the idea of a natural order “Scala Readings: Your text does not cover this topic (except naturae”, in which all forms of life were linked in a for box 2.1 and scattered parts of Ch. 2). “chain of being”. However, the people and events mentioned have Aristotle thought of species as unchanging and Wikipedia entries. reflecting a divine order. 336-2 1 336-2 2 Carl Linnaeus: father of Carl Linnaeus: father of modern taxonomy modern taxonomy Linnaeus is credited with developing the binomial Linnaeus recognized that individuals within a nomenclature system, in which each species name Linnaeus Linnaeus 1707-1778 species are capable of interbreeding, while 1707-1778 has two parts individuals in different species could not interbreed. Genus name + specific epithet = species name Linnaeus believed in the ‘balance of nature’, with each Cucurbita pepo = cultivated pumpkin species having a place in the divine plan. Species do Homo sapiens = modern human not change or go extinct. Later in life, Linnaeus acknowledged that new species Linnaeus also saw species as nested within broader could be formed by hybridization (by crossing groups, e.g. -
The Brazilian Megamastofauna of the Pleistocene/Holocene Transition and Its Relationship with the Early Human Settlement of the Continent
Earth-Science Reviews 118 (2013) 1–10 Contents lists available at SciVerse ScienceDirect Earth-Science Reviews journal homepage: www.elsevier.com/locate/earscirev The Brazilian megamastofauna of the Pleistocene/Holocene transition and its relationship with the early human settlement of the continent Alex Hubbe a,b,⁎, Mark Hubbe c,d, Walter A. Neves a a Laboratório de Estudos Evolutivos Humanos, Departamento de Genética e Biologia Evolutiva, Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, São Paulo, SP. 05508-090, Brazil b Instituto do Carste, Rua Barcelona 240/302, Belo Horizonte, MG. 30360-260, Brazil c Department of Anthropology, The Ohio State University, 174W 18th Avenue, Columbus, OH. 43210, United States d Instituto de Investigaciones Arqueológicas y Museo, Universidad Católica del Norte, Calle Gustavo LePaige 380, San Pedro de Atacama, 141-0000, Chile article info abstract Article history: One of the most intriguing questions regarding the Brazilian Late Quaternary extinct megafauna and Homo Received 4 October 2012 sapiens is to what extent they coexisted and how humans could have contributed to the former's extinction. Accepted 18 January 2013 The aim of this article is to review the chronological and archaeological evidences of their coexistence in Available online 25 January 2013 Brazil and to evaluate the degree of direct interaction between them. Critical assessment of the Brazilian megafauna chronological data shows that several of the late Pleistoscene/early Holocene dates available so Keywords: far cannot be considered reliable, but the few that do suggest that at least two species (Catonyx cuvieri, Quaternary Mammals ground sloth; Smilodon populator, saber-toothed cat) survived until the beginning of the Holocene in Southeast Extinction Brazil. -
Paleoecology and Radiocarbon Dating of the Pleistocene Megafauna of the Brazilian Intertropical Region
Quaternary Research 79 (2013) 61–65 Contents lists available at SciVerse ScienceDirect Quaternary Research journal homepage: www.elsevier.com/locate/yqres Paleoecology and radiocarbon dating of the Pleistocene megafauna of the Brazilian Intertropical Region Mário André Trindade Dantas a,b,⁎, Rodrigo Parisi Dutra a,b, Alexander Cherkinsky c, Daniel Costa Fortier b, Luciana Hiromi Yoshino Kamino d, Mario Alberto Cozzuol b, Adauto de Souza Ribeiro e, Fabiana Silva Vieira e a Programa de Pós-graduação em Ecologia, Conservação e Manejo da Vida Silvestre, Av. Antônio Carlos, 6627, CEP 31270-010, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil b Laboratório de Paleozoologia, Departamento de Biologia Geral, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, CEP 31270-010, Belo Horizonte, MG, Brazil c Center for Applied Isotope Studies, University of Georgia, Athens, GA 30602, USA d Programa de Pós-Graduação em Biologia Vegetal, Departamento de Botânica, Universidade Federal de Minas Gerais, Av. Antônio Carlos, 6627, CEP 31270-010, Belo Horizonte, MG, Brazil e Departamento de Biologia, Centro de Ciências Biológicas e da Saúde, Universidade Federal de Sergipe, Av Marechal Rondon s/n, Bairro Rosa Elze, CEP 49100-000, São Cristovão, SE, Brazil article info abstract Article history: During the Pleistocene a fauna composed of large (biomass>44 kg) and giant mammals (biomass>1000 kg) Received 8 April 2012 that are usually associated with open environments lived in the Brazilian Intertropical Region. We present Available online 23 October 2012 here new information concerning the paleoecology and chronology of some species of this megafauna. Carbon isotope analyses were performed for a better understanding of the paleoecology of the species Eremotherium Keywords: laurillardi (Lund, 1842), Notiomastodon platensis (Ameghino, 1888) and Toxodon platensis (Owen, 1849). -
The Role of Ecological Theory in Microbial Ecology
PERSPECTIVES many areas in which microorganisms are of ESSAY environmental and economic importance. For example, improved quantitative theory The role of ecological theory could increase the efficiency of wastewater treatment processes, through the predic- tion of optimal operating conditions and in microbial ecology conditions that are likely to result in system failure. Quantitative information on the James I. Prosser, Brendan J. M. Bohannan, Tom P. Curtis, Richard J. Ellis, links between microbial community structure, Mary K. Firestone, Rob P. Freckleton, Jessica L. Green, Laura E. Green, population dynamics and activities will also Ken Killham, Jack J. Lennon, A. Mark Osborn, Martin Solan, facilitate assessment and, potentially, mitiga- Christopher J. van der Gast and J. Peter W. Young tion of microbial contributions to climate change, and should lead to quantitative Abstract | Microbial ecology is currently undergoing a revolution, with predictions of the impact of climate change repercussions spreading throughout microbiology, ecology and ecosystem science. on microbial contributions to specific eco- The rapid accumulation of molecular data is uncovering vast diversity, abundant system processes. Given the high abundance, biomass, diversity and global activities of uncultivated microbial groups and novel microbial functions. This accumulation of microorganisms, the ecological theory that data requires the application of theory to provide organization, structure, has been developed for plants and animals mechanistic insight and,