available online at www.studiesinmycology.org StudieS in Mycology 64: 145–153. 2009. doi:10.3114/sim.2009.64.08 The molecular phylogeny of freshwater Dothideomycetes C.A. Shearer1*, H.A. Raja1, A.N. Miller2, P. Nelson3, K. Tanaka4, K. Hirayama4, L. Marvanová5, K.D. Hyde6 and Y. Zhang7 1Department of Plant Biology, University of Illinois, 505 S. Goodwin Ave., Urbana, IL 61801, U.S.A.; 2Illinois Natural History Survey, University of Illinois, 1816 South Oak St., Champaign, IL, 61820, U.S.A.; 3University of Minnesota, Ecology, Evolution, and Behavior, 100 Ecology Building, St. Paul, MN 55108, U.S.A.; 4Faculty of Agriculture and Life Science, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan; 5Czech Collection of Mircroorganisms, Institute of Experimental Biology, Faculty of Science, Masaryk University, Tvrdého 14, Brno CZ-602 00, Czech Republic; 6School of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand; 7Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China *Correspondence: C.A. Shearer,
[email protected] Abstract: The freshwater Dothideomycetes species are an ecological rather than taxonomic group and comprise approximately 178 meiosporic and mitosporic species. Due to convergent or parallel morphological adaptations to aquatic habitats, it is difficult to determine phylogenetic relationships among freshwater taxa and among freshwater, marine and terrestrial taxa based solely on morphology. We conducted molecular sequence-based phylogenetic analyses using nuclear ribosomal sequences (SSU and/or LSU) for 84 isolates of described and undescribed freshwater Dothideomycetes and 85 additional taxa representative of the major orders and families of Dothideomycetes.