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The Ferns and Their Relatives (Lycophytes)
N M D R maidenhair fern Adiantum pedatum sensitive fern Onoclea sensibilis N D N N D D Christmas fern Polystichum acrostichoides bracken fern Pteridium aquilinum N D P P rattlesnake fern (top) Botrychium virginianum ebony spleenwort Asplenium platyneuron walking fern Asplenium rhizophyllum bronze grapefern (bottom) B. dissectum v. obliquum N N D D N N N R D D broad beech fern Phegopteris hexagonoptera royal fern Osmunda regalis N D N D common woodsia Woodsia obtusa scouring rush Equisetum hyemale adder’s tongue fern Ophioglossum vulgatum P P P P N D M R spinulose wood fern (left & inset) Dryopteris carthusiana marginal shield fern (right & inset) Dryopteris marginalis narrow-leaved glade fern Diplazium pycnocarpon M R N N D D purple cliff brake Pellaea atropurpurea shining fir moss Huperzia lucidula cinnamon fern Osmunda cinnamomea M R N M D R Appalachian filmy fern Trichomanes boschianum rock polypody Polypodium virginianum T N J D eastern marsh fern Thelypteris palustris silvery glade fern Deparia acrostichoides southern running pine Diphasiastrum digitatum T N J D T T black-footed quillwort Isoëtes melanopoda J Mexican mosquito fern Azolla mexicana J M R N N P P D D northern lady fern Athyrium felix-femina slender lip fern Cheilanthes feei net-veined chain fern Woodwardia areolata meadow spike moss Selaginella apoda water clover Marsilea quadrifolia Polypodiaceae Polypodium virginanum Dryopteris carthusiana he ferns and their relatives (lycophytes) living today give us a is tree shows a current concept of the Dryopteridaceae Dryopteris marginalis is poster made possible by: { Polystichum acrostichoides T evolutionary relationships among Onocleaceae Onoclea sensibilis glimpse of what the earth’s vegetation looked like hundreds of Blechnaceae Woodwardia areolata Illinois fern ( green ) and lycophyte Thelypteridaceae Phegopteris hexagonoptera millions of years ago when they were the dominant plants. -
Reprint Requests, Current Address: Dept
American Journal of Botany 88(6): 1118±1130. 2001. RBCL DATA REVEAL TWO MONOPHYLETIC GROUPS OF FILMY FERNS (FILICOPSIDA:HYMENOPHYLLACEAE)1 KATHLEEN M. PRYER,2,5 ALAN R. SMITH,3 JEFFREY S. HUNT,2 AND JEAN-YVES DUBUISSON4 2Department of Botany, The Field Museum of Natural History, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 USA; 3University Herbarium, 1001 Valley Life Sciences Building #2465, University of California, Berkeley, California 94720-2465 USA; and 4Laboratoire de PaleÂobotanique et PaleÂoeÂcologie, FR3-CNRS ``Institut d'E cologie,'' Universite Pierre et Marie Curie, 12 rue Cuvier, F-75005 Paris, France The ``®lmy fern'' family, Hymenophyllaceae, is traditionally partitioned into two principal genera, Trichomanes s.l. (sensu lato) and Hymenophyllum s.l., based upon sorus shape characters. This basic split in the family has been widely debated this past century and hence was evaluated here by using rbcL nucleotide sequence data in a phylogenetic study of 26 ®lmy ferns and nine outgroup taxa. Our results con®rm the monophyly of the family and provide robust support for two monophyletic groups that correspond to the two classical genera. In addition, we show that some taxa of uncertain af®nity, such as the monotypic genera Cardiomanes and Serpyllopsis, and at least one species of Microtrichomanes, are convincingly included within Hymenophyllum s.l. The tubular- or conical-based sorus that typi®es Trichomanes s.l. and Cardiomanes, the most basal member of Hymenophyllum s.l., is a plesiomorphic character state for the family. Tubular-based sori occurring in other members of Hymenophyllum s.l. are most likely derived independently and more than one time. -
81 Vascular Plant Diversity
f 80 CHAPTER 4 EVOLUTION AND DIVERSITY OF VASCULAR PLANTS UNIT II EVOLUTION AND DIVERSITY OF PLANTS 81 LYCOPODIOPHYTA Gleicheniales Polypodiales LYCOPODIOPSIDA Dipteridaceae (2/Il) Aspleniaceae (1—10/700+) Lycopodiaceae (5/300) Gleicheniaceae (6/125) Blechnaceae (9/200) ISOETOPSIDA Matoniaceae (2/4) Davalliaceae (4—5/65) Isoetaceae (1/200) Schizaeales Dennstaedtiaceae (11/170) Selaginellaceae (1/700) Anemiaceae (1/100+) Dryopteridaceae (40—45/1700) EUPHYLLOPHYTA Lygodiaceae (1/25) Lindsaeaceae (8/200) MONILOPHYTA Schizaeaceae (2/30) Lomariopsidaceae (4/70) EQifiSETOPSIDA Salviniales Oleandraceae (1/40) Equisetaceae (1/15) Marsileaceae (3/75) Onocleaceae (4/5) PSILOTOPSIDA Salviniaceae (2/16) Polypodiaceae (56/1200) Ophioglossaceae (4/55—80) Cyatheales Pteridaceae (50/950) Psilotaceae (2/17) Cibotiaceae (1/11) Saccolomataceae (1/12) MARATTIOPSIDA Culcitaceae (1/2) Tectariaceae (3—15/230) Marattiaceae (6/80) Cyatheaceae (4/600+) Thelypteridaceae (5—30/950) POLYPODIOPSIDA Dicksoniaceae (3/30) Woodsiaceae (15/700) Osmundales Loxomataceae (2/2) central vascular cylinder Osmundaceae (3/20) Metaxyaceae (1/2) SPERMATOPHYTA (See Chapter 5) Hymenophyllales Plagiogyriaceae (1/15) FIGURE 4.9 Anatomy of the root, an apomorphy of the vascular plants. A. Root whole mount. B. Root longitudinal-section. C. Whole Hymenophyllaceae (9/600) Thyrsopteridaceae (1/1) root cross-section. D. Close-up of central vascular cylinder, showing tissues. TABLE 4.1 Taxonomic groups of Tracheophyta, vascular plants (minus those of Spermatophyta, seed plants). Classes, orders, and family names after Smith et al. (2006). Higher groups (traditionally treated as phyla) after Cantino et al. (2007). Families in bold are described in found today in the Selaginellaceae of the lycophytes and all the pericycle or endodermis. Lateral roots penetrate the tis detail. -
Hymenophyllaceae) and a New Combination in Trichomanes L
Muelleria 39: 75–78 Published online in advance of the print edition, 21 December 2020 Comparison of modern classifications for filmy ferns (Hymenophyllaceae) and a new combination in Trichomanes L. for the filmy fern Macroglena brassii Croxall, from Queensland, Australia Daniel J. Ohlsen Royal Botanic Gardens Victoria, Birdwood Avenue, Melbourne, Victoria 3004, Australia; email: [email protected] Introduction Abstract Contemporary Hymenophyllaceae The filmy ferns (Hymenophyllaceae) are a distinctive group of treatments typically follow one of leptosporangiate ferns distinguished by a thin membranous lamina that two classifications that recognise is usually one cell thick (or occasionally up to four cells thick in some parts monophyletic genera. One comprises of the lamina) and marginal sori that are protected by an indusium in the nine genera, while the other recognises form of a cup-shaped or bilabiate involucre (Ebihara et al. 2007). Forty nine two genera, Hymenophyllum Sm. and Trichomanes L. Combinations exist for species of this family occur in Australia, of which 15 are probably endemic all Australian species that allow the (Green 1994; Bostock & Spokes 1998; Ebihara & Iwatsuki 2007). Two major former classification to be adopted lineages exist within the Hymenophyllaceae that largely correspond to the in Australia. However, genera of the two original genera recognised within the family: Hymenophyllum Sm. and former classification tend to be poorly Trichomanes L. (Pryer et al. 2001; Hennequin et al. 2003; Ebihara et al. 2004). defined morphologically compared to Numerous other classifications have been proposed that recognise several the latter classification. All Australian species have available combinations in additional genera (e.g. -
Supplementary Table 1
Supplementary Table 1 SAMPLE CLADE ORDER FAMILY SPECIES TISSUE TYPE CAPN Eusporangiate Monilophytes Equisetales Equisetaceae Equisetum diffusum developing shoots JVSZ Eusporangiate Monilophytes Equisetales Equisetaceae Equisetum hyemale sterile leaves/branches NHCM Eusporangiate Monilophytes Marattiales Marattiaceae Angiopteris evecta developing shoots UXCS Eusporangiate Monilophytes Marattiales Marattiaceae Marattia sp. leaf BEGM Eusporangiate Monilophytes Ophioglossales Ophioglossaceae Botrypus virginianus Young sterile leaf tissue WTJG Eusporangiate Monilophytes Ophioglossales Ophioglossaceae Ophioglossum petiolatum leaves, stalk, sporangia QHVS Eusporangiate Monilophytes Ophioglossales Ophioglossaceae Ophioglossum vulgatum EEAQ Eusporangiate Monilophytes Ophioglossales Ophioglossaceae Sceptridium dissectum sterile leaf QVMR Eusporangiate Monilophytes Psilotales Psilotaceae Psilotum nudum developing shoots ALVQ Eusporangiate Monilophytes Psilotales Psilotaceae Tmesipteris parva Young fronds PNZO Cyatheales Culcitaceae Culcita macrocarpa young leaves GANB Cyatheales Cyatheaceae Cyathea (Alsophila) spinulosa leaves EWXK Cyatheales Thyrsopteridaceae Thyrsopteris elegans young leaves XDVM Gleicheniales Gleicheniaceae Sticherus lobatus young fronds MEKP Gleicheniales Dipteridaceae Dipteris conjugata young leaves TWFZ Hymenophyllales Hymenophyllaceae Crepidomanes venosum young fronds QIAD Hymenophyllales Hymenophyllaceae Hymenophyllum bivalve young fronds TRPJ Hymenophyllales Hymenophyllaceae Hymenophyllum cupressiforme young fronds and sori -
Deep Learning Applications for Evaluating Taxonomic and Morphological Diversity in Ferns
Deep learning applications for evaluating taxonomic and morphological diversity in ferns Alex White Mike Trizna, Sylvia Orli, Eric Schuettpelz, Paul Frandsen, Rebecca Dikow, Larry Dorr Smithsonian Institution National Museum of Natural History – Dept. of Botany Data Science Lab Where are we at? U.S. National Herb: 2 million specimens are digitized Fern collection is completely digitized: 215,000 specimens with global representation 86 genera with >500 specimens Past work focused on binary classification: Mercury staining and 2 genera of clubmoss Build a more robust taxonomic classification model? Will taxonomic classification inform us about ecological differences in shape? Schuettpelz et al. 2017 Equisetopsida, Equisetales, Equisetaceae, Equisetum Marattiopsida, Marattiales, Marattiaceae, Angiopteris 1.0 Marattiopsida, Marattiales, Marattiaceae, Danaea Polypodiopsida, Cyatheales, Cyatheaceae, Alsophila Polypodiopsida, Cyatheales, Cyatheaceae, Cyathea Polypodiopsida, Cyatheales, Cyatheaceae, Sphaeropteris Polypodiopsida, Cyatheales, Dicksoniaceae, Dicksonia Polypodiopsida, Cyatheales, Dicksoniaceae, Lophosoria Polypodiopsida, Gleicheniales, Gleicheniaceae, Dicranopteris 0.8 Polypodiopsida, Gleicheniales, Gleicheniaceae, Sticherus Polypodiopsida, Hymenophyllales, Hymenophyllaceae, Abrodictyum Polypodiopsida, Hymenophyllales, Hymenophyllaceae, Crepidomanes Polypodiopsida, Hymenophyllales, Hymenophyllaceae, Didymoglossum Where are we at? Polypodiopsida, Hymenophyllales, Hymenophyllaceae, Hymenophyllum Polypodiopsida, Hymenophyllales, Hymenophyllaceae, -
The Hymenophyllaceae of the Pacific Area. 1. Hymenophyllum Subgenus
Bull. Natl. Mus. Nat. Sci., Ser. B, 33(2), pp. 55–68, June 22, 2007 The Hymenophyllaceae of the Pacific Area. 1. Hymenophyllum subgenus Hymenophyllum Atsushi Ebihara1 and Kunio Iwatsuki2 1 Department of Botany, National Museum of Nature and Science, Amakubo 4–1–1, Tsukuba 305–0005, Japan E-mail: [email protected] 2 The Museum of Nature and Human Activities, Hyogo, Yayoigaoka 6-chome, Sanda 669–1546, Japan E-mail: [email protected] Abstract Pacific species of Hymenophyllum subgen. Hymenophyllum redefined by Ebihara et al. (2006) are enumerated. In total, 26 species are recorded in the studied area, and synonymies, infor- mation of the type material, distribution and cytological records of each species are provided. Key words : Australasia, filmy fern, Hymenophyllaceae, Hymenophyllum, Oceania, Pteridophyta. Hymenophyllaceae or filmy ferns are one of completely lack their distribution. After a long the basal lineages of leptosporangiate ferns controversy on the classification of Hymenophyl- (Hasebe et al., 1995; Pryer et al., 2004) compris- laceae, Ebihara et al. (2006) advocated a new ing about 600 species (Iwatsuki, 1990), mostly system principally maintaining natural groups distributed in the tropics and temperate regions. recognized by molecular phylogeny, which is In the Pacific area, this family has a great diversi- adopted here. See Ebihara et al. (2006) for syn- ty, including many isolated lineages or monotyp- onymy of each higher taxon. ic ‘genera’, and occupies a high ratio in species number of the pteridophyte flora (e. g., 15% in Genus 1. Hymenophyllum Sm., Mém. Acad. New Zealand, Brownsey and Smith-Dodsworth, Sci. Turin 5: 418 (1793). -
Vascular Plant Families of the United States (With Common Names and Numerical Summary)
Humboldt State University Digital Commons @ Humboldt State University Botanical Studies Open Educational Resources and Data 2-21-2020 Vascular Plant Families of the United States (with Common Names and Numerical Summary) James P. Smith Jr Humboldt State University, [email protected] Follow this and additional works at: https://digitalcommons.humboldt.edu/botany_jps Part of the Botany Commons Recommended Citation Smith, James P. Jr, "Vascular Plant Families of the United States (with Common Names and Numerical Summary)" (2020). Botanical Studies. 97. https://digitalcommons.humboldt.edu/botany_jps/97 This Flora of the United States and North America is brought to you for free and open access by the Open Educational Resources and Data at Digital Commons @ Humboldt State University. It has been accepted for inclusion in Botanical Studies by an authorized administrator of Digital Commons @ Humboldt State University. For more information, please contact [email protected]. VASCULAR PLANT FAMILIES OF THE UNITED STATES (WITH COMMON NAMES AND NUMERICAL SUMMARY) James P. Smith Jr. Professor Emeritus of Botany Department of Biological Sciences Humboldt State University Arcata, California 21 February 2020 There are four groups of vascular plants — lycophytes (often called fern allies), ferns, gymnosperms, and flowering plants (angiosperms). This inventory includes native plants, along with introduced weeds, crops, and ornamentals that are naturalized and that maintain themselves without our assistance. I have also included plants that have not been collected in recent years and may well be extinct or extirpated. The geographic coverage is the conterminous or contiguous United States, the region known more informally as the “lower 48.” Alaska, Hawai’i, Puerto Rico, and the U. -
A Taxonomic Revision of Hymenophyllaceae
BLUMEA 51: 221–280 Published on 27 July 2006 http://dx.doi.org/10.3767/000651906X622210 A TAXONOMIC REVISION OF HYMENOPHYLLACEAE ATSUSHI EBIHARA1, 2, JEAN-YVES DUBUISSON3, KUNIO IWATSUKI4, SABINE HENNEQUIN3 & MOTOMI ITO1 SUMMARY A new classification of Hymenophyllaceae, consisting of nine genera (Hymenophyllum, Didymoglos- sum, Crepidomanes, Polyphlebium, Vandenboschia, Abrodictyum, Trichomanes, Cephalomanes and Callistopteris) is proposed. Every genus, subgenus and section chiefly corresponds to the mono- phyletic group elucidated in molecular phylogenetic analyses based on chloroplast sequences. Brief descriptions and keys to the higher taxa are given, and their representative members are enumerated, including some new combinations. Key words: filmy ferns, Hymenophyllaceae, Hymenophyllum, Trichomanes. INTRODUCTION The Hymenophyllaceae, or ‘filmy ferns’, is the largest basal family of leptosporangiate ferns and comprises around 600 species (Iwatsuki, 1990). Members are easily distin- guished by their usually single-cell-thick laminae, and the monophyly of the family has not been questioned. The intrafamilial classification of the family, on the other hand, is highly controversial – several fundamentally different classifications are used by indi- vidual researchers and/or areas. Traditionally, only two genera – Hymenophyllum with bivalved involucres and Trichomanes with tubular involucres – have been recognized in this family. This scheme was expanded by Morton (1968) who hierarchically placed many subgenera, sections and subsections under -
Fern Gazette Vol 18 Part 1 V7.Qxd
Fern Gazette V18 P2 v6.qxd 01/01/2008 16:39 Page 53 FERN GAZ. 18(2):53-58. 2007 53 SYSTEMATICS OF TRICHOMANES (HYMENOPHYLLACEAE: PTERIDOPHYTA), PROGRESS AND FUTURE INTERESTS A. EBIHARA1, J.-Y. DUBUISSON2, K. IWATSUKI3 & M. ITO1 1Department of System Sciences, Graduate School of Arts and Sciences, the University of Tokyo, 3-8-1 Komaba, Tokyo 153-8902, Japan, 2Université Pierre et Marie Curie, 12 rue Cuvier, F-75005 Paris, France, 3The Museum of Nature and Human Activities, Hyogo, Yayoigaoka 6-chome, Sanda 669-1546, Japan (1Email: [email protected]; present address: Department of Botany, 4-1-1 Amakubo, Tsukuba 305-0005, Japan) Key words: filmy ferns, rbcL, Trichomanes ABSTRACT Trichomanes L. sensu lato (s.l.), is a large group of Hymenophyllaceae to which ca. 250 species are attributed, distributed from the tropics to temperate regions around the world,. Their life forms and morphology are more diversified than those of the other large filmy-fern genus Hymenophyllum. Phylogenetic analyses were performed based on the rbcL sequences of 81 Trichomanes taxa, covering most of the major groups within the genus, in addition to morphological, anatomical and cytological investigations, that offer a number of insights concerning evolution of the genus. Eight robustly supported clades are recognized within Trichomanes, while some traditional trichomanoid taxa (e.g., Pleuromanes) are transferred to the Hymenophyllum clade. INTRODUCTION Because of their simplified morphology among pteridophytes, filmy ferns (Hymenophyllaceae) have attracted the attention of many researchers, especially those interested in evolution and phylogeny. The family’s basal placement among leptosporangiate ferns was already suggested by morphological evidence (oblique annuli of sporangia; Bower, 1926) and supported by recent molecular phylogenetic work (Pryer et al., 2004). -
Joel H. Nitta
Joel H. Nitta PROJECT RESEARCH ASSOCIATE Department of Biological Sciences, Graduate School of Science, The University of Tokyo [email protected] | www.joelnitta.com | joelnitta | Joel H. Nitta Studying biology at the intersection of ecology and evolution from species to the globe Education Harvard University Cambridge, MA PHD IN ORGANISMIC AND EVOLUTIONARY BIOLOGY Nov. 2016 • Advisor: Prof. Charles C. Davis • Dissertation: Ecology and Evolution of the Ferns of Moorea and Tahiti, French Polynesia University of Tokyo Tokyo, Japan MS IN BIOLOGICAL SCIENCES Mar. 2010 • Advisor: Prof. Motomi Ito • Thesis: Reticulate Evolution in the Crepidomanes minutum Species Complex (Hymenophyllaceae) University of California, Berkeley Berkeley, CA BA IN INTEGRATIVE BIOLOGY AND JAPANESE LANGUAGE May 2007 • Advisor: Prof. Brent. D. Mishler • Honor’s Thesis: The Filmy Ferns of Moorea, French Polynesia: A Case Study in Integrative Taxonomy • Highest Honors in Integrative Biology • Highest Distinction in General Scholarship Skills Field Pteridophyte species identification, botanical specimen collection, field survey design Lab DNA extraction, PCR, Sanger DNA sequencing, next-gen DNA sequencing (sequence capture), gel electrophoresis, cloning Programming R, Docker, Git, bash Languages English (native), Japanese (fluent), Spanish (beginner) Teaching Certified Software Carpentry Instructor Experience Department of Biological Sciences, Graduate School of Science, The University of Tokyo Tokyo, Japan PROJECT RESEARCH ASSOCIATE Apr. 2020 - • Providing analytical support for various -omics projects. Department of Botany, National Museum of Natural History, Smithsonian Institution Washington, DC, USA PETER BUCK POSTDOCTORAL RESEARCH FELLOW Jan. 2019 - Mar. 2020 • Assembled a global dataset to analyze the the biogeographical history of ferns and lycophytes in the tropical Pacific. Department of Botany, National Museum of Nature and Science Tsukuba, Japan JAPAN SOCIETY FOR THE PROMOTION OF SCIENCE POSTDOCTORAL RESEARCH FELLOW Nov. -
Studies on Indian Hymenophyllaceae
STUDIES ON INDIAN HYMENOPHYLLACEAE Part III. Contributions to Our Knowledge ofMeringium edentulum (v.d.B. Copeland) BY A. R. RAO AND (Mlss) USHA SHARMA (Botany Department, Lucknow University) Received December 12, 1962 [Communicated by Prof. L. N. Rao, M•SC., Ph.D. (Lond.), r.ms., r.A.sc.] CONTENTS PAGE ° INTRODUCTION ...... .. 300 2. MATERIAL AND METHODS .... •. 301 3. GENERAL MORPHOLOGY ...... •. 301 4. ANATOMY- (a) Root I m .. 303 (b) Rhizome t 4 .. 303 (c) Leaf • ° .. 304 5. SUMMARY • ° 304 6. ~NCES • • O t 305 7. EXPLANATION OF PLATE 9 305 8. EXPLANATION OF TEXT-FIGURES • . 306 1. INTRODUCTION The morphological studies of two genera of Hymenophyllaceae, Crepidomanes latealatum (v.d.B) Copel. Sharma, 1960 and Hymenophyllum simonsianum. Hook. (Sharma, in press) have already been worked out. The present paper deals with the vegetative parts of a North Indian species of Meringium, M. edentulum (v.d.B.)Copel. The developmental stages of the sporangium could not be followed as adequate fertile material was not available for study. Observations on these will be published in duo course. 3OO Studies on Indian Hymenophyllaceae-- III 301 The plant comes under Hymenophyllum Linn. (Hooker and Baker, 1868, p. 68; Beddome, 1883, p. 34; Bower, 1908, p. 576; 1926, p. 250, Christensen, 1938, p. 351). According to vanden Bosch it has also been referred to Leptocionium edentulum v.d.B. (Copeland, 1938, p. 40). A comparison can also be made with H. serrulatum of Holttum (1954, p. 75) which according to Copeland is Meringium meyenianum. The material investigated resembles M. meyenianurn in every respect except that the margi- nal teeth are lacking and the margin is wavy.