Oxalate Formation Under the Hyperarid Conditions of the Atacama Desert As a Mineral Marker to Provide Clues to the Source Of
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DESCRIPTIVE HUMAN PATHOLOGICAL MINERALOGY 1179 but Still Occursregularly
Amerkan Mincraloght, Volume 59, pages I177-1182, 1974 DescriptiveHuman Pathological Mineralogy Rrcneno I. Gmsox P.O. Box I O79, Dauis,C alilornia 95 6 I 6 Absfract Crystallographic, petrographic, and X-ray powder difiraction analysis of approximately 15,000 samples showed that the most common mineral constituents of human pathological concretions are calcium oxalates (whewellite and weddellite), calcium phosphates (apatite, brushite, and whitlockite), and magnesium phosphates (struvite and newberyite). Less are monetite, hannayite, calcite, aragonite, vaterite, halite, gypsum, and hexahydrite."o-rnon of the variables determining which minerals precipitate, the effects of different pH values on deposi- tional conditions are most apparent, and are shown by occurrences and relationships among many of the minerals studied. A pH-sensitive series has been identified among magnesium phosphatesin concretions. Introduction The study was carried out over a period of three The importanceof mineralogyin the field of medi- years.Composition was confirmedby X-ray powder cine lies in the applicationof mineralogicalmethods diffraction and polarizing microscopy;sequence was to study pathologicalmineral depositsin the human arrived at from considerationsof microscopic tex- body. Urology benefitsgreatly becauseconcretions tural and crystallographicrelationships. More than of mineral matter (calculi) are common in the 14,500samples were derivedfrom the urinary sys- urinary system.The value of mineralogicalanalysis tem of kidneys,ureters, bladder, and urethra; the of urinary material was first describedby prien and remaining samples are not statistically significant Frondel (1947). Mineralogistsmay be unawareof and arediscussed only briefly. the variability and nature of such compounds be- Calcium cause reports are usually published in medical Oxalates journals. This investigationreports the mineralogy Whewellite, CaCzOE.H2O,and weddellite, CaCz- and possiblepathological significanceof these min- O4'2H2O,are very uncommonin the mineralworld. -
503.Pdf by Guest on 30 September 2021 504 the CANADIAN MINERALOGIST
Canadian Mineralogist Vol. 2l; pp. 503-508(1983) WEDDELLITE FROM BIGGS, OREGON, U.S.A. J. A. MANDARINO Depdrtmentof Mineralogltand Geology,Royal Ontario Museum,100 Queen's Park, Toronto, Anturio M5S 2C6 and Department of Geologl, University of Toronto, Toronto, Ontario MSS lAl NOBLE V. WITT I319 N.E. IITth Street, Vancouver,Washington 98665, U.S.A. ABSTRACT coeur r6sineux brun fonc€ renfermant un matdriau organique ind€termin6. Le matdriau brun pdle possddeune The rare mineral weddellite, CaCrOo.(2+x)H2O, has duretdd'environ 4 et une densit€de2.02Q), La weddellite beenidentified from an occurrencenear Biggs, Oregon, est tetra&onale,de grpupe spatial I4/m, o 12,33(2),c U.S.A. Crystal$up to 5 x 5 x 40 mm occur in cavities 7.353(3)A, V 1117.9et, z = 8. L'analysechimique du in nodulesof the so-called"Biggs jasper". The nodules materiau blanc donne CaO 35.4, CzO343,2, }J2O 24.7, are in lake-bottom sedimentssandwiched between basalt somme 103.3%oen poids. La formule empiriqueobtenue flows of Mioceneage. Associated minerals are quartz and d partir de cesdonn€es est Ca1.04C1.97O0.6,2.26H2Oott, whewellite (CaC2O4.H2O).The whewellite appears to id6alement, CaC2Oa.2.26HtO;la densite calcul€e est replacesome of the weddellite.The weddelliteoccurs as 2.020(4).Le mat6riaublanc est optiquementuniaxe ( + ), tan, euhedral crystals and as white, fibrous aggregates d'indices principaux ot 1,524 et e 1.5U. L'indice de surroundingsome of the euhedralcrystals. The euhedral compatibilit6,0.008, indique une compatibilitt supdieure crystalsAre dull to vitreousin lustre and often havea dark de la ddnsitdavec donn6esoptiques et chimiques. -
New Mineral Names*
American Mineralogist, Volume 59, pages 873-475, 1974 NEWMINERAL NAMES* Mrcnapl Frprscnpn Bjarebyite* Borovskite* P. B. MooRE, D. H. LuNo, eNo K, L. KBrsrBn (1923) A. A. Yerovor, A. F. Sroonov, N. S. RuomnEvsKrr AND Bjarebyite, (Ba,Sr)(Mn,Fe,Mg),AL(Olt)s(por)a a new I. A. Buo'ro (1973) Borovskite, PdSbTer, ? n€w mineral. species. Mineral. Rec. 4, 282-285, Zapiski Vses.Mineral. Obshch. 102, 427431 (in Russian). Microprobe pure Microprobe analysis by G. Z. Zecttnan gave (av. 60 area analyses, using metals and BirTer as standards, on 4 grains gave scan) Ba 21.81, Sr O.79, Ca 0.06, Mn 7.15, Fe 6.95, Pd 32.94, 31.90, 32.37, 32.37, av. 32.39; Pt. 1.21, 1.25, 1.23, Mg 0.84, Al 7.01, giving the formula above with pOr and 1.20, av. 1.23; Ni 0.26, O.24,0.26, O.25,av.0.25; Fe OH on the basis of the structure. The ratio Mn/Fe is 0.04, 0.04, 0.06, 0.02, av. 0.04; Sb 1,0.92,10.97, 11.01, 11.00, av. 10.98; variable, indicating the likelihood of the occurrence of an Bi 3.35,3.34,3.34, Fe'g*analogue. av. 3.34; Te 51.86, 52.39, 51.70, 51.93, av. 51.97; sum 100.58, 99.98, percent, Weissenberg and rotation photographs show the mineral 10O.14, 100.11, av. 10O.21 corre- sponding to (Pd" (Sbo to be monoclinic, space grotp P2r/m, a 8.930, b lZ.O73, 6PtowNio orFeo o.) *Bio ru)Te" or, or PdaSbTe+. -
Calcium Oxalate Crystal Types in Three Oak Species (Quercus L.) in Turkey
Turk J Biol 36 (2012) 386-393 © TÜBİTAK doi:10.3906/biy-1109-35 Calcium oxalate crystal types in three oak species (Quercus L.) in Turkey Bedri SERDAR1, Hatice DEMİRAY2 1Karadeniz Technical University, Faculty of Forestry, Department of Forest Botany, Trabzon - TURKEY 2Ege University, Faculty of Science, Department of Botany, İzmir - TURKEY Received: 30.09.2011 ● Accepted: 17.02.2012 Abstract: Crystal types from 3 oak species representing 3 diff erent sections of the genus Quercus were identifi ed. Crystals were studied with scanning electron microscopy aft er localisation by light microscopy. Th e crystals were composed of calcium oxalate silicates as whewellite (calcium oxalate monohydrate) composites. In Quercus macranthera Fisch. et Mey. subsp. syspirensis (C.Koch) Menitsky (İspir oak) from the white oaks (section Quercus: Leucobalanus), whewellite and trihydrated weddellites coexisted. Axial parenchyma cells included 30 crystal chains with walls as chambers in uniseriate ray cells; some cells had many crystals without any chambers and were small. Long thin crystals were found adherent to the membrane in the tracheary cell lumens of latewood. Quercus cerris L. var. cerris (hairy oak/Turkey oak) from the red oak group (section Cerris Loudon) is extremely rich in rhomboidal crystals. In species Quercus aucheri Jaub. et Spach (grey pırnal) from the evergreen oak group (section Ilex Loudon) rhomboidal crystals were found in axial parenchyma and multiseriate ray cells. Lignifi ed wall layers were not observed around the crystals with chambers. Key words: Calcium oxalate silicate, crystals, crystal morphology, Quercus, Turkey Introduction some Araceae (e.g., Xanthosoma sagittifolium) (2). Most plants invest considerable resources in In monocotyledons 3 main types of calcium oxalate cytoplasmic inclusions such as starch, tannins, crystal occur: raphides, styloids, and druses. -
Structural Crystal Chemistry of Organic Minerals: the Synthetic Route
STRUCTURAL CRYSTAL CHEMISTRY OF ORGANIC MINERALS: THE SYNTHETIC ROUTE (1) Oscar E. Piro (1) Departamento de Física, Facultad de Ciencias Exactas, Universidad Nacional de La Plata e Instituto IFLP (CONICET, CCT-La Plata), C. C. 67, 1900 La Plata, Argentina Correo Electrónico: [email protected] ‘Organic minerals’ means naturally occurring crystalline organic compounds including metal salts of formic, acetic, citric, mellitic and oxalic acids. The primary tool to disclose their crystal structure and their mutual relationship with each other and with synthetic analogues and also to understand their physicochemical properties is X-ray diffraction. The structure of several synthetic organic minerals was solved well before the discovery of their natural counterpart. On the other hand, complete crystal structure determination of early discovered organic minerals had to await the advent of combined synthetic and advanced X-ray diffraction methods. We review here the crystallography of organic minerals showing the importance of structural studies on their synthetic analogues. This will be highlighted by the cases of synthetic novgorodovaite, Ca 2(C 2O4)Cl 2·2H 2O, and its heptahydrate analogue, Ca 2(C 2O4)Cl 2·7H 2O, and the isotypic to each other stepanovite, NaMg[Fe(C 2O4)3]·9H 2O, and zhemchuzhnikovite, NaMg[Al xFe 1-x(C 2O4)3]·9H 2O. 1. Introduction Full crystallographic characterization of minerals by structural X-ray diffraction methods is frequently hampered by several drawbacks, including unavailability of natural samples, lack of purity and other disorders of these materials, and the difficulty in finding natural single crystals suitable for detailed structural work. -
Phase Transitions of Calcium Oxalate Trihydrate and Epitaxy in the Weddellite-Whewellite System
Scanning Electron Microscopy Volume 1986 Number 4 Article 45 8-30-1986 Phase Transitions of Calcium Oxalate Trihydrate and Epitaxy in the Weddellite-Whewellite System Sergio Deganello University of Chicago Follow this and additional works at: https://digitalcommons.usu.edu/electron Part of the Life Sciences Commons Recommended Citation Deganello, Sergio (1986) "Phase Transitions of Calcium Oxalate Trihydrate and Epitaxy in the Weddellite- Whewellite System," Scanning Electron Microscopy: Vol. 1986 : No. 4 , Article 45. Available at: https://digitalcommons.usu.edu/electron/vol1986/iss4/45 This Article is brought to you for free and open access by the Western Dairy Center at DigitalCommons@USU. It has been accepted for inclusion in Scanning Electron Microscopy by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. SCANNING ELECTRON MICROSCOPY /1986/IV (Pages 1721-1728) 0586-5581/86$1.00+0S SEM Inc., AMF O'Hare (Chicago), IL 60666-0507 USA PHASE TRANSITIONS OF CALCIUM OXALATE TRIHYDRATE AND EPITAXY IN THE WEDDELLITE-WHEWELLITESYSTEM Sergio Deganello * Nephrology Program, University of Chicago, IL and Institute of Mineralogy, University of Palermo, Italy (Received for publication April 07, 1986, and in revised form August 30, 1986) Abstract Introduction The phase changes calcium oxalate Only rarely is calcium oxalate trihydrate-weddellite, weddellite-calcium trihydrate (COT) found in urine or in oxalate monohydrate and calcium oxalate renal calculi. Nevertheless COT has trihydrate-whewellite are individually received much attention (i.e., Gardner, examined at the atomic level from a 1975) due to the possibility that it may theoretical point of view; concomitantly be a precursor to the formation of the topological requirements necessary for whewellite (COM) and weddellite (COD) in phase stability are clarified for each human kidney stones. -
Biofilm Medium Chemistry and Calcium Oxalate Morphogenesis
molecules Article Biofilm Medium Chemistry and Calcium Oxalate Morphogenesis Aleksei Rusakov * , Maria Kuz’mina and Olga Frank-Kamenetskaya * Crystallography Department, Institute of Earth Sciences, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia; [email protected] * Correspondence: [email protected] (A.R.); [email protected] (O.F.-K.) Abstract: The present study is focused on the effect of biofilm medium chemistry on oxalate crys- tallization and contributes to the study of the patterns of microbial biomineralization and the development of nature-like technologies, using the metabolism of microscopic fungi. Calcium ox- alates (weddellite and whewellite in different ratios) were synthesized by chemical precipitation in a weakly acidic environment (pH = 4–6), as is typical for the stationary phase of micromycetes 2+ 2− growth, with a ratio of Ca /C2O4 = 4.0–5.5, at room temperature. Additives, which are common for biofilms on the surface of stone in an urban environment (citric, malic, succinic and fumaric acids; + 2+ 3+ 2+ 2+ 3+ 2+ and K , Mg , Fe , Sr , SO4 , PO4 and CO3 ions), were added to the solutions. The result- ing precipitates were studied via X-ray powder diffraction (XRPD), scanning electron microscopy (SEM) and energy dispersive X-ray spectroscopy (EDXS). It was revealed that organic acids, excreted by micromicetes, and some environmental ions, as well as their combinations, significantly affect the weddellite/whewellite ratio and the morphology of their phases (including the appearance of tetragonal prism faces of weddellite). The strongest unique effect leading to intensive crystalliza- tion of weddellite was only caused by the presence of citric acid additive in the medium. -
Raman Spectroscopy of Natural Oxalates –Implications for the Evidence of Life on Mars
Raman spectroscopy of natural oxalates –implications for the evidence of life on Mars R. L. Frost• , J. Yang, and Z. Ding Inorganic Materials Research Program, Queensland University of Technology, 2 George Street, Brisbane, GPO Box 2434, Queensland 4001, Australia. Published as: R.L.Frost, J. Yang, and Z. Ding. Raman and FTIR spectroscopy of natural oxalates: Implications for the evidence of life on Mars. Chinese Science Bulletin, 2003. 48(17): p. 1844-1852. http://www.scichina.com/contents/2002/ky/ Abstract Evidence for the existence of primitive life forms such as lichens and fungi can be based upon the formation of oxalates. Oxalates are most readily detected using Raman spectroscopy. A comparative study of a suite of natural oxalates including weddellite, whewellite, moolooite, humboldtine, glushinskite, natroxalate and oxammite has been undertaken using Raman spectroscopy. The minerals are characterised by the Raman position of the CO stretching vibration which is cation sensitive. The band is observed at 1468 cm-1 for weddellite, 1489 cm-1 for moolooite, 1471 cm-1 for glushinskite and 1456 cm-1 for natroxalate. Except for oxammite, the infrared and Raman spectra are mutually exclusive indicating the minerals are bidentate. Differences are also observed in the water OH stretching bands of the minerals. The significance of this work rests with the ability of Raman spectroscopy to identify oxalates which often occur as a film on a host rock. As such Raman spectroscopy has the potential to identify the existence or pre-existence of life forms on planets such as Mars. Keywords: oxalate, weddellite, moolooite, humboldtine, natroxalate, oxammite, glushinskite Introduction The presence of oxalates is widespread in nature. -
Calcium Oxalates in Lichens on Surface of Apatite-Nepheline Ore (Kola Peninsula, Russia)
minerals Article Calcium Oxalates in Lichens on Surface of Apatite-Nepheline Ore (Kola Peninsula, Russia) Olga V. Frank-Kamenetskaya 1,* , Gregory Yu. Ivanyuk 2 , Marina S. Zelenskaya 3, Alina R. Izatulina 1 , Andrey O. Kalashnikov 2, Dmitry Yu. Vlasov 3 and Evgeniya I. Polyanskaya 1 1 Crystallography Department, Institute of Earth Sciences, St. Petersburg State University, University emb. 7/9, 199034 St. Petersburg, Russia; [email protected] (A.R.I.); [email protected] (E.I.P.) 2 Kola Science Centre, Russian Academy of Sciences, Fersmana Street 14, 184209 Apatity, Russia; [email protected] (G.Y.I.); [email protected] (A.O.K.) 3 Botany Department, St. Petersburg State University, University emb. 7/9, 199034 St. Petersburg, Russia; [email protected] (M.S.Z.); [email protected] (D.Y.V.) * Correspondence: [email protected]; Tel.: +7-921-331-68-02 Received: 13 September 2019; Accepted: 23 October 2019; Published: 25 October 2019 Abstract: The present work contributes to the essential questions on calcium oxalate formation under the influence of lithobiont community organisms. We have discovered calcium oxalates in lichen thalli on surfaces of apatite-nepheline rocks of southeastern and southwestern titanite-apatite ore fields of the Khibiny peralkaline massif (Kola Peninsula, NW Russia) for the first time; investigated biofilm calcium oxalates with different methods (X-ray powder diffraction, scanning electron microscopy, and EDX analysis) and discussed morphogenetic patterns of its formation using results of model experiments. The influence of inorganic and organic components of the crystallization medium on the phase composition and morphology of oxalates has been analyzed. -
Whewellite Cac2o4·H2O
Whewellite CaC2O4∙H2O Crystal Data: Monoclinic. Point Group: 2/m. Equant to short prismatic [001] crystals, typically distorted, with {001}, {011}, {010}, {110}, {120}, {132}, {101}, several others, to 23 cm; massive cleavable. Twinning: Common, {101} as twin and contact plane, with or without re-entrants. Physical Properties: Cleavage: Good on {101}, imperfect on {010}, indistinct on {001}, {110}. Fracture: Conchoidal. Tenacity: Brittle. Hardness = 2.5-3 D(meas.) = 2.21-2.23 D(calc.) = 2.258 Optical Properties: Transparent. Color: Colorless, white, may be pale yellow or pale brown; colorless in transmitted light. Luster: Vitreous, pearly on {010} and some cleavages. Optical Class: Biaxial (+). Orientation: X = b; Z ∧ c = 30°. Dispersion: r < v. α = 1.489-1.491 β = 1.553-1.554 γ = 1.649-1.650 2V(meas.) = 80°-84° Cell Data: Space Group: P21/c. a = 6.250(1) b = 14.471(2) c = 10.114(2) β = 109.978(5)° Z = 8 X-ray Powder Pattern: Near Havre, Montana, USA. 5.95 (100), 3.652 (90), 2.357 (80), 2.971 (50), 2.497 (20), 2.262 (20), 2.906 (10) Chemistry: (1) (2) (1) (2) + P2O5 0.01 H2O 13.01 - C2O3 48.68 49.29 H2O 0.13 CaO 38.27 38.38 H2O 12.33 Total 100.10 100.00 (1) Huron River, Erie Co., Ohio; here converted to oxides. (2) CaC2O4∙H2O. Occurrence: Of uncommon occurrence as a low-temperature primary hydrothermal mineral in carbonate-sulfide veins, geodes, or septarian nodules; may be associated with coal measures or formed by oxidation of organic material in surrounding rocks; in some uranium deposits. -
Mechanisms of Calcite Replacement by Whewellite: Implications for The
macla nº 15 . septiembre 2011 revista de la sociedad española de mineralogía 187 Mechanisms of Calcite Replacement by Whewellite: Implications for the Conservation of Building Stone / ENCARNACIÓN RUIZ-AGUDO (1,*), PEDRO ÁLVAREZ-LLORET (1), CHRISTINE V. PUTNIS (2), ALEJANDRO RODRÍGUEZ-NAVARRO (1), ANDREW PUTNIS (2) (1) Departamento de Mineralogía y Petrología. Universidad de Granada. Fuentenueva s/n. 18071, Granada (Spain) (2) Institut für Mineralogie. Universität Münster. Corrensstrasse 24. 48149, Münster (Germany) INTRODUCTION. METHODOLOGY. cross-sections of reacted samples show that calcite is progressively replaced by Calcium oxalates are commonly found Replacement reactions in Teflon® calcium oxalate (whewellite, as in the alteration crusts of stone reactors. confirmed by 2D-XRD analysis). The monuments. From a macroscopic point replacement product is polycrystalline. of view, these layers have a smooth, The replacement experiments were Figure 1 shows the typical morphologies uniform appearance, although a more performed at room temperature (23 ±1 of these newly formed crystals growing detailed observation reveals a porous °C) in sealed Teflon® reactors. Two on the calcite surface during the early and irregular surface. The oxalate types of reactors were used with precipitation stages. patinas cover the original surfaces internal volumes of 50 and 250 mL, reproducing fine details such as the respectively. Fragments of optical signs of the instruments used for their quality Iceland Spar single crystals (ca. carving (Del Monte et al., 1987). 0.020 ± 0.005 mg) were weighed and Observations of natural patinas on placed into the reactors before the calcitic stone surfaces seem to suggest reaction solutions were added. 50 mL that these patinas play a preservative and 250 mL of reaction solutions were role on marbles and limestones; introduced into the Teflon reactors. -
Mineralogy of Kidney Stones
Kidney Stones Page 1 of 4>C59orfJ(, HQJ\1E_1 EQPJ.ditL~_eolQgyI ESJU1.tS_AJ )¥jJIld I ~J]!y-I''l3gJ ImJnJng I Em'_i!:.Q-'H!l~J1J~U~QIJJJ~_ctiQJls.1G~_Q::Lin.ks.IIU MINERALOGY OF KIDNEY STONES Gibson Educational Tourism: Home Mining,BJJtte"_3ndgeology,__sQJlJhwestM_QnJ3n~.and cultural history Consul~ fa Kidney stones are pathological crystalline build-ups in the human body that are usually minerals identical with those found in nature. A few of the crystalline compounds that may form are organic chemicals, like cystine (an amino acid) and uric acid. Most gall stones are also crystallized organic material, usually cholesterol. The exact cause of all kidney stones is not well understood, but factors probably include genetics, diet, and disease. Dick Gibson's first career was as an analyst of kidney stones and other biological mineral concretions. He examined more than 20,000 of them in 4 years. Dick Gibson is available to speak on the topics on this page. Visit our Sp.e.~J~J;~r~B.u..r.eJHJfor details. Stories selected from the K-Files! Herewith is a list of common minerals found in stones. Apatit~ I Whewellite I Wed~ellite I Struvite I Brushite I Whitlockite I Newberyite I Others Disclaimer: Dick Gibson is not a Doctor! Don't use anything here as medical advice. This is intended to provide an introduction to the mineralogy of some pretty obscure minerals, and nothing else! Copyright © 1995 Gibson Consulting. Photos by Dick Gibson, painting of kidney with staghorn by Pat Millegan. Photos may be copied for educational or personal use (not for sale) if credit is given.