cancers Article HPV Infection Leaves a DNA Methylation Signature in Oropharyngeal Cancer Affecting Both Coding Genes and Transposable Elements Diego Camuzi 1,† , Luisa Aguirre Buexm 1,†, Simone de Queiroz Chaves Lourenço 2, Davide Degli Esposti 3, Cyrille Cuenin 3, Monique de Souza Almeida Lopes 1, Francesca Manara 3, Fazlur Rahman Talukdar 3 , Zdenko Herceg 3, Luis Felipe Ribeiro Pinto 1 and Sheila Coelho Soares-Lima 1,* 1 Molecular Carcinogenesis Program, Brazilian National Cancer Institute, Rio de Janeiro CEP 20231-050, Brazil;
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[email protected]; Tel.: +55-213-207-6520 † Co-first author, these authors contributed equally to this work. Simple Summary: The HPV oncoproteins E6 and E7 can modulate the expression and activity of the maintenance DNA methyltransferase 1, suggesting that HPV carcinogenic mechanisms may include Citation: Camuzi, D.; Buexm, L.A.; Lourenço, S.d.Q.C.; Esposti, D.D.; aberrant DNA methylation. Some studies previously proposed both gene-associated DNA methylation Cuenin, C.; Lopes, M.d.S.A.; Manara, signatures and a global hypermethylation profile in HPV-positive head and neck cancer, but the F.; Talukdar, F.R.; Herceg, Z.; Ribeiro validation of such signatures and a more detailed analysis of the methylation profile of transposable Pinto, L.F.; et al.