I POTENSI Trichoderma Spp. ASAL AKAR KOPI DALAM MENEKAN PERKEMBANGAN Colletotrichum Sp

Total Page:16

File Type:pdf, Size:1020Kb

I POTENSI Trichoderma Spp. ASAL AKAR KOPI DALAM MENEKAN PERKEMBANGAN Colletotrichum Sp POTENSI Trichoderma spp. ASAL AKAR KOPI DALAM MENEKAN PERKEMBANGAN Colletotrichum sp. PENYEBAB PENYAKIT ANTRAKNOSA DIDIANA YANUARITA MOLEBILA P4100215301 PROGRAM MAGISTER ILMU HAMA DAN PENYAKIT TUMBUHAN FAKULTAS PERTANIAN UNIVERSITAS HASANUDDIN MAKASSAR 2017 i POTENSI Trichoderma spp. ASAL AKAR KOPI DALAM MENEKAN PERKEMBANGAN Colletotrichum sp. PENYEBAB PENYAKIT ANTRAKNOSA TESIS Sebagai Salah Satu Syarat Untuk Mencapai Gelar Magister Program Studi Ilmu Hama Dan Penyakit Tumbuhan Disusun dan Diajukan oleh : DIDIANA YANUARITA MOLEBILA Nomor Pokok : P4100215301 PROGRAM MAGISTER ILMU HAMA DAN PENYAKIT TUMBUHAN FAKULTAS PERTANIAN UNIVERSITAS HASANUDDIN MAKASSAR 2017 TESIS POTENSI Trichoderma spp. ASAL AKAR KOPI DALAM MENEKAN PERKEMBANGAN Colletotrichum sp. PENYEBAB PENYAKIT ANTRAKNOSA Disusun dan diajukan oleh : DIDIANA YANUARITA MOLEBILA Nomor Pokok : P4100215301 Telah dipertahankan di depan Panitia Ujian Tesis pada tanggal 28 November 2017 dan dinyatakan telah memenuhi syarat Menyetujui, Komisi Penasehat Prof. Dr. Ir. Ade Rosmana, DEA Dr. Ir. Untung Surapaty T, M.Sc Ketua Anggota Ketua Program Studi Magister Dekan Fakultas Pertanian Ilmu Hama dan Penyakit Tumbuhan, Universitas Hasanuddin, Prof. Dr. Ir. Nur Amin, Dipl. Ing. Agr Prof. Dr. Ir. Sumbangan Baja,M.Phill PERNYATAAN KEASLIAN TESIS Yang bertanda tangan di bawah ini : Nama : Didiana Yanuarita Molebila NIM : P4100215301 Program Studi : Ilmu Hama dan Penyakit Tumbuhan Menyatakan dengan sebenar – benarnya bahwa tesis yang saya tulis ini benar–benar merupakan hasil karya saya sendiri dan bukan merupakan pengambilalihan tulisan atau pemikiran orang lain. Apabila dikemudian hari terbukti atau dapat dibuktikan bahwa sebagian atau keseluruhan tesis ini adalah hasil karya orang lain maka saya bersedia menerima sanksi atas perbuatan tersebut. Makassar, November 2017 Yang menyatakan Didiana Y. Molebila ABSTRAK DIDIANA YANUARITA MOLEBILA. Potensi Trichoderma spp. Asal Akar Kopi Dalam Menekan Perkembangan Colletotrichum sp. Penyebab Penyakit Antraknosa (dibimbing oleh : Ade Rosmana dan Untung Surapaty T.) Penelitian bertujuan untuk mengetahui potensi cendawan Trichoderma spp. asal akar kopi dengan menguji efektifitasnya dalam mengendalikan Colletotrichum sp. secara invitro. Penelitian ini menggunakan metode pengujian antagonis secara invitro, pengujian endofitisme, dan pengujian persentase daun kopi terserang Colletotrichum sp. Rancangan percobaan yang digunakan adalah rancangan acak lengkap (RAL) dengan 6 perlakuan dan 4 ulangan. Data dianalisis menggunakan anova dan uji lanjut Duncan taraf uji 5% dengan bantuan program SPSS 16.0. Hasil penelitian menunjukkan bahwa terdapat empat morfospesies Trichoderma yang diisolasi dari akar kopi dan uji antagonisme menunjukkan bahwa perlakuan Trichoderma morfospesies 3 (C-T3) memiliki rata-rata persentase penghambatan terhadap Colletotrichum sp. pada 5 HSI sebesar 70,17%, diikuti oleh Trichoderma morfospesies 2 (C- T2) dengan nilai 65,83% dan Trichoderma morfospesies 1 (C-T1) dengan nilai 63,31%, dan ini tidak berbeda nyata dengan perlakuan Trichoderma asperellum 9(CTa) dengan nilai 74,50%, sedangkan berbeda nyata dengan perlakuan Trichoderma morfospesies 4 (CT-4) memiliki rata-rata persentase penghambatan terendah dengan nilai 43,35% dan kontrol (0,00%). Sementara itu, pada pengujian persentase daun kopi terserang Colletotrichum sp. menunjukkan bahwa perlakuan CT-1, CT-2 dan CT-3 memiliki rata-rata persentase daun terserang terendah yaitu 36,67%; 40,67% dan 40,83% tidak berbeda nyata dengan CTa dengan nilai 30,42%, dan berbeda nyata dengan perlakuan CT-4 memiliki persentase daun terserang tertinggi dengan nilai 51,25% dan kontrol 55,83%. Trichoderma spp. dalam pengujian dapat direisolasi kembali dari bagian tanaman kopi masing-masing perlakuan. Trichoderma morfospesies 2 (T- 2) asal akar kopi dan T. asperellum berpotensi sebagai agens hayati dalam mengendalikan Colletotrichum sp.. Kata Kunci : Endofit, Akar Kopi, Agens Hayati, Trichoderma spp. i ABSTRACT DIDIANA YANUARITA MOLEBILA. The Potential of Trichoderma spp. the Origin of Coffee Roots in Suppressing the Development of Colletotrichum sp., the Causes of Anthracnose Disease (Guided by Ade Rosmana and Untung Surapaty T.) This study aimed to determine the potential of Trichoderma spp. from coffee roots by testing their effectiveness in controlling Colletotrichum sp. in invitro. The method used in the research was invitro antagonistic test, endofitism testing, and the testing of the percentage of leaves attacked by Colletotrichum sp. The experiment design used was the Completely Randomized Design (CRD) with 6 experimental treatments and 4 replications. The data obtained were analyzed using ANOVA and Duncan Advanced test level of 5% using SPSS 16.0 program. The results of the antagonism test indicated that Trichoderma morphospecies 3 (CT-3) treatment had the mean percentage of inhibition at 5 day after inoculation (DAI) reached 70,17%, followed by Trichoderma morphospecies 2 (CT-2) of 65.83%, and Trichoderma morphospecies 1 (CT-1) with the value of 63.31%, which showed an insignificant difference from the treatment using Trichoderma asperellum (CTa) with the value of 74.50%, but it was significantly different with Trichoderma morphospecies 4 (CT-4) with had the mean percentage of the lowest inhibition with the value of 43.35%, and the treatment without Trichoderma (CT0) showed 0,00%. Meanwhile, the testing of the percentage of the coffee leaves attacked by Colletotrichum sp., the coffee leaves treated with CT-1, CT-2, and CT-3 had the mean percentage of the lowest attacked leaves with the values of 36.67%; 40.67% and 40.83% respectively, which showed an insignificant difference from the treatment with CTa with the value of 30,42%. Trichoderma spp. in testing could be reisolated back from the coffee plants in each treatment, the Trichoderma morphospecies 2 (CT-2) as the origin of the coffee roots and the T. asperellum had the potential to become a biological agent in controlling Colletotrichum sp. Keywords: Endophyte, Coffee roots, Biological Agent, Trichoderma spp. ii KATA PENGANTAR Puji syukur Penulis panjatkaan atas karunia Allah SWT atas rahmat dan hikmat sehingga Penulis dapat menyelesaikan thesis yang berjudul “Potensi Trichoderma spp. Asal Akar Kopi Dalam Menekan Perkembangan Colletotrichum sp. Penyebab Penyakit Antraknosa”. Dalam penyusunan tesis ini, Penulis banyak mendapat saran, arahan, bantuan, perhatian, baik selama menempuh pendidikan, penulisan maupun dalam kelancaran penelitian. Pada kesempatan ini Penulis mengucapkan banyak terima kasih kepada : 1. Bapak Prof. Dr. Ir. Ade Rosmana, DEA selaku Ketua Komisi Penasehat Tesis dan Bapak Dr. Ir. Untung Surapati, T., M.Sc selaku Sekretaris Komisi Penasehat Tesis yang telah banyak meluangkan waktu, pikiran, serta memberikan banyak masukan, arahan, dan bimbingan kepada Penulis. 2. Ibu Prof. Dr. Ir. Silvia Syam, M.S; Bapak Prof. Dr. Ir. La Daha; dan Ibu Prof. Dr. Ir. Nurariaty Agus,MS selaku Tim Penguji yang telah meluangkan waktu, pikiran, serta memberikan banyak masukan dan arahan bagi penulis dalam menyelesaikan tulisan ini. 3. Lembaga Pengelola Dana Pendidikan (LPDP) selaku penyedia dana pendidikan, dan penyedia dana penelitian sehingga Penulis dapat menempuh pendidikan di Program Pascasarjana di Universitas Hasanuddin Makassar. 4. Bapak Permenas Lamma Koly, SE selaku pimpinan Yayasan Tribuana Kalabahi dan Bapak Rektor Universitas Tribuana Kalabahi yang telah memberi surat rekomendasi dan ijin kepada Penulis untuk melanjutkan Pendidikan S2. 5. Bapak dan Ibu Dosen Program Pascasarjana Jurusan Ilmu Hama dan Penyakit Tumbuhan Universitas Hasanuddin yang telah berkenan berbagi ilmu pengetahuan selama Penulis melanjutkan pendidikan di Universitas Hasanuddin. 6. Pemerintah Kabupaten Alor, dalam hal ini Badan Kesbangpol Kab. Alor serta Dinas Pertanian dan Perkebunan Kab. Alor yang telah memberikan ijin pengambilan sampel penelitian pada lahan perkebunan kopi di Alor. 7. Bapak Kammarudin dan Bapak Ardan selaku Laboran, Ibu Rahmatia, Ibu Nirwana dan Ibu Asriyani selaku Staf Administrasi yang selalu membantu penulis selama melanjutkan studi di Universitas Hasanuddin. 8. Orang-orang tercinta : Ayahanda Condrat Y. Molebila (Alm) dan Ibunda Petronela Molebila-Sekoni; suami tersayang Imanuel M. Y. Ouw dan seluruh keluarga yang selalu memberi motivasi dan dukungan bagi penulis baik berupa moril maupun materil. 9. Rekan-rekan seangkatan program magister IHPT yaitu kakak Fatmawati, kakak Rahma, Ramlah, Rianingsih, dan sahabat tersayang iv Lestari Lakalet,SH., Noerfitriyani,M.Si., dan Nur Hardina, M.Si yang selalu berbagi dalam suka dan duka bersama penulis selama melanjutkan studi. Sebagai manusia yang tidak luput dari kekhilafan, Penulis menyadari bahwa tulisan ini masih jauh dari kesempurnaan, oleh karena itu kritik dan saran senantiasa Penulis harapkan demi kesempurnaan tulisan ini. Namun, dengan segala keterbatasan dan kekurangan yang ada, harapan penulis semoga tulisan ini dapat memberikan manfaat bagi pembaca. Makassar, November 2017 Penulis, v DAFTAR ISI Halaman HALAMAN JUDUL LEMBAR PENGESAHAN PERNYATAAN KEASLIAN TESIS ABSTRAK i KATA PENGANTAR iii DAFTAR ISI vi DAFTAR TABEL ix DAFTAR GAMBAR x BAB I. PENDAHULUAN 1.1. Latar Belakang 1 1.2. Tujuan dan Kegunaan 4 1.3. Rumusan Masalah 4 1.4. Hipotesis 4 1.5. Kerangka Pikir 5 BAB II. TINJAUAN PUSTAKA 2.1. Penyakit Antraknosa 6 2.1.1. Deskripsi Penyakit 6 2.1.2. Penyebab Penyakit 9 2.1.3. Pengaruh Lingkungan Terhadap Penyebaran 15 Penyakit 2.1.4. Pengendalian 17 2.2. Cendawan Endofit 20 2.2.1. Deskripsi
Recommended publications
  • Anthracnose and Berry Disease of Coffee in Puerto Rico 1
    Anthracnose and Berry Disease of Coffee in Puerto Rico 1 J.S. Mignucci, P.R. Hepperly, J. Ballester and C. Rodriguez-Santiago2 ABSTRACT A survey revealed that Anthracnosis (Giomerella cingulata asex. Colletotri­ chum gloeosporioides) was the principal aboveground disease of field coffee in Puerto Rico. Isolates of C. gloeosporioides from both diseased soybeans and coffee caused typical branch necrosis in coffee after in vitro inoculation. Noninoculated checks showed no symptoms of branch necrosis or dieback. Necrotic spots on coffee berries collected from the field were associated with the coffee anthracnose fungus (C. gloeosporioides), the eye spot fungus (Cercospora coffeicola) and the scaly bark or collar rot fungus (Fusarium stilboides ). Typical lesions were dark brown, slightly depressed and usually contained all three fungi. Fascicles of C. coffeicola conidiophores formed a ring inside the lesion near its periphery. Acervuli of C. gloeosporioides and the sporodochia of F. stilboides were mixed in the center of the lesions. Monthly fungicide sprays (benomyl plus captafol) and double normal fertilization (454 g 10-5-15 with micronutrientsjtree, every 3 months) partially controlled berry spotting. Double normal fertilizer applications alone appeared to reduce the number of diseased berries by approximately 41%, but fungicide sprays gave 57% control. Combining high rate of fertilization and fungicide applications resulted in a reduction of approximately 85% of diseased berries. INTRODUCTION Coffee ( Coffea arabica) is a major crop in Puerto Rico, particularly on the humid northern slopes of the western central mountains. The 1979- 80 crop was harvested from about 40,000 hectares yielding over 11,350,000 kg with a value of $44 millions.
    [Show full text]
  • Responses of Compact Coffee Clones Against Coffee Berry and Coffee Leaf Rust Diseases in Tanzania
    Journal of Plant Studies; Vol. 2, No. 2; 2013 ISSN 1927-0461 E-ISSN 1927-047X Published by Canadian Center of Science and Education Responses of Compact Coffee Clones Against Coffee Berry and Coffee Leaf Rust Diseases in Tanzania Deusdedit L. Kilambo1, Shazia O. W. M. Reuben2 & Delphina P. Mamiro2 1 Tanzania Coffee Rsearch Institute (TaCRI), Lyamungu, Moshi, Tanzania 2 Department of Crop Science and Production, Sokoine University of Agriculture, Morogoro, Tanzania Correspondence: Deusdedit L. Kilambo, TaCRI, Lyamungu, Moshi, Tanzania. Tel: 254-754-377-181. E-mail: [email protected] Received: January 28, 2013 Accepted: May 17, 2013 Online Published: May 28, 2013 doi:10.5539/jps.v2n2p81 URL: http://dx.doi.org/10.5539/jps.v2n2p81 Abstract The utilization of resistant Arabica coffee (Coffea arabica) varieties is considered as the most economical control for coffee berry disease (CBD) and coffee leaf rust (CLR) in Tanzania. The resistance levels of varieties at field and laboratory conditions were assessed through their phenotypic disease reaction response to CBD and CLR. In this study sixteen (16) compact hybrids of C. arabica plus four (4) standard cultivars were evaluated under a range of environmental conditions in on-station and on-farm trials in Tanzania. Also four (4) Colletotrichum kahawae strains of the pathogen responsible for CBD infection; 2010/1, 2010/2, 2006/7 and 2006/14, and Hemileia vastatrix uredospores were used to test the sixteen (16) hybrids through artificial inoculation under controlled conditions (temperatures between 19 to 22 ºC, R.H 100%). Results showed that a significant level of variability (P < 0.05) occurred between the sixteen (16) compacts, three (3) standard checks and N39 a commercial susceptible variety across trials.
    [Show full text]
  • JAKO201811562301979.Pdf
    MYCOBIOLOGY 2018, VOL. 46, NO. 4, 370–381 https://doi.org/10.1080/12298093.2018.1538068 RESEARCH ARTICLE Diversity and Bioactive Potential of Culturable Fungal Endophytes of Medicinal Shrub Berberis aristata DC.: A First Report Supriya Sharma, Suruchi Gupta, Manoj K. Dhar and Sanjana Kaul School of Biotechnology, University of Jammu, Jammu, J&K, India ABSTRACT ARTICLE HISTORY Bioactive natural compounds, isolated from fungal endophytes, play a promising role in the Received 10 August 2017 search for novel drugs. They are an inspiring source for researchers due to their enormous Revised 26 December 2017 structural diversity and complexity. During the present study fungal endophytes were iso- Accepted 19 February 2018 lated from a well-known medicinal shrub, Berberis aristata DC. and were explored for their KEYWORDS antagonistic and antioxidant potential. B. aristata, an important medicinal shrub with remark- Antagonistic; bioactive; able pharmacological properties, is native to Northern Himalayan region. A total of 131 diversity; novel; endophytic fungal isolates belonging to eighteen species and nine genera were obtained therapeutic agents from three hundred and thirty surface sterilized segments of different tissues of B. aristata. The isolated fungi were classified on the basis of morphological and molecular analysis. Diversity and species richness was found to be higher in leaf tissues as compared to root and stem. Antibacterial activity demonstrated that the crude ethyl acetate extract of 80% isolates exhibited significant results against one or more bacterial pathogens. Ethyl acetate extract of Alternaria macrospora was found to have potential antibacterial activity. Significant antioxidant activity was also found in crude ethyl acetate extracts of Alternaria alternata and Aspergillus flavus.
    [Show full text]
  • A Survey of Endophytic Fungi Associated with High-Risk Plants Imported for Ornamental Purposes
    agriculture Review A Survey of Endophytic Fungi Associated with High-Risk Plants Imported for Ornamental Purposes Laura Gioia 1,*, Giada d’Errico 1,* , Martina Sinno 1 , Marta Ranesi 1, Sheridan Lois Woo 2,3,4 and Francesco Vinale 4,5 1 Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; [email protected] (M.S.); [email protected] (M.R.) 2 Department of Pharmacy, University of Naples Federico II, 80131 Naples, Italy; [email protected] 3 Task Force on Microbiome Studies, University of Naples Federico II, 80128 Naples, Italy 4 National Research Council, Institute for Sustainable Plant Protection, 80055 Portici, Italy; [email protected] 5 Department of Veterinary Medicine and Animal Productions, University of Naples Federico II, 80137 Naples, Italy * Correspondence: [email protected] (L.G.); [email protected] (G.d.); Tel.: +39-2539344 (L.G. & G.d.) Received: 31 October 2020; Accepted: 11 December 2020; Published: 17 December 2020 Abstract: An extensive literature search was performed to review current knowledge about endophytic fungi isolated from plants included in the European Food Safety Authority (EFSA) dossier. The selected genera of plants were Acacia, Albizia, Bauhinia, Berberis, Caesalpinia, Cassia, Cornus, Hamamelis, Jasminus, Ligustrum, Lonicera, Nerium, and Robinia. A total of 120 fungal genera have been found in plant tissues originating from several countries. Bauhinia and Cornus showed the highest diversity of endophytes, whereas Hamamelis, Jasminus, Lonicera, and Robinia exhibited the lowest. The most frequently detected fungi were Aspergillus, Colletotrichum, Fusarium, Penicillium, Phyllosticta, and Alternaria. Plants and plant products represent an inoculum source of several mutualistic or pathogenic fungi, including quarantine pathogens.
    [Show full text]
  • Vega Beauveria Bassiana.Pdf
    mycological research 111 (2007) 748–757 journal homepage: www.elsevier.com/locate/mycres Inoculation of coffee plants with the fungal entomopathogen Beauveria bassiana (Ascomycota: Hypocreales) Francisco POSADAa, M. Catherine AIMEb, Stephen W. PETERSONc, Stephen A. REHNERa, Fernando E. VEGAa,* aInsect Biocontrol Laboratory, US Department of Agriculture, Agricultural Research Service, Building 011A, BARC-W, Beltsville, MD 20705, USA bSystematic Botany and Mycology Laboratory, US Department of Agriculture, Agricultural Research Service, Building 011A, BARC-W, Beltsville, MD 20705, USA cMicrobial Genomics and Bioprocessing Research Unit, National Center for Agricultural Utilization Research, US Department of Agriculture, Agricultural Research Service, 1815 North University Street, Peoria, IL 61604, USA article info abstract Article history: The entomopathogenic fungus Beauveria bassiana was established in coffee seedlings after Received 11 July 2006 fungal spore suspensions were applied as foliar sprays, stem injections, or soil drenches. Received in revised form Direct injection yielded the highest post-inoculation recovery of endophytic B. bassiana. 19 January 2007 Establishment, based on percent recovery of B. bassiana, decreased as time post-inocula- Accepted 8 March 2007 tion increased in all treatments. Several other endophytes were isolated from the seedlings Published online 15 March 2007 and could have negatively influenced establishment of B. bassiana. The recovery of B. bassi- Corresponding Editor: ana from sites distant from the point of inoculation indicates that the fungus has the Richard A. Humber potential to move throughout the plant. Published by Elsevier Ltd on behalf of The British Mycological Society. Keywords: Coffea Coffee berry borer Endophytes Hypothenemus Introduction the application of entomopathogenic fungi (Posada 1998; de la Rosa et al.
    [Show full text]
  • Inoculation of Coffee Plants with the Fungal Entomopathogen Beauveria Bassiana (Ascomycota: Hypocreales)
    University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln U.S. Department of Agriculture: Agricultural Publications from USDA-ARS / UNL Faculty Research Service, Lincoln, Nebraska 2007 Inoculation of coffee plants with the fungal entomopathogen Beauveria bassiana (Ascomycota: Hypocreales) Francisco Posada United States Department of Agriculture M. Catherine Aime United States Department of Agriculture Stephen W. Peterson United States Department of Agriculture Stephen A. Rehner United States Department of Agriculture, [email protected] Fernando E. Vega United States Department of Agriculture Follow this and additional works at: https://digitalcommons.unl.edu/usdaarsfacpub Part of the Agricultural Science Commons Posada, Francisco; Aime, M. Catherine; Peterson, Stephen W.; Rehner, Stephen A.; and Vega, Fernando E., "Inoculation of coffee plants with the fungal entomopathogen Beauveria bassiana (Ascomycota: Hypocreales)" (2007). Publications from USDA-ARS / UNL Faculty. 372. https://digitalcommons.unl.edu/usdaarsfacpub/372 This Article is brought to you for free and open access by the U.S. Department of Agriculture: Agricultural Research Service, Lincoln, Nebraska at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications from USDA-ARS / UNL Faculty by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. mycological research 111 (2007) 748–757 journal homepage: www.elsevier.com/locate/mycres Inoculation of coffee plants with the fungal
    [Show full text]
  • Ficha Técnica No. 42
    Ficha Técnica No. 42 Antracnosis del cafeto Colletotrichum kahawae J. M. Waller & Bridge Fotografías: CENICAFÉ. Elaborada por: SENASICA Laboratorio Nacional de Referencia Epidemiológica Fitosanitaria LANREF-CP Fichatécnicano.42 Antracnosis de cafeto 2014 1 Antracnosis del cafeto Colletotrichum kahawae J. M. Waller & Bridge Servicio Nacional de Sanidad, Inocuidad y Calidad Agroalimentaria (SENASICA) Calle Guillermo Pérez Valenzuela No. 127, Col. Del Carmen C.P. 04100, Coyoacán, México, D.F. Primera edición: Noviembre 2014 ISBN: 978-607-715-253-8 Versión 1 Fichatécnicano.42 Antracnosis de cafeto 2014 2 Contenido 1. IDENTIDAD ............................................................................................................................................................... 5 1.1. Nombre ................................................................................................................................................................ 5 1.2. Sinonimia ............................................................................................................................................................ 5 1.3. Clasificación taxonómica .................................................................................................................................. 5 1.4. Nombre común ................................................................................................................................................... 5 1.5. Código EPPO .....................................................................................................................................................
    [Show full text]
  • Abundance of Pests and Diseases in Arabica Coffee Production
    Abundance of pests and diseases in Arabica coffee production systems in Uganda - ecological mechanisms and spatial analysis in the face of climate change Von der Naturwissenschaftlichen Fakult¨atder Gottfried Wilhelm Leibniz Universit¨atHannover zur Erlangung des Grades Doktorin der Gartenbauwissenschaften (Dr. rer. hort.) genehmigte Dissertation von Theresa Ines Liebig, Dipl.-Agr.Biol. 2017 Referent: Prof. Dr. rer. nat. Hans-Michael Poehling Korreferent: Prof. Dr. rer. hort. Christian Borgemeister Korreferent: Prof. Dr. rer. hort. Edgar Maiss Tag der Promotion: 17.07.2017 External supervisors / advisers Dr. Jacques Avelino Dr. Peter L¨aderach Dr. Piet van Asten Dr. Laurence Jassogne Funding Claussen Simon Stiftung Federal Ministry for Economic Cooperation and Development Abstract Coffee production worldwide is threatened by a range of coffee pests and diseases (CPaD). Integrated management options require an understanding of the bioecology of CPaD and the prevalent interdependencies within the agroecological context. The comparison of different shading systems (e.g. shade-grown vs. sun-grown coffee) and the identification of trade- offs for ecosystem services is still a matter of ongoing debates. There is little quantitative knowledge of field-level investigation on shade effects and its ecological mechanisms across environmental and shading system gradients. Considering the increasingly evident effects of progressive climate change on CPaD, the need to examine the balance of shade effects under different environmental conditions becomes apparent. With the example of the coffee grow- ing region of Mt Elgon, Uganda, this project aimed at addressing the complexity of shading effects on economically relevant CPaD using environmental and production system gradients. The approach was designed in an interdisciplinary manner, to involve the broader context of coffee agroforestry systems.
    [Show full text]
  • (Colletotrichum Kahawae) in Ethiopia
    Journal of Biology, Agriculture and Healthcare www.iiste.org ISSN 2224-3208 (Paper) ISSN 2225-093X (Online) Vol.6, No.19, 2016 A Review on the Status of Coffee Berry Disease (Colletotrichum kahawae ) in Ethiopia Gabisa Giddisa Summary Ethiopia has served in the past and continues to serve as the source of germplasm for several economically important cultivated crops around the world. Coffee is a non-alcoholic and stimulant beverage crop, and belongs to the family Rubiaceae and the genus Coffea. This commercially as well as genetically valuable crop is attacked by a number of pre- and post-harvest diseases, and of these diseases, coffee berry disease (CBD), coffee wilt disease (CWD) and coffee leaf rust (CLR) are the most important in Ethiopia. CBD is by far the most economically important disease causing up to 100% losses in some places.CBD is a major cause of crop loss of arabica coffee in Africa and a dangerous threat to production elsewhere. Prevalence of CBD was conducted in Oromiya Region and Southern Nations Nationalities and Peoples Region (SNNPR) and the result indicated 38.8 and 17.2% of mean percent prevalence of the disease, respectively (IAR, 1997). According to the result CBD pressure was very high at higher altitudes in the southwest region, while severe disease was recorded in valleys of Sidamo zone. In Amhara region where CBD occurs, survey result showed that an average CBD severity for the 1996/97-crop season was 38%.The occurrence and intensity of CBD varies from place to place and from one season to the other, depending largely on host susceptibility, pathogen aggressiveness and favorable weather conditions.
    [Show full text]
  • Characterization of Colletotrichum Species Associated with Coffee Berries in Northern Thailand
    Online advanced Fungal Diversity Characterization of Colletotrichum species associated with coffee berries in northern Thailand Prihastuti, H.1,2,3, Cai, L.4*, Chen, H.1, McKenzie, E.H.C.5 and Hyde, K.D.1,2* 1International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Bailongsi, Kunming 650224, PR China 2School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand 3Department of Biotechnology, Faculty of Agriculture, Brawijaya University, Malang 65145, Indonesia 4Novozymes China, No. 14, Xinxi Road, Shangdi, HaiDian, Beijing, 100085, PR China 5Landcare Research, Private Bag 92170, Auckland 1142, New Zealand Prihastuti, H., Cai, L., Chen, H., McKenzie, E.H.C. and Hyde, K.D. (2009). Characterization of Colletotrichum species associated with coffee berries in northern Thailand. Fungal Diversity 39: 89-109. The identity of Colletotrichum species on Coffea (coffee) is not clearly understood. We report on Colletotrichum species associated with coffee berries in northern Thailand and compare them to species reported to cause coffee berry disease elsewhere. Morphological, cultural, biochemical and pathogenic characters, together with DNA sequence analyses resulted in the isolates clustering into three species: Colletotrichum asianum sp. nov., C. fructicola sp. nov. and C. siamense sp. nov. Phylogeny inferred from combined datasets of partial actin, β-tubulin (tub2), calmodulin, glutamine synthetase, glyceraldehyde-3-phosphate dehydrogenase genes and the complete rDNA ITS1-5.8S-ITS2 regions revealed groupings that are congruent with morphological characters. Biochemical and DNA sequence data from multi-genes used here provided reliable data to differentiate between C. kahawae, C. gloeosporioides and the new Colletotrichum species.
    [Show full text]
  • 7.5 X 11.5.Doubleline.P65
    Cambridge University Press 978-0-521-80739-5 - Introduction to Fungi, Third Edition John Webster and Roland Weber Index More information Index Page numbers with images are underlined, those with explanations of concepts are printed in bold. ABC transporters 280, 383, 439 Aegeritina tortuosa (teleom. alder, leaf blister 251 Absidia 183 Subulicystidium longisporum) 697 Aleuria 417–419 Absidia corymbifera 184 aequi-hymenial gills 522 Aleuria aurantia 243, 419, Pl. 6; Absidia glauca 172, 176, 185 aero-aquatic fungi 506, 696–701; mycorrhiza 419 Absidia spinosa 173, 176, 184 anamorph-teleomorph connections aleuriaxanthin 419 Acaulospora 221 697; ecophysiology 698–701 algal parasites 127 acervulus 231, 387 aethalium 50, Pl. 1 alkaloids 354, 364, 539, 541; Achlya 86–91; aplanetic forms 93; aflatoxins 304, 305, Pl. 4 biosynthesis 354; commercial asexual reproduction 87, 88; Agaricus 532–536 production 354; see Claviceps hyphae 80; relative sexuality 91; Agaricus arvensis 532 purpurea, Neotyphodium sex hormones 88–89, 90, 91; sexual Agaricus bisporus 15, 533; breeding allergens; see asthma reproduction 88–91 536; cultivation 525, 532–534; allyl amines 279, 280 Achlya ambisexualis 88, 89, 91 life cycle 535; mating system 506, Allomyces 155–160; Brachy-Allomyces 160; Achlya bisexualis 88 535; morphogenesis 534–535; var. Cystogenes 159; Eu-Allomyces 156; life Achlya colorata 69, 87–88 burnettii 536; var. eurotetrasporus 536 cycle 158; polyploidy 159; Achlya heterosexualis 88 Agaricus bitorquis 532 sex hormones (parisin and sirenin) Achlya klebsiana
    [Show full text]
  • Effect of Shade on Arabica Coffee Berry Disease Development Toward an Agroforestry System to Reduce Disease Impact J.A
    Effect of shade on Arabica Coffee Berry Disease development toward an agroforestry system to reduce disease impact J.A. Mouen Bedimo, I. Njiayouom, Daniel Bieysse, M. Ndoumbé Nkeng, C. Cilas, Jean-Loup Notteghem To cite this version: J.A. Mouen Bedimo, I. Njiayouom, Daniel Bieysse, M. Ndoumbé Nkeng, C. Cilas, et al.. Effect of shade on Arabica Coffee Berry Disease development toward an agroforestry system to reduce disease impact. Phytopathology, American Phytopathological Society, 2008, 98 (12), pp.1320-1325. 10.1094/phyto- 98-12-1320. hal-02660860 HAL Id: hal-02660860 https://hal.inrae.fr/hal-02660860 Submitted on 30 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Ecology and Epidemiology Effect of Shade on Arabica Coffee Berry Disease Development: Toward an Agroforestry System to Reduce Disease Impact J. A. Mouen Bedimo, I. Njiayouom, D. Bieysse, M. Ndoumbè Nkeng, C. Cilas, and J. L. Nottéghem First and second authors: IRAD, Station Polyvalente de Foumbot, BP 665 Bafoussam, Cameroun; third author: CIRAD, UMR BGPI, Campus International de Baillarguet, TA41/k, 34398 Montpellier, cedex 5, France; fourth author: IRAD, Centre de Nkolbisson, BP 2123 Yaoundé Cameroun; fifth author: CIRAD, UPR Maîtrise des bioagresseurs des pérennes, Avenue Agropolis TA-A3/02, 34398, Montpellier, France; and sixth author: SupAgro, UMR BGPI, Campus International de Baillarguet, TA41/k, 34398 Montpellier, cedex 5, France.
    [Show full text]