Effects of Anthropogenic Activities on Land-Use Dynamics in an Upland Tropical Evergreen Forest in Ghana
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Accounting for Variation of Substitution Rates Through Time in Bayesian Phylogeny Reconstruction of Sapotoideae (Sapotaceae)
Molecular Phylogenetics and Evolution 39 (2006) 706–721 www.elsevier.com/locate/ympev Accounting for variation of substitution rates through time in Bayesian phylogeny reconstruction of Sapotoideae (Sapotaceae) Jenny E.E. Smedmark ¤, Ulf Swenson, Arne A. Anderberg Department of Phanerogamic Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden Received 9 September 2005; revised 4 January 2006; accepted 12 January 2006 Available online 21 February 2006 Abstract We used Bayesian phylogenetic analysis of 5 kb of chloroplast DNA data from 68 Sapotaceae species to clarify phylogenetic relation- ships within Sapotoideae, one of the two major clades within Sapotaceae. Variation in substitution rates through time was shown to be a very important aspect of molecular evolution for this data set. Relative rates tests indicated that changes in overall rate have taken place in several lineages during the history of the group and Bayes factors strongly supported a covarion model, which allows the rate of a site to vary over time, over commonly used models that only allow rates to vary across sites. Rate variation over time was actually found to be a more important model component than rate variation across sites. The covarion model was originally developed for coding gene sequences and has so far only been tested for this type of data. The fact that it performed so well with the present data set, consisting mainly of data from noncoding spacer regions, suggests that it deserves a wider consideration in model based phylogenetic inference. Repeatability of phylogenetic results was very diYcult to obtain with the more parameter rich models, and analyses with identical settings often supported diVerent topologies. -
New Genetic Markers for Sapotaceae Phylogenomics: More Than 600 Nuclear Genes Applicable from Family to Population Levels
Molecular Phylogenetics and Evolution 160 (2021) 107123 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev New genetic markers for Sapotaceae phylogenomics: More than 600 nuclear genes applicable from family to population levels Camille Christe a,b,*,1, Carlos G. Boluda a,b,1, Darina Koubínova´ a,c, Laurent Gautier a,b, Yamama Naciri a,b a Conservatoire et Jardin botaniques, 1292 Chamb´esy, Geneva, Switzerland b Laboratoire de botanique syst´ematique et de biodiversit´e de l’Universit´e de Gen`eve, Department of Botany and Plant Biology, 1292 Chamb´esy, Geneva, Switzerland c Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchatel,^ Rue Emile-Argand 11, 2000 Neuchatel,^ Switzerland ARTICLE INFO ABSTRACT Keywords: Some tropical plant families, such as the Sapotaceae, have a complex taxonomy, which can be resolved using Conservation Next Generation Sequencing (NGS). For most groups however, methodological protocols are still missing. Here Gene capture we identified531 monocopy genes and 227 Short Tandem Repeats (STR) markers and tested them on Sapotaceae STR using target capture and NGS. The probes were designed using two genome skimming samples from Capur Phylogenetics odendron delphinense and Bemangidia lowryi, both from the Tseboneae tribe, as well as the published Manilkara Population genetics Species tree zapota transcriptome from the Sapotoideae tribe. We combined our probes with 261 additional ones previously Tropical trees published and designed for the entire angiosperm group. On a total of 792 low-copy genes, 638 showed no signs of paralogy and were used to build a phylogeny of the family with 231 individuals from all main lineages. -
Perennial Edible Fruits of the Tropics: an and Taxonomists Throughout the World Who Have Left Inventory
United States Department of Agriculture Perennial Edible Fruits Agricultural Research Service of the Tropics Agriculture Handbook No. 642 An Inventory t Abstract Acknowledgments Martin, Franklin W., Carl W. Cannpbell, Ruth M. Puberté. We owe first thanks to the botanists, horticulturists 1987 Perennial Edible Fruits of the Tropics: An and taxonomists throughout the world who have left Inventory. U.S. Department of Agriculture, written records of the fruits they encountered. Agriculture Handbook No. 642, 252 p., illus. Second, we thank Richard A. Hamilton, who read and The edible fruits of the Tropics are nnany in number, criticized the major part of the manuscript. His help varied in form, and irregular in distribution. They can be was invaluable. categorized as major or minor. Only about 300 Tropical fruits can be considered great. These are outstanding We also thank the many individuals who read, criti- in one or more of the following: Size, beauty, flavor, and cized, or contributed to various parts of the book. In nutritional value. In contrast are the more than 3,000 alphabetical order, they are Susan Abraham (Indian fruits that can be considered minor, limited severely by fruits), Herbert Barrett (citrus fruits), Jose Calzada one or more defects, such as very small size, poor taste Benza (fruits of Peru), Clarkson (South African fruits), or appeal, limited adaptability, or limited distribution. William 0. Cooper (citrus fruits), Derek Cormack The major fruits are not all well known. Some excellent (arrangements for review in Africa), Milton de Albu- fruits which rival the commercialized greatest are still querque (Brazilian fruits), Enriquito D. -
Threatened Plants Species of Guinea-Conakry: a Preliminary Checklist
Threatened plants species of Guinea-Conakry: A preliminary checklist Charlotte Couch1, Sékou Magassouba2, Saba Rokni1, Catia Canteiro1, Emma Williams1, Martin Cheek1 1 Identification and Naming, Royal Botanic Gardens Kew, Richmond, Surrey, UK. 2 Herbier National de Guinée, Conakry, Republic of Guinea Corresponding author: Charlotte Couch Email address: [email protected] PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3451v4 | CC BY 4.0 Open Access | rec: 17 Jul 2019, publ: 17 Jul 2019 Abstract Guinea-Conakry has one of the highest plant diversities in Sub-Saharan West Africa and is part of the Upper Guinean Forest ecoregion and the Guinean Forests of West Africa biodiversity hotspot. Guinea is a major supplier of the world’s bauxite and has significant reserves of high grade iron ore, it also has small reserves of diamonds, gold and uranium. As a result large areas of open cast mining exist in the country and pressure on habitats and vegetation are increasing with the need to bring revenue into the country; this is in addition to unsustainable slash and burn agriculture and a growing population. An initial list of 482 species was compiled from Lisowski’s Flore (Angiospermes) de la République de Guinée, subsequent discussion and screening reduced the list to 253. This list has since increased, through new species and range extensions, to 270 which is presented here. It is estimated that c. 7-8% of the countries flora is threatened. Rediscoveries and new species are being made in Guinea, but they are often already threatened having been discovered as part of Environmental Impact Assessments (EIAs). -
BFT323-In Search of the Forest in Cote Divoire
BOIS ET FORÊTS DES TROPIQUES, 2015, N° 323 (1) IN SEARCH OF THE FOREST IN CÔTE D’ivOIRE 73 André Aubréville1 Translation In Search of the Forest by Ilona Bossanyi2 1 Inspector-General for Water in Côte D’ivoire, parts 1 & 2 and Forests in Overseas France 2 Bois et Forêts des Tropiques Part 1 Translation French to English from the original article published the issue n° 56 of the Journal Bois et Forêts des Tropiques, November-December 1957. Part 2 (p. 89) Translation French to English from the original article issue n° 57 of the Journal Bois et Forêts des Tropiques, January-February 1958. Photo 1. Protected forest of Konin, in Côte d’Ivoire, 1950. Photograph A. Mariaux, 1950. BOIS ET FORÊTS DES TROPIQUES, 2015, N° 323 (1) André Aubréville 74 PART 1 AND 2 - IN SEARCH OF THE FOREST IN CÔTE D’ivOIRE réSumé abStraCt reSumen À LA RECHERCHE DE LA FORÊT IN Search OF THE Forest A LA BÚSQUEDA DEL BOSQUE EN CÔTE D’IVOIRE IN Côte D’ivoire EN COSTA DE MARFIL Jusqu’à 1935, on pouvait encore voir en Until 1935, tracts of virgin forest could still Hasta 1935 aún se podían ver bosques in- Côte d’Ivoire des forêts intactes le long des be seen when travelling along the roads tactos a lo largo de las carreteras de Costa routes. Depuis, avec l’extension démesu- of Côte d’Ivoire. Since then, with the un- de Marfil. Después, con la desmesurada rée de la culture du café et du riz pluvial, bridled expansion of coffee and rain-fed extensión de los cultivos del café y el arroz le défrichement s’emballe. -
Nigerian-Cameroonian Vegetation
Plant Formations in the Nigerian-Cameroonian BioProvince Peter Martin Rhind Nigerian-Cameroonian Evergreen Rain Forest These forests are often characterized by species of the Fabaceae sub-family Caesalpinioideae and species such as the endemic Calpocalyx heitzii (Fabaceae – sub- family Mimosoideae) and the regional endemic Sacoglottis gabonensis (Humiriaceae). They are more or less arranged in three strata. Large emergents and upper canopy trees reach heights of 35-50 m and include many regional endemics such as Anthonotha fragrans, Aphanocalyx margininervatus, Erythrophleum ivorensis (Caesalpinioideae), Desbordesia glaucescens (Irvingiaceae), Lovoa trichilioides (Meliaceae) and Pterocarpus soyauxii (Fabaceae). The sub-canopy at heights ranging from 20-35 m is often dominated by the endemic Calpocalyx dinklagei (Fabaceae) and regional endemics like Dialium pachyphyllum, Tetraberlinia bifoliofolia (Caesalpinioideae), Dichostemma glaucescens (Euphorbiaceae), Diogoa zenkeri, Strombosia grandifolia (Olacaceae), Greenwayodendron suaveolens (Annonaceae) and Santira trimera (Burseraceae). The under storey tends to be discontinuous and reaches about 10 m in height. Typical small trees and shrubs include endemic s like Allexis cauliflora, Rinorea albidiflora (Violaceae), Asystasia macrophylla (Acanthaceae), Crotonogyne manniana (Euphorbiaceae), Palisota ambigua (Commelinaceae) and Scaphopetalum blackii (Sterculiaceae), together with many regionally endemic species such as Diospyros preusii (Ebenaceae), Jollydora duparquetiana (Connaraceae) and -
A Preliminary Vegetation Assessment of the Mbé National Park, Monts De Cristal, Gabon
A PRELIMINARY VEGETATION ASSESSMENT OF THE MBÉ NATIONAL PARK, MONTS DE CRISTAL, GABON June 2004 A PRELIMINARY VEGETATION ASSESSMENT OF THE MBÉ NATIONAL PARK, MONTS DE CRISTAL, GABON Report compiled by: Terry Sunderland, Gretchen Walters & Yves Issembe With the technical assistance of: Michael Balinga, Thomas Nzabi, Nkeng Philip, Johan van Valkenberg, Ludovic Ngok Banak, Maurice Betafor, Zacheus Nitua Ngoe June 2004 INSTITUTIONAL AFFILIATIONS Ludovic Ngok Banak Philip Nkeng Yves Issembe Betafo Maurice Thomas Nzabi Zacheus Nitua Ngoe Gretchen Walters Michael Balinga Terry Sunderland EXECUTIVE SUMMARY Gabon is one of tropical Africa’s biologically richest countries, supporting several mountain chains where plant diversity is purported to be very high. Of all of the CARPE landscapes, the Monte-Alen-Monts de Cristal landscape of Equatorial Guinea and Gabon probably possess the greatest botanical wealth. Though severely underdocumented to the point of not knowing how many plant species are in the Monts or in Gabon proper, many have cited the Monts as a Pleistocene Refugium as evidenced by it being a center of regional plant diversity for several taxa and rich in endemic species. Rainfall is approximately 3,000mm per annum, and the substrate part of the ancient Precambrian basement rising to just over 900m. Logging, gold mining, and hunting are considered to be the main threats in the Monts de Cristal, but the recent creation of two national parks (Mt. Seni and Mbé National Parks) in the area potentially lessens these threats once a management structure is in place. A multi-national botanical team of four institutions came together from Limbe Botanic Garden, l’Herbier National du Gabon, Smithsonian Institution, and the Missouri Botanical Garden and installed permanent Biodiversity Plots (BDP’s) at two sites in the Mbé National Park. -
Sierra Leone’S Biodiversity Strategy and Action Plan
Sierra Leone’s Biodiversity Strategy and Action Plan REPUBLIC OF SIERRA LEONE Sierra Leone’s Second National Biodiversity Strategy and Action Plan 2017-2026 Environment Protection Agency Sierra Leone Office of the President The Government of Sierra Leone November 2017 NBSAP 2017 -2026 i Sierra Leone’s Biodiversity Strategy and Action Plan GOVERNMENT OF SIERRA LEONE Environment Protection Agency Sierra Leone, Office of the President Freetown, Sierra Leone Tel: 232-76-677235 Website:www.epa.gov.sl November, 2017 NBSAP 2017-2026 i Sierra Leone’s Biodiversity Strategy and Action Plan REVISED NBSAP (2017-2026) DELIVERY TEAM Project Supervisor Madam Haddijatou Jallow, Executive Chairperson, EPA-SL Project Coordinator Mr Momodu A. Bah, Director, EPA-SL & CBD National Focal Point Project Manager (PM) Dr. Ralph Bona – Consultant Environmentalist Document Compilers Dr. Arnold Okoni-Williams – Consultant Ecologist Dr. Ralph Bona (PM) Document Reviewers Prof A.B. Karim – Consultant (FBC, USL) Mr. Edward Aruna – Consultant (RAP-SL) NBSAP 2017-2026 ii Sierra Leone’s Biodiversity Strategy and Action Plan FOREWORD I have the honour to present the revised National Biodiversity Strategy and Action Plan (NBSAP 2017-2026) for Sierra Leone, which has been developed based on national needs and priorities for the implementation of the Convention on Biological Diversity (CBD) objectives and Aichi Targets. Sierra Leoneans are becoming increasingly aware of the inextricable relationship between our survival and way of life on the one hand, and biodiversity and the environment on the other. Now than ever before, we are aware that our prosperity and economic development, welfare, spirituality, tradition and culture, health and food security can only thrive in a healthy, biodiversity-rich environment. -
Species of Madagascar, I. E. Zorithoxylum Mado- Gascoriense
ZANTHOXYLUM 601 stem bark: skimmianine, Y-fagarine, dictam- Iana. Zoritho, cy!urn thouuenotiiis also used in nine, N-benzoyltyramine-methylether and 4- traditional medicine as an antitussive, but it is methoxy-I-methyl-2-quinolinone. The quino- unclear which part of the plant line alkaloid Y-fagarine exhibited the strongest Ecology Zanthoxylum tsihonimposo occurs in-vitro antiplasmodial activity. Decarine, an in dry deciduous forest, up to 400 in altitude. alkaloid isolated from two other Zorithoxylum Genetic resources and breeding Although species of Madagascar, i. e. Zorithoxylum mado- much of the natural forest in the area of distri- gascoriense Baker and Zorithoxylum thouueno- bution of Zanthoxylum tsihonimposo has dis- tit H. Perrier, showed molluscicidal activity appeared or is heavily degraded, the species Is against Biomphulorio platfferi, which is an apparently still common locally, at least trees intermediate hostfor bilharzia parasites of sinaUer sizes. There does not seem to be jin- Botany Deciduous medium-sized tree up to mediate danger of genetic erosion, also because 30 in tall; bole usually straight and cylindrical, Zorithoxy!urn tsihonimposo has a fairly wide up to 100 cm in diameter, with woody, prickle- distribution area bearing protuberances up to 2 cm long but old Prospects There is too little information on trees sometimes lacking these, often with large Zorithoxylum tsihonimposo to judge its pros- and thick, yellowish, corky flakes at base; bark pects as a commercial timber tree under sus- thick, outer bark greyish white to pale brown; tainable exploitation management. However, twigs thick, armed with conical prickles stands of large trees are probably too scarce Leaves alternate, clustered at ends of and inaccessible. -
SGS QUALIFOR Number: AD 33-SI-01 (Associated Documents) Version Date: 2016-12-20 Page: 1 of 63 Approved By: Gerrit Marais
SGS QUALIFOR Number: AD 33-SI-01 (Associated Documents) Version Date: 2016-12-20 Page: 1 of 63 Approved by: Gerrit Marais SGS QUALIFOR FOREST MANAGEMENT STANDARD FOR SIERRA LEONE 2016 This checklist presents the SGS Qualifor standard for forest certification against the FSC Principles and Criteria (FSC-STD-01-001-V4, as last amended in 2002). This standard forms the basis for: ▪ Development of a regional standard ▪ Scoping assessment ▪ Certification assessment ▪ Surveillance assessment ▪ Information to stakeholders on the assessment criteria used by SGS Qualifor PHYSICAL ADDRESS International Local SGS QUALIFOR SGS South Africa (Pty) Ltd Building 1, Huawei Office Park Building 1, Huawei Office Park Western Service Road Western Service Road Woodmead, Johannesburg, 2191 Woodmead, Johannesburg, 2191 South Africa South Africa CONTACT Person: Natalia Marius Chantell van Wyk Telephone: +598.2.600.3.600 +27 11 800-1000 +598.95.02.00.86 Email : [email protected] [email protected] Web address: http://www.agriculture- https://www.sgs.co.za food.sgs.com/en/Forestry/ AD 33-SI-01 Page 2 of 63 CHANGES SINCE THE PREVIOUS VERSION OF THE STANDARD Section Change Date AD 33-SI-01 Page 3 of 63 ADAPTATION OF STANDARD TO MEET LOCAL REQUIREMENTS AND THRESHOLDS The objective of local adaptation of the SGS SGS QUALIFOR is not required to seek or Qualifor standard is to: develop a consensus with regard to the i. identify any aspects of the standard that may be modification of our generic standard. SGS in conflict with legal requirements in the area in Qualifor will however make meaningful which the standard is to be used, and if such a accommodation of stakeholder concerns conflict is identified shall evaluate it for the and will be guided in this by: purposes of certification in discussion with the i. -
World Bank Document
Economic Community Communauté Economique Of West African States Public Disclosure Authorized Des Etats de l’Afrique de l’Ouest General Secretariat / Secrétariat Général ENVIRONMENTAL AND SOCIAL IMPACT ASSESSMENT STUDY on the MAN (Côte d‟Ivoire) - SANNEQUILLE (LIBERIA) - NZÉRÉKORE (GUINEA) - Public Disclosure Authorized BUCHANAN (LIBERIA) - MONROVIA (LIBERIA) - BUMBUNA (SIERRA LEONE) - LINSAN (GUINEA) INTERCONNECTION PROJECT Public Disclosure Authorized FINAL ESIA REPORT (LIBERIA SECTION) Public Disclosure Authorized December 2011 Environmental and Social Impact Assessment (ESIA) Study Environmental and Social Environmental & Social Resettlement Action Impact Assessment Management Plan Plan (RAP) Report (ESIA) Report (ESMP) Report Environmental and Social Impact Assessment (ESIA) Report: This report contains the results of the Environmental and Social Impact Assessment (ESIA). The ESIA is a formal process to predict the environmental consequences of human development activities and to plan appropriated measures to eliminate or reduce adverse effects and enhances positive effects. Environmental & Social Management Plan (ESMP) Report: This report contains the measures to be taken during the implementation and operation of a project to eliminate or offset adverse environmental impacts or to reduce them to acceptable levels, and the actions needed to implement these measures. Resettlement Action Plan (RAP) Report: This report contains the resettlement action plan which is based on up-to-date and reliable information about the proposed resettlement and its impacts on the displaced persons and other adversely affected groups, and the legal issues involved in resettlement. 1 Position: Project Coordinator (Civil Engineer) Name of Firm: Korea Electric Power Corporation Name of Consultant: Byeong Soo, Kwon Profession: Environmental Consultant Years of Experience: 8 Years Years with firm: 15 Years 2 Position: Environmentalist Name of Firm: CEDA CONSULT Name of Consultant: Prof. -
The Significance of Meristic Changes in the Flowers of Sapotaceae
bs_bs_banner Botanical Journal of the Linnean Society, 2016, 180, 161–192. With figures The significance of meristic changes in the flowers of Sapotaceae BRITTA M. C. KÜMPERS1,2, JAMES E. RICHARDSON2,3, ARNE A. ANDERBERG4, PETER WILKIE2 and LOUIS P. RONSE DE CRAENE FLS2* Downloaded from https://academic.oup.com/botlinnean/article/180/2/161/2416504 by guest on 21 September 2020 1Centre for Plant Integrative Biology, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK 2Royal Botanic Garden Edinburgh, Edinburgh EH3 5LR, UK 3Universidad del Rosario, Programa de Biología, Carrera 24 No. 63C-69, Bogotá, DC, Colombia 4Department of Botany, Swedish Museum of Natural History, SE-104 05 Stockholm, Sweden Received 14 May 2015; revised 12 October 2015; accepted for publication 6 November 2015 Sapotaceae belongs to the heterogeneous order Ericales and exhibits extensive diversity in floral morphology. Although pentamery is widespread and probably the ancestral condition, some clades are extremely variable in merism, with fluctuations between tetramery to hexamery and octomery, affecting different floral organs to different degrees. We assessed the different states of merism in Sapotaceae to determine the evolution of this character among different clades. The floral morphology and development of nine species from eight genera were investigated using scanning electron microscopy (SEM). Furthermore, floral characters related to merism were mapped onto a phylogenetic tree to analyse the distribution and evolutionary significance of merism in the family. Developmental evidence shows that changes in merism are linked to a concerted multiplication of organs among whorls and an increase in whorls through the displacement of organs. Although pentamery is reconstructed as the ancestral condition, a reduction to tetramery or an increase to a higher merism (mainly hexamery or octomery) has evolved at least five times in the family.