Let's Make a Tubeworm!

Total Page:16

File Type:pdf, Size:1020Kb

Let's Make a Tubeworm! Gulf of Mexico Exploration Let’s Make a Tube Worm! FOCUS Polychaete worm Symbiotic relationships in cold-seep communities Bacteria Symbiotic GRADE LEVEL Trophosome 5-6 Life Science Hemoglobin Organic FOCUS QUESTION How are deep-sea tubeworms adapted for a symbi- The words listed as key words are integral to the otic relationship that allows them to survive? unit. There are no formal signs in American Sign Language for any of these words and many are LEARNING OBJECTIVES difficult to lipread. Having the vocabulary list on Students will be able to describe the process of the board as a reference during the lesson will be chemosynthesis in general terms, and will be able extremely helpful. Also give the list as a handout to contrast chemosynthesis and photosynthesis. to the students to refer to after the lesson. Students will be able to describe major features of Taking some time to introduce some of the cold seep communities, and list at least five organ- Background Information will be of great use later isms typical of these communities. as the students attempt to complete the activity in Part 4. Have the students act as one group for Parts Students will be able to define symbiosis and will 3 and 4. An alternative to the written report, which be able to describe two examples of symbiosis in might be difficult or time consuming, is to have the cold seep communities. students make a video or oral presentation. Students will be able to describe the anatomy of MATERIALS vestimentiferans, and explain how these organisms (If posters are to be made) poster materials (bris- obtain their food. tol board, markers) (If models are to be made) cardboard tubes (mail- ADDITIONAL INFORMATION FOR TEACHERS OF DEAF STUDENTS ing tube or paper towel roll), colored markers, In addition to the words listed as key words, the pipe cleaners (to simulate tentacles), modelling following words should be part of the list. clay, paper and glue (to make a model tropho- Photosynthesis some) Symbiosis Hydrothermal vent AUDIO/VISUAL MATERIALS Hydrocarbon None Sediments 1 Gulf of Mexico Exploration - Grades 5-6 (Life Science) Gulf of Mexico Exploration - Grades 5-6 (Life Science) Focus: Deep-sea hobitats oceanexplorer.noaa.gov oceanexplorer.noaa.gov Focus: Deep-sea habitats TEACHING TIME Other deep-sea chemosynthetic communities are One or two 45-minute class periods found in areas where hydrocarbon gases (often methane and hydrogen sulfide) and oil seep out of SEATING ARRANGEMENT sediments. These areas, known as cold seeps, are Groups of four students commonly found along continental margins, and (like hydrothermal vents) are home to many species of MAXIMUM NUMBER OF STUDENTS organisms that have not been found anywhere else 30 on Earth. Typical features of communities that have been studied so far include mounds of frozen crystals KEY WORDS of methane and water called methane hydrate ice, Cold seeps that are home to polychete worms. Brine pools, con- Methane hydrate ice taining water four times saltier than normal seawater, Chemosynthesis have also been found. Researchers often find dead Brine pool fish floating in the brine pool, apparently killed by Vestimentifera the high salinity. Trophosome Plume As is the case with hydrothermal vents, chemosyn- Vestimentum thetic bacteria are also the base of the food web in Trunk cold seep communities. Bacteria may form thick bac- Tube terial mats, or may live in close association with other Opisthosome organisms. These associations are examples of sym- biotic relationships in which both organisms benefit BACKGROUND INFORMATION from the association (in contrast to parasitic relation- One of the major scientific discoveries of the last 100 ships in which one organism benefits and the other years is the presence of extensive deep-sea com- is harmed). One of the most interesting and unusual munities that do not depend upon sunlight as their symbiotic relationships exists between chemosynthetic primary source of energy. Instead, these communities bacteria and large tubeworms that belong to the derive their energy from chemicals through a process group Vestimentifera (formerly classified within the called chemosynthesis (in contrast to photosynthesis phylum Pogonophora; recently Pogonophora and in which sunlight is the basic energy source). Some Vestimentifera have been included in the phylum chemosynthetic communities have been found near Annelida). Pogonophora means “beard bearing,” underwater volcanic hot springs called hydrothermal and refers to the fact that many species in this phy- vents, which usually occur along ridges separating lum have one or more tentacles at their anterior end. the Earth’s tectonic plates. Hydrogen sulfide is abun- Tubeworms that live in the vicinity of hydrothermal dant in the water erupting from hydrothermal vents, vents and cold seeps are called vestimentiferans, and is used by chemosynthetic bacteria that are the and their tentacles are bright red because they base of the vent community food chain. These bac- contain hemoglobin (like our own red blood cells). teria obtain energy by oxidizing hydrogen sulfide to Vestimentiferans can grow to more than 10 feet sulfur: long, sometimes in clusters of millions of individuals, and are believed to live for more than 100 years. CO2 + 4H2S + O2 > CH2O + 4S +3H2O (carbon dioxide plus sulfur dioxide plus oxygen They do not have a mouth, stomach, or gut. Instead, yields organic matter, sulfur, and water). Visit http: they have a large organ called a trophosome, that //www.pmel.noaa.gov/vents/home.html for more information contains chemosynthetic bacteria. Hemoglobin in the and activities on hydrothermal vent communities. tubeworm’s blood absorbs hydrogen sulfide and oxy- gen from the water around the tentacles, and then 2 3 Gulf of Mexico Exploration - Grades 5-6 (Life Science) Gulf of Mexico Exploration - Grades 5-6 (Life Science) Focus: Deep-sea hobitats oceanexplorer.noaa.gov oceanexplorer.noaa.gov Focus: Deep-sea habitats transports these raw materials to bacteria living in 3. Have each student group create a poster or three- the trophosome. The bacteria produce organic mol- dimensional model of a tubeworm. A portion of ecules that provide nutrition to the tubeworm. the poster or model should be in cut-away form so that internal structures can be seen. The fol- Similar symbiotic relationships are found in clams lowing structures should be included: and mussels that have chemosynthetic bacteria liv- • Plume (including red color to indicate hemo- ing in their gills. A variety of other organisms are globin) also found in cold seep communities, and probably • Vestimentum use tubeworms, clams, mussels, and bacterial mats • Trophosome (including symbiotic bacteria) as sources of food. These organisms include snails, • Trunk eels, sea stars, crabs, lobsters, isopods, sea cucum- • Tube bers, and fishes. Specific relationships between • Opisthosome these organisms have not been well-studied. 4. Have each group prepare a written report that The Gulf of Mexico contains the largest reservoir of includes: fossil fuel in the continental U.S., and the geology • A description of the function of each of the of the area has been intensively studied for more organs or structures listed above; than 50 years. While cold seep communities were • A description of the symbiotic relationship discovered in the Gulf in 1984, the biology of these between the tubeworm and chemosynthetic communities has been studied at only three sites bacteria; less than 20 km apart. Exploring for new cold seep • An explanation of how the tubeworm obtains sites and studying the biology and ecology of the its food organisms that live there is the focus of the Ocean • A discussion of how this symbiotic relationship Exploration 2002 Gulf of Mexico Expedition. supports other organisms in the cold seep food web, and what some of these organisms might This activity focuses on the unusual anatomy and be. ecology of vestimentiferans. THE BRIDGE CONNECTION LEARNING PROCEDURE www.vims.edu/BRIDGE/vents.html 1. Lead a discussion of deep-sea chemosynthetic communities. Contrast chemosynthesis with THE “ME” CONNECTION photosynthesis: In both processes, organisms Have students write a short essay on symbiotic rela- build sugars from carbon dioxide and water. tionships that are important in their own lives. This process requires energy; photosynthesizers obtain this energy from the sun, while chemosyn- CONNECTIONS TO OTHER SUBJECTS thesizers obtain energy from chemical reactions. English/Language Arts, Earth Science Contrast hydrothermal vent communities with cold-seep communities. Visit http://www.bio.psu.edu/ EVALUATION cold_seeps for a virtual tour of a cold seep commu- Models or posters and the accompanying written nity, including several images of tubeworms. reports can be evaluated on the basis of the extent to which the required elements are included and 2. Have students visit http://www.cham.montefiore.org/links/ upon the quality of the written discussions. pbs/wgbh/nova/abyss/life/tubewormsans.html to find an illustration of tubeworm anatomy and explana- EXTENSIONS tions of what each body part does. Have students draw a cold seep food web that 2 3 Gulf of Mexico Exploration - Grades 5-6 (Life Science) Focus: Deep-sea hobitats oceanexplorer.noaa.gov includes at least six organisms representing pri- Content Standard D: Earth and Space Science mary producers and consumers. • Structure of the Earth system RESOURCES FOR MORE INFORMATION http://oceanexplorer.noaa.gov – Follow the Gulf of Mexico Paula
Recommended publications
  • Tube Worm Riftia Pachyptila to Severe Hypoxia
    l MARINE ECOLOGY PROGRESS SERIES Vol. 174: 151-158,1998 Published November 26 Mar Ecol Prog Ser Metabolic responses of the hydrothermal vent tube worm Riftia pachyptila to severe hypoxia Cordelia ~rndt',~.*,Doris Schiedek2,Horst Felbeckl 'University of California San Diego, Scripps Institution of Oceanography. La Jolla. California 92093-0202. USA '~alticSea Research Institute at the University of Rostock, Seestrasse 15. D-181 19 Rostock-Warnemuende. Germany ABSTRACT: The metabolic capabilit~esof the hydrothermal vent tube worm Riftia pachyptila to toler- ate short- and long-term exposure to hypoxia were investigated After incubating specimens under anaerobic conditions the metabolic changes in body fluids and tissues were analyzed over time. The tube worms tolerated anoxic exposure up to 60 h. Prior to hypoxia the dicarboxylic acid, malate, was found in unusually high concentrations in the blood (up to 26 mM) and tissues (up to 5 pm01 g-' fresh wt). During hypoxia, most of the malate was degraded very quickly, while large quantities of succinate accumulated (blood: about 17 mM; tissues: about 13 pm01 g-l fresh wt). Volatile, short-chain fatty acids were apparently not excreted under these conditions. The storage compound, glycogen, was mainly found in the trophosome and appears to be utilized only during extended anaerobiosis. The succinate formed during hypoxia does not account for the use of malate and glycogen, which possibly indicates the presence of yet unidentified metabolic end products. Glutamate concentration in the trophosome decreased markedly durlng hypoxia, presumably due to a reduction in the autotrophic function of the symb~ontsduring hypoxia. In conclusion, R. pachyptila is phys~ologicallywell adapted to the oxygen fluctuations freq.uently occurring In the vent habitat.
    [Show full text]
  • Nanosims and Tissue Autoradiography Reveal Symbiont Carbon fixation and Organic Carbon Transfer to Giant Ciliate Host
    The ISME Journal (2018) 12:714–727 https://doi.org/10.1038/s41396-018-0069-1 ARTICLE NanoSIMS and tissue autoradiography reveal symbiont carbon fixation and organic carbon transfer to giant ciliate host 1 2 1 3 4 Jean-Marie Volland ● Arno Schintlmeister ● Helena Zambalos ● Siegfried Reipert ● Patricija Mozetič ● 1 4 2 1 Salvador Espada-Hinojosa ● Valentina Turk ● Michael Wagner ● Monika Bright Received: 23 February 2017 / Revised: 3 October 2017 / Accepted: 9 October 2017 / Published online: 9 February 2018 © The Author(s) 2018. This article is published with open access Abstract The giant colonial ciliate Zoothamnium niveum harbors a monolayer of the gammaproteobacteria Cand. Thiobios zoothamnicoli on its outer surface. Cultivation experiments revealed maximal growth and survival under steady flow of high oxygen and low sulfide concentrations. We aimed at directly demonstrating the sulfur-oxidizing, chemoautotrophic nature of the symbionts and at investigating putative carbon transfer from the symbiont to the ciliate host. We performed pulse-chase incubations with 14C- and 13C-labeled bicarbonate under varying environmental conditions. A combination of tissue autoradiography and nanoscale secondary ion mass spectrometry coupled with transmission electron microscopy was used to fi 1234567890();,: follow the fate of the radioactive and stable isotopes of carbon, respectively. We show that symbiont cells x substantial amounts of inorganic carbon in the presence of sulfide, but also (to a lesser degree) in the absence of sulfide by utilizing internally stored sulfur. Isotope labeling patterns point to translocation of organic carbon to the host through both release of these compounds and digestion of symbiont cells. The latter mechanism is also supported by ultracytochemical detection of acid phosphatase in lysosomes and in food vacuoles of ciliate cells.
    [Show full text]
  • Genomic Adaptations to Chemosymbiosis in the Deep-Sea Seep-Dwelling Tubeworm Lamellibrachia Luymesi Yuanning Li1,2* , Michael G
    Li et al. BMC Biology (2019) 17:91 https://doi.org/10.1186/s12915-019-0713-x RESEARCH ARTICLE Open Access Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi Yuanning Li1,2* , Michael G. Tassia1, Damien S. Waits1, Viktoria E. Bogantes1, Kyle T. David1 and Kenneth M. Halanych1* Abstract Background: Symbiotic relationships between microbes and their hosts are widespread and diverse, often providing protection or nutrients, and may be either obligate or facultative. However, the genetic mechanisms allowing organisms to maintain host-symbiont associations at the molecular level are still mostly unknown, and in the case of bacterial-animal associations, most genetic studies have focused on adaptations and mechanisms of the bacterial partner. The gutless tubeworms (Siboglinidae, Annelida) are obligate hosts of chemoautotrophic endosymbionts (except for Osedax which houses heterotrophic Oceanospirillales), which rely on the sulfide- oxidizing symbionts for nutrition and growth. Whereas several siboglinid endosymbiont genomes have been characterized, genomes of hosts and their adaptations to this symbiosis remain unexplored. Results: Here, we present and characterize adaptations of the cold seep-dwelling tubeworm Lamellibrachia luymesi, one of the longest-lived solitary invertebrates. We sequenced the worm’s ~ 688-Mb haploid genome with an overall completeness of ~ 95% and discovered that L. luymesi lacks many genes essential in amino acid biosynthesis, obligating them to products provided by symbionts. Interestingly, the host is known to carry hydrogen sulfide to thiotrophic endosymbionts using hemoglobin. We also found an expansion of hemoglobin B1 genes, many of which possess a free cysteine residue which is hypothesized to function in sulfide binding.
    [Show full text]
  • Chemosynthetic Symbiont with a Drastically Reduced Genome Serves As Primary Energy Storage in the Marine Flatworm Paracatenula
    Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula Oliver Jäcklea, Brandon K. B. Seaha, Målin Tietjena, Nikolaus Leischa, Manuel Liebekea, Manuel Kleinerb,c, Jasmine S. Berga,d, and Harald R. Gruber-Vodickaa,1 aMax Planck Institute for Marine Microbiology, 28359 Bremen, Germany; bDepartment of Geoscience, University of Calgary, AB T2N 1N4, Canada; cDepartment of Plant & Microbial Biology, North Carolina State University, Raleigh, NC 27695; and dInstitut de Minéralogie, Physique des Matériaux et Cosmochimie, Université Pierre et Marie Curie, 75252 Paris Cedex 05, France Edited by Margaret J. McFall-Ngai, University of Hawaii at Manoa, Honolulu, HI, and approved March 1, 2019 (received for review November 7, 2018) Hosts of chemoautotrophic bacteria typically have much higher thrive in both free-living environmental and symbiotic states, it is biomass than their symbionts and consume symbiont cells for difficult to attribute their genomic features to either functions nutrition. In contrast to this, chemoautotrophic Candidatus Riegeria they provide to their host, or traits that are necessary for envi- symbionts in mouthless Paracatenula flatworms comprise up to ronmental survival or to both. half of the biomass of the consortium. Each species of Paracate- The smallest genomes of chemoautotrophic symbionts have nula harbors a specific Ca. Riegeria, and the endosymbionts have been observed for the gammaproteobacterial symbionts of ves- been vertically transmitted for at least 500 million years. Such icomyid clams that are directly transmitted between host genera- prolonged strict vertical transmission leads to streamlining of sym- tions (13, 14). Such strict vertical transmission leads to substantial biont genomes, and the retained physiological capacities reveal and ongoing genome reduction.
    [Show full text]
  • Physiological Homogeneity Among the Endosymbionts of Riftia Pachyptila and Tevnia Jerichonana Revealed by Proteogenomics
    The ISME Journal (2012) 6, 766–776 & 2012 International Society for Microbial Ecology All rights reserved 1751-7362/12 www.nature.com/ismej ORIGINAL ARTICLE Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics Antje Gardebrecht1,2, Stephanie Markert2,3, Stefan M Sievert4, Horst Felbeck5, Andrea Thu¨ rmer6, Dirk Albrecht2,7, Antje Wollherr6, Johannes Kabisch2,3, Nadine Le Bris8,9, Ru¨ diger Lehmann6, Rolf Daniel6, Heiko Liesegang6, Michael Hecker2,3,7 and Thomas Schweder1,2,3 1Department of Pharmaceutical Biotechnology, Ernst-Moritz-Arndt-University, Greifswald, Germany; 2ZIK FunGene, Ernst-Moritz-Arndt-University, Greifswald, Germany; 3Institute of Marine Biotechnology, Greifswald, Germany; 4Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA; 5Marine Biology Research Division, Scripps Institution of Oceanography, San Diego, CA, USA; 6Go¨ttingen Genomics Laboratory, Georg-August-University, Go¨ttingen, Germany; 7Institute for Microbiology, Ernst-Moritz-Arndt-University, Greifswald, Germany; 8Benthic Ecogeochemistry Laboratory, Universite´ Pierre et Marie Curie, Banyuls-sur-Mer, France and 9Laboratoire Environnement Profond, Ifremer, Brest, France The two closely related deep-sea tubeworms Riftia pachyptila and Tevnia jerichonana both rely exclusively on a single species of sulfide-oxidizing endosymbiotic bacteria for their nutrition. They do, however, thrive in markedly different geochemical conditions. A detailed proteogenomic comparison of
    [Show full text]
  • Are There Enough Known Parameters to Construct a Probability
    41stSaas‐Fee course from Planets to Life 3‐9 April 2011 Lecture 9A. The probability of acquiring life elsewhere and the origin of eukaryotes • Are there enough known parameters to construct a probability equaon for an origin of an Earth life? • What is required to get a eukaryoc cell? • What drives mulcellularity? • Are these extremely rare events? 41stSaas‐Fee course from Planets to Life 3‐9 April 2011 Lecture 9 B – The origin of eukaryotes • The endosymbiosis theory for the origin of eukaryotes • Symbiosis today – a couple of examples • The early stages in the formaon of eukaryotes is not a rare event Important differences between eukaryotes and prokaryotes • Unity of biochemistry and genec code • Eukaryotes have mulple chromosomes, prokaryotes have a singular circular chromosome • Eukaryotes genomes are full of non‐coding DNA and genes encoding RNA • Eukaryoc translaon and transcripon are separate, prokaryotes they happen concomitantly • Eukaryoc informaon genes are Archaea, operaonal genes are Bacteria • Most eukaryote genes have no known prokaryoc homologues • Archaea are adapted to energy stress and can make due with lile free energy; Bacteria and eukaryotes reproduce using reliable energy sources Important differences between eukaryotes and prokaryotes • Unity of biochemistry and genec code • Eukaryotes have mulple chromosomes, prokaryotes have a singular circular chromosome • Eukaryotes genomes are full of non‐coding DNA and genes encoding RNA • Eukaryoc translaon and transcripon are separate, prokaryotes they happen concomitantly
    [Show full text]
  • Catenulida, Platyhelminthes) and Its Intracellular Symbionts
    Zoomorphology (2011) 130:261–271 DOI 10.1007/s00435-011-0135-y ORIGINAL PAPER Microanatomy of the trophosome region of Paracatenula cf. polyhymnia (Catenulida, Platyhelminthes) and its intracellular symbionts Nikolaus Leisch • Ulrich Dirks • Harald R. Gruber-Vodicka • Markus Schmid • Wolfgang Sterrer • Jo¨rg A. Ott Received: 13 June 2011 / Revised: 11 August 2011 / Accepted: 13 August 2011 / Published online: 14 September 2011 Ó The Author(s) 2011. This article is published with open access at Springerlink.com Abstract Marine catenulid platyhelminths of the genus morphologically reduced and most likely not functional. Paracatenula lack mouth, pharynx and gut. They live in a Cells containing needle-like inclusions in the reference symbiosis with intracellular bacteria which are restricted to species Paracatenula polyhymnia Sterrer and Rieger, 1974 the body region posterior to the brain. The symbiont- were thought to be sperm, and the inclusions interpreted as housing cells (bacteriocytes) collectively form the tropho- the sperm nucleus. Our analysis of similar cells and their some tissue, which functionally replaces the digestive tract. inclusions by EDX and Raman microspectroscopy docu- It constitutes the largest part of the body and is the most ments an inorganic spicule consisting of a unique magne- important synapomorphy of this group. While some other sium–phosphate compound. Furthermore, we identify the features of the Paracatenula anatomy have already been neoblast stem cells located underneath the epidermis. analyzed, an in-depth analysis of the trophosome region Except for the modifications due to the symbiotic lifestyle was missing. Here, we identify and characterize the com- and the enigmatic spicule cells, the organization of Para- position of the trophosome and its surrounding tissue by catenula cf.
    [Show full text]
  • Mimivirus and Mimiviridae: Giant Viruses with an Increasing Number of Potential Hosts, Including Corals and Sponges
    Journal of Invertebrate Pathology 101 (2009) 172–180 Contents lists available at ScienceDirect Journal of Invertebrate Pathology journal homepage: www.elsevier.com/locate/yjipa Mimivirus and Mimiviridae: Giant viruses with an increasing number of potential hosts, including corals and sponges Jean-Michel Claverie a,*, Renata Grzela a, Audrey Lartigue a, Alain Bernadac b, Serge Nitsche c, Jean Vacelet d, Hiroyuki Ogata a, Chantal Abergel a a Structural and Genomic Information Laboratory, CNRS-UPR 2589, IFR-88, Parc Scientifique de Luminy, Case 934, FR-13288 Marseille, France b Mediterranean Institute of Microbiology, IFR-88, FR-13402 Marseille, France c CRMC-N, Parc Scientifique de Luminy, Case 913, 13288 Marseille, France d DIMAR, UMR 6540, Station Marine d’Endoume, Station Marine d’Endoume, FR- 13007 Marseille, France article info abstract Article history: Mimivirus, a giant DNA virus (i.e. ‘‘girus”) infecting species of the genus Acanthamoeba, was first identi- Received 14 January 2009 fied in 2003. With a particle size of 0.7 lm in diameter, and a genome size of 1.2 Mb encoding more than Accepted 6 March 2009 900 proteins, it is the most complex virus described to date. Beyond its unusual size, the Mimivirus gen- Available online 18 May 2009 ome was found to contain the first viral homologues of many genes thought to be the trademark of cel- lular organisms, such as central components of the translation apparatus. These findings revived the Keywords: debate on the origin of DNA viruses, and the role they might have played in the emergence of eukaryotes. Mimivirus Published and ongoing studies on Mimivirus continue to lead to unexpected findings concerning a variety Mimiviridae of aspects, such as the structure of its particle, unique features of its replication cycle, or the distribution Nucleocytoplasmic Large DNA virus Sponge and abundance of Mimivirus relatives in the oceans.
    [Show full text]
  • Genomic, Transcriptomic, and Proteomic Insights Into the Symbiosis of Deep-Sea Tubeworm Holobionts
    The ISME Journal (2020) 14:135–150 https://doi.org/10.1038/s41396-019-0520-y ARTICLE Genomic, transcriptomic, and proteomic insights into the symbiosis of deep-sea tubeworm holobionts 1 1 1 1 1 2 2 3,4 Yi Yang ● Jin Sun ● Yanan Sun ● Yick Hang Kwan ● Wai Chuen Wong ● Yanjie Zhang ● Ting Xu ● Dong Feng ● 5 2 1 Yu Zhang ● Jian-Wen Qiu ● Pei-Yuan Qian Received: 5 June 2019 / Revised: 11 August 2019 / Accepted: 25 August 2019 / Published online: 8 October 2019 © The Author(s) 2019. This article is published with open access Abstract Deep-sea hydrothermal vents and methane seeps are often densely populated by animals that host chemosynthetic symbiotic bacteria, but the molecular mechanisms of such host-symbiont relationship remain largely unclear. We characterized the symbiont genome of the seep-living siboglinid Paraescarpia echinospica and compared seven siboglinid-symbiont genomes. Our comparative analyses indicate that seep-living siboglinid endosymbionts have more virulence traits for establishing infections and modulating host-bacterium interaction than the vent-dwelling species, and have a high potential to resist environmental hazards. Metatranscriptome and metaproteome analyses of the Paraescarpia holobiont reveal that the fi fi 1234567890();,: 1234567890();,: symbiont is highly versatile in its energy use and ef cient in carbon xation. There is close cooperation within the holobiont in production and supply of nutrients, and the symbiont may be able to obtain nutrients from host cells using virulence factors. Moreover, the symbiont is speculated to have evolved strategies to mediate host protective immunity, resulting in weak expression of host innate immunity genes in the trophosome.
    [Show full text]
  • Actual Distribution of Bacteriocytes in the Trophosome of a Beard Worm
    Actual distribution of bacteriocytes in the trophosome of a beard worm (Oligobrachia mashikoi, Siboglinidae, Annelida): Clarification using whole-mount in situ hybridization 著者 Deguchi M., Kubota N., Matsuno A., Kanemori M., Fukumori Y., Sasayama Yuichi journal or Acta Zoologica publication title volume 88 number 2 page range 129-135 year 2007-04-01 URL http://hdl.handle.net/2297/6761 doi: 10.1111/j.1463-6395.2007.00260.x In situ hybridisation in beard worm ・ Deguchi et al. Actual distribution of bacteriocytes in the trophosome of a beard worm (Oligobrachia mashikoi, Siboglinidae, Annelida): Clarification using whole-mount in situ hybridisation M. Deguchi, N. Kubota, A. Matsuno1, M. Kanemori, Y. Fukumori and Y. Sasayama2 Department of Life Science, Graduate School of Natural Science and Technology, Kanazawa University, Kanazawa 920-1192, Japan; 1Department of Biological Science, Faculty of Life and Environmental Science, Shimane University, Matsue 690-0823, Japan; 2Noto Marine Laboratory, Institute of Nature and Environmental Technology, Kanazawa University, Kanazawa 920-1192, Japan Key words: beard worms, symbiotic bacteria, 16S rRNA, in situ hybridisation Abstract M. Deguchi, N. Kubota, A. Matsuno, M. Kanemori, Y. Fukumori and Y. Sasayama 2006. Actual distribution of bacteriocytes in the trophosome of a beard worm (Oligobrachia mashikoi, Siboglinidae, Annelida): Clarification using whole-mount in situ hybridisation.―Acta Zoologica (Stockholm) Beard worms (Siboglinidae, Polycheata) lack a mouth and a digestive tract and harbour chaemosynthetic bacteria in the bacteriocytes of the trophosome. Since beard worms depend on the organic compounds produced by the bacteria for nourishment, the bacteriocytes should be efficient in exchanging various substances with body fluids. For this reason, it is important to determine how the bacteriocytes are organised in the trophosome.
    [Show full text]
  • Cold Seeps: Marine Ecosystems Based on Hydrocarbons
    sis_16_RZ.qxq:Layout 1 31.08.2010 18:41 Uhr Seite 60 Image courtesy of MARUM, Bremen University Cold seeps: marine ecosystems based on hydrocarbons Thousands of white crabs grazing on an extensive mussel bed at a cold seep off the coast of Pakistan Glossary Chemosymbiosis: a symbi- David Fischer takes us on a trip to the bot- otic association between a tom of the sea to learn about cold seeps – multi-cellular organism (the host), which provides a their ecosystems, potential fuels, and pos- protected environment, and a bacterium that oxidises sible involvement in global warming. specific chemicals to obtain energy and synthe- What are cold seeps? These hydrocarbons form up to sev- sise organic carbon that is Cold seeps are often oases for eral kilometres below the surface of required by the host microbial and macrofaunal life on the the sediment when organic matter is Methanotrophic: a methan- sea floor – similar to hydrothermal degraded by either high temperatures otrophic organism vents, where hot water emerges or micro-organisms. When the hydro- metabolises methane as its under high pressure, several kilome- carbons are produced in very large only source of energy and tres below the sea (see Little, 2010). In quantities, or where tectonic stress carbon contrast to hydrothermal vents, how- Pore water: the water that ever, cold seeps can occur at water fills the space between depths of between a few metres and individual grains of sedi- several kilometres, often along conti- ment nental margins. Thiotrophic: a thiotrophic They are places where hydrocarbons organism oxidises sulphur – mostly methane but also ethane, compounds propane, or even oil – seep from the sediment.
    [Show full text]
  • Section 1. Information Used in the Assessment of Environmental Applications of Acinetobacter
    148 - PART 2. DOCUMENTS ON MICRO-ORGANISMS Section 1. Information used in the assessment of environmental applications of Acinetobacter 1. Introduction This document represents a snapshot of current information that may be relevant to risk assessments of micro-organisms in the genus Acinetobacter. This document presents information in the scientific literature and other publicly-available literature about the known characteristics of Acinetobacter species encountered in various environments (including clinical settings) and with diverse potential applications (environmental, industrial, agricultural, and medical). In considering information that should be presented on this taxonomic grouping, the Task Group has discussed the list of topics presented in “The Blue Book” (i.e. Recombinant DNA Safety Considerations (OECD, 1986) and attempted to pare down that list to eliminate duplications as well as those topics whose meaning is unclear, and to rearrange the presentation of the topics covered to be more easily understood. 2. General considerations Members of the genus Acinetobacter have been known for many years, often under other generic names. Detailed accounts of their history and nomenclature are found in reviews (Grimont and Bouvet, 1991; Dijkshoorn, 1996; Towner, 1996), or as chapters in books whose appearance testifies to the growing interest and importance of this group of bacteria (Towner, 1991b; Bergogne-Bérézin et al., 1996). The genus Acinetobacter includes Gram-negative coccobacilli, with a DNA G + C content of 39-47 mol %. Physiologically, they are strict aerobes, non-motile, catalase positive and oxidase negative. They grow well on complex media and can grow on simple mineral medium with a single carbon source, including acetate, fatty acids, and sometimes hydrocarbons.
    [Show full text]