WTU Herbarium Specimen Label Data
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Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
Desmodium Cuspidatum (Muhl.) Loudon Large-Bracted Tick-Trefoil
New England Plant Conservation Program Desmodium cuspidatum (Muhl.) Loudon Large-bracted Tick-trefoil Conservation and Research Plan for New England Prepared by: Lynn C. Harper Habitat Protection Specialist Massachusetts Natural Heritage and Endangered Species Program Westborough, Massachusetts For: New England Wild Flower Society 180 Hemenway Road Framingham, MA 01701 508/877-7630 e-mail: [email protected] • website: www.newfs.org Approved, Regional Advisory Council, 2002 SUMMARY Desmodium cuspidatum (Muhl.) Loudon (Fabaceae) is a tall, herbaceous, perennial legume that is regionally rare in New England. Found most often in dry, open, rocky woods over circumneutral to calcareous bedrock, it has been documented from 28 historic and eight current sites in the three states (Vermont, New Hampshire, and Massachusetts) where it is tracked by the Natural Heritage programs. The taxon has not been documented from Maine. In Connecticut and Rhode Island, the species is reported but not tracked by the Heritage programs. Two current sites in Connecticut are known from herbarium specimens. No current sites are known from Rhode Island. Although secure throughout most of its range in eastern and midwestern North America, D. cuspidatum is Endangered in Vermont, considered Historic in New Hampshire, and watch-listed in Massachusetts. It is ranked G5 globally. Very little is understood about the basic biology of this species. From work on congeners, it can be inferred that there are likely to be no problems with pollination, seed set, or germination. As for most legumes, rhizobial bacteria form nitrogen-fixing nodules on the roots of D. cuspidatum. It is unclear whether there have been any changes in the numbers or distribution of rhizobia capable of forming effective mutualisms with D. -
Moehringia Lateriflora
Report under the Article 17 of the Habitats Directive European Environment Period 2007-2012 Agency European Topic Centre on Biological Diversity Moehringia lateriflora Annex II, IV Priority No Species group Vascular plants Regions Boreal Moehringia lateriflora is a flowering plant with circumpolar distribution including Russia, China, Japan and North America. Within the European Union it occur only in the Boreal region and is very rare in Estonia and Sweden, more widespread in Finland. It grows mainly on stony shores, grazed dry or moist wooded meadows and forest edges. The species Considered "Favourable" in Estonia and Sweden, but not in Finland. Majority of the population in Sweden, but in a few sites. Overall assessment is "Unfavourable Inadequate", due to the situation in Finland. Trend stable. Main threats are changes in hydraulic conditions and lack of grazing. No changes in overall conservation status between 2001-06 and 2007-12 reports. Page 1 Species: Moehringia lateriflora Report under the Article 17 of the Habitats Directive Assessment of conservation status at the European biogeographical level Conservation status (CS) of parameters Current Trend in % in Previous Reason for Region Future CS CS region CS change Range Population Habitat prospects BOR FV FV U1 U1 U1 = 100 U1 See the endnote for more informationi Assessment of conservation status at the Member State level Page 2 Species: Moehringia lateriflora Report under the Article 17 of the Habitats Directive Assessment of conservation status at the Member State level The map shows both Conservation Status and distribution using a 10 km x 10 km grid. Conservation status is assessed at biogeographical level. -
Species Using RAPD Markers
İ. ERÖZ POYRAZ, E. SÖZEN, E. ATAŞLAR, İ. POYRAZ Turk J Biol 36 (2012) 293-302 © TÜBİTAK doi:10.3906/biy-1012-177 Determination of genetic relationships among Velezia L. (Caryophyllaceae) species using RAPD markers İlham ERÖZ POYRAZ1, Emel SÖZEN2, Ebru ATAŞLAR3, İsmail POYRAZ4 1Department of Pharmaceutical Botany, Faculty of Pharmacy, Anadolu University, 26470 Eskişehir - TURKEY 2Department of Biology, Faculty of Sciences, Anadolu University, 26470 Eskişehir - TURKEY 3Department of Biology, Faculty of Science and Literature, Eskişehir Osmangazi University, 26480 Eskişehir - TURKEY 4Department of Molecular Biology and Genetics, Faculty of Science and Letters, Bilecik University, 11210 Gülümbe, Bilecik - TURKEY Received: 24.12.2010 Abstract: Random amplifi ed polymorphic DNA (RAPD) markers were used to determine genetic relationships among Velezia L. species from Turkey. A total of 432 amplifi ed bands were obtained using 14 RAPD primers. Th e polymorphism in RAPD markers was high (98.61%) and was suffi cient to distinguish each species. Th e degree of band-sharing was used for evaluating the genetic similarity between species and for constructing a dendrogram by the unweighted pair group method with arithmetic mean (UPGMA). Genetic relationships among the species were found to be fully consistent with those obtained by the use of morphological characters. Data obtained from our study demonstrated that the RAPD technique could be successfully used for the determination of genetic relationships among Velezia species and for species identifi cation. Furthermore, it can be effi ciently employed in future studies to provide preliminary data for conservation of endangered Velezia species. Key words: Genetic relationships, RAPD-PCR, Velezia L., Turkey RAPD markörleri kullanılarak Velezia L. -
Flora-Lab-Manual.Pdf
LabLab MManualanual ttoo tthehe Jane Mygatt Juliana Medeiros Flora of New Mexico Lab Manual to the Flora of New Mexico Jane Mygatt Juliana Medeiros University of New Mexico Herbarium Museum of Southwestern Biology MSC03 2020 1 University of New Mexico Albuquerque, NM, USA 87131-0001 October 2009 Contents page Introduction VI Acknowledgments VI Seed Plant Phylogeny 1 Timeline for the Evolution of Seed Plants 2 Non-fl owering Seed Plants 3 Order Gnetales Ephedraceae 4 Order (ungrouped) The Conifers Cupressaceae 5 Pinaceae 8 Field Trips 13 Sandia Crest 14 Las Huertas Canyon 20 Sevilleta 24 West Mesa 30 Rio Grande Bosque 34 Flowering Seed Plants- The Monocots 40 Order Alistmatales Lemnaceae 41 Order Asparagales Iridaceae 42 Orchidaceae 43 Order Commelinales Commelinaceae 45 Order Liliales Liliaceae 46 Order Poales Cyperaceae 47 Juncaceae 49 Poaceae 50 Typhaceae 53 Flowering Seed Plants- The Eudicots 54 Order (ungrouped) Nymphaeaceae 55 Order Proteales Platanaceae 56 Order Ranunculales Berberidaceae 57 Papaveraceae 58 Ranunculaceae 59 III page Core Eudicots 61 Saxifragales Crassulaceae 62 Saxifragaceae 63 Rosids Order Zygophyllales Zygophyllaceae 64 Rosid I Order Cucurbitales Cucurbitaceae 65 Order Fabales Fabaceae 66 Order Fagales Betulaceae 69 Fagaceae 70 Juglandaceae 71 Order Malpighiales Euphorbiaceae 72 Linaceae 73 Salicaceae 74 Violaceae 75 Order Rosales Elaeagnaceae 76 Rosaceae 77 Ulmaceae 81 Rosid II Order Brassicales Brassicaceae 82 Capparaceae 84 Order Geraniales Geraniaceae 85 Order Malvales Malvaceae 86 Order Myrtales Onagraceae -
Rethinking Phylogenetics Using Caryophyllales (Angiosperms), Matk Gene and Trnk Intron As Experimental Platform
Rethinking phylogenetics using Caryophyllales (angiosperms), matK gene and trnK intron as experimental platform Sunny Sheliese Crawley Dissertation submitted to the faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy In Biological Sciences Khidir W. Hilu Eric P. Beers Carla V. Finkielstein Jill C. Sible December 2, 2011 Blacksburg, Virginia Keywords: (phylogeny, missing data, caryophyllids, trnK intron, matK, RNA editing, gnetophytes) Copyright 2011, Sunny Sheliese Crawley Rethinking phylogenetics using Caryophyllales (angiosperms), matK gene and trnK intron as experimental platform Sunny Sheliese Crawley ABSTRACT The recent call to reconstruct a detailed picture of the tree of life for all organisms has forever changed the field of molecular phylogenetics. Sequencing technology has improved to the point that scientists can now routinely sequence complete plastid/mitochondrial genomes and thus, vast amounts of data can be used to reconstruct phylogenies. These data are accumulating in DNA sequence repositories, such as GenBank, where everyone can benefit from the vast growth of information. The trend of generating genomic-region rich datasets has far outpaced the expasion of datasets by sampling a broader array of taxa. We show here that expanding a dataset both by increasing genomic regions and species sampled using GenBank data, despite the inherent missing DNA that comes with GenBank data, can provide a robust phylogeny for the plant order Caryophyllales (angiosperms). We also investigate the utility of trnK intron in phylogeny reconstruction at relativley deep evolutionary history (the caryophyllid order) by comparing it with rapidly evolving matK. We show that trnK intron is comparable to matK in terms of the proportion of variable sites, parsimony informative sites, the distribution of those sites among rate classes, and phylogenetic informativness across the history of the order. -
Differential Seed Germination Responses to the Ratio of Red to Far-Red Light in Temperate and Tropical Species
Plant Ecol DOI 10.1007/s11258-013-0205-y Differential seed germination responses to the ratio of red to far-red light in temperate and tropical species Pimonrat Tiansawat • James W. Dalling Received: 9 January 2013 / Accepted: 22 April 2013 Ó Springer Science+Business Media Dordrecht 2013 Abstract Variation in vegetation density creates a that the threshold R:FR that stimulates 50 % of range of red to far-red ratios of irradiance (R:FR) maximum germination (R:FR50) was also related to potentially permitting fine-scale discrimination of seed mass and latitudinal distribution. In agreement light conditions for seed germination. However, with an earlier study, we found that for temperate taxa, remarkably few studies have explored whether R:FR the R:FR50 was significantly negatively correlated responses of germination vary among species that with seed mass. In contrast, for 22 tropical taxa, we differ in distribution and life-history traits. In this found a significant positive correlation. These oppos- study, we explored the relationships between R:FR ing relationships suggest contrasting selection pres- requirements and four species characteristics: seed sures on germination responses of tropical taxa mass, latitudinal distribution (tropical vs. temperate), (mostly trees) and temperate herbaceous plants, and seed dormancy (dormant vs. nondormant), and plant which are likely related to differences in seed longev- growth form (woody vs. nonwoody). We obtained data ity, seed burial rates, and reproductive output. on germination response to R:FR of 62 species from published literature and added new data for ten species Keywords Regeneration niche Á Light dependence Á from aseasonal tropical forests in Borneo. -
Disparity, Diversity, and Duplications in the Caryophyllales
Research Disparity, diversity, and duplications in the Caryophyllales Stephen A. Smith1, Joseph W. Brown1, Ya Yang2, Riva Bruenn3, Chloe P. Drummond3, Samuel F. Brockington4, Joseph F. Walker1, Noah Last2, Norman A. Douglas3 and Michael J. Moore3 1Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48103, USA; 2Department of Plant Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St Paul, MN 55108, USA; 3Department of Biology, Oberlin College, 119 Woodland St, Oberlin, OH 44074-1097, USA; 4Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK Summary Author for correspondence: The role played by whole genome duplication (WGD) in plant evolution is actively debated. Stephen A. Smith WGDs have been associated with advantages such as superior colonization, various adapta- Tel: +1 734 615 5510 tions, and increased effective population size. However, the lack of a comprehensive mapping Email: [email protected] of WGDs within a major plant clade has led to uncertainty regarding the potential association Received: 30 May 2017 of WGDs and higher diversification rates. Accepted: 28 July 2017 Using seven chloroplast and nuclear ribosomal genes, we constructed a phylogeny of 5036 species of Caryophyllales, representing nearly half of the extant species. We phylogenetically New Phytologist (2017) mapped putative WGDs as identified from analyses on transcriptomic and genomic data and doi: 10.1111/nph.14772 analyzed these in conjunction with shifts in climatic occupancy and lineage diversification rate. Thirteen putative WGDs and 27 diversification shifts could be mapped onto the phylogeny. Key words: Caryophyllales, climatic occupancy, diversification rates, duplications, Of these, four WGDs were concurrent with diversification shifts, with other diversification phylogenomics. -
Research on Spontaneous and Subspontaneous Flora of Botanical Garden "Vasile Fati" Jibou
Volume 19(2), 176- 189, 2015 JOURNAL of Horticulture, Forestry and Biotechnology www.journal-hfb.usab-tm.ro Research on spontaneous and subspontaneous flora of Botanical Garden "Vasile Fati" Jibou Szatmari P-M*.1,, Căprar M. 1 1) Biological Research Center, Botanical Garden “Vasile Fati” Jibou, Wesselényi Miklós Street, No. 16, 455200 Jibou, Romania; *Corresponding author. Email: [email protected] Abstract The research presented in this paper had the purpose of Key words inventory and knowledge of spontaneous and subspontaneous plant species of Botanical Garden "Vasile Fati" Jibou, Salaj, Romania. Following systematic Jibou Botanical Garden, investigations undertaken in the botanical garden a large number of spontaneous flora, spontaneous taxons were found from the Romanian flora (650 species of adventive and vascular plants and 20 species of moss). Also were inventoried 38 species of subspontaneous plants, adventive plants, permanently established in Romania and 176 vascular plant floristic analysis, Romania species that have migrated from culture and multiply by themselves throughout the garden. In the garden greenhouses were found 183 subspontaneous species and weeds, both from the Romanian flora as well as tropical plants introduced by accident. Thus the total number of wild species rises to 1055, a large number compared to the occupied area. Some rare spontaneous plants and endemic to the Romanian flora (Galium abaujense, Cephalaria radiata, Crocus banaticus) were found. Cultivated species that once migrated from culture, accommodated to environmental conditions and conquered new territories; standing out is the Cyrtomium falcatum fern, once escaped from the greenhouses it continues to develop on their outer walls. Jibou Botanical Garden is the second largest exotic species can adapt and breed further without any botanical garden in Romania, after "Anastasie Fătu" care [11]. -
Checklist of the Vascular Plants of San Diego County 5Th Edition
cHeckliSt of tHe vaScUlaR PlaNtS of SaN DieGo coUNty 5th edition Pinus torreyana subsp. torreyana Downingia concolor var. brevior Thermopsis californica var. semota Pogogyne abramsii Hulsea californica Cylindropuntia fosbergii Dudleya brevifolia Chorizanthe orcuttiana Astragalus deanei by Jon P. Rebman and Michael G. Simpson San Diego Natural History Museum and San Diego State University examples of checklist taxa: SPecieS SPecieS iNfRaSPecieS iNfRaSPecieS NaMe aUtHoR RaNk & NaMe aUtHoR Eriodictyon trichocalyx A. Heller var. lanatum (Brand) Jepson {SD 135251} [E. t. subsp. l. (Brand) Munz] Hairy yerba Santa SyNoNyM SyMBol foR NoN-NATIVE, NATURaliZeD PlaNt *Erodium cicutarium (L.) Aiton {SD 122398} red-Stem Filaree/StorkSbill HeRBaRiUM SPeciMeN coMMoN DocUMeNTATION NaMe SyMBol foR PlaNt Not liSteD iN THE JEPSON MANUAL †Rhus aromatica Aiton var. simplicifolia (Greene) Conquist {SD 118139} Single-leaF SkunkbruSH SyMBol foR StRict eNDeMic TO SaN DieGo coUNty §§Dudleya brevifolia (Moran) Moran {SD 130030} SHort-leaF dudleya [D. blochmaniae (Eastw.) Moran subsp. brevifolia Moran] 1B.1 S1.1 G2t1 ce SyMBol foR NeaR eNDeMic TO SaN DieGo coUNty §Nolina interrata Gentry {SD 79876} deHeSa nolina 1B.1 S2 G2 ce eNviRoNMeNTAL liStiNG SyMBol foR MiSiDeNtifieD PlaNt, Not occURRiNG iN coUNty (Note: this symbol used in appendix 1 only.) ?Cirsium brevistylum Cronq. indian tHiStle i checklist of the vascular plants of san Diego county 5th edition by Jon p. rebman and Michael g. simpson san Diego natural history Museum and san Diego state university publication of: san Diego natural history Museum san Diego, california ii Copyright © 2014 by Jon P. Rebman and Michael G. Simpson Fifth edition 2014. isBn 0-918969-08-5 Copyright © 2006 by Jon P. -
A New Taxon in the Genus <Emphasis Type="Italic">Moehringia
Plant P1. Syst. Evol. 177:27-38 (1991) Systematics and Evolution © Springer-Verlag 1991 Printed in Austria A new taxon in the genus Moehringia (Caryophyllaceae) C. DIAZ DE LA GUARDIA, J. F. MOTA, and F. VALLE Received November 11, 1990; in revised Version March 25, 1991 Key words: Angiosperms, Caryophyllaceae, Moehringia intricata. - Taxonomy, morphol- ogy. - Flora of S. Spain. Abstract: The new taxon Moehringia intricata subsp, giennensis, from the calcareous moun- tains of the south-eastern Iberian Peninsula is described. A comparative morphological study with regard to the most closely related taxa, contributes information of leaf anatomy, seed and pollen morphology, ecology and distribution. In our study of the flora and vegetation of the higher calcareous mountains of Andalusia, we observed significant differences, both morphological and ecological, between the specimens of Moehringia intricata WILLK. obtained from the Sierra de Maria (Almeria) and those from nearby mountain ranges, such as Sierra de Cazorla, Segura and Mfigina (Ja6n). For the present paper we carried out a detailed morphological study of M. intricata and of the most closely related taxa. After identifying the species type, and observing that only the populations of the Sierra de Maria (Almeria), the classical location, correspond to the morphological characteristics of the protologue, we propose a new taxon with the status of subspecies for the populations of the other calcareous mountains of the south-eastern Iberian Peninsula. This new taxon is related to other subspecies of M. intricata such as subsp. tejedensis (WILLK.) J. M. MONTSERRAT and subsp, castellana J. M. MONTSERRAT. The taxonomic characteristics considered in relating to and distinguishing from those subspecies were habit, morphology and leaf anatomy, inflorescence, seed morphology, etc. -
Disparity, Diversity, and Duplications in the Caryophyllales
Article type : MS - Regular Manuscript Disparity, diversity, and duplications in the Caryophyllales Stephen A. Smith1, Joseph W. Brown1, Ya Yang2, Riva Bruenn3, Chloe P. Drummond3, Samuel 4 1 2 3 3 F. Brockington , Joseph F. Walker , Noah Last , Norman A. Douglas and Michael J. Moore 1Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48103, USA; 2Department of Plant Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St Paul, MN 55108, USA; 3Department of Biology, Oberlin College, 119 Woodland St, Oberlin, OH 44074-1097, USA; 4Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK Author for correspondence: Stephen A. Smith Tel: +1 734 615 5510 Email: [email protected] Received: 30 May 2017 Accepted: 28 July 2017 Summary • The role whole genome duplication (WGD) plays in plant evolution is actively debated. WGDs have been associated with advantages including superior colonization, various Author Manuscript adaptations, and increased effective population size. However, the lack of a comprehensive mapping of WGDs within a major plant clade has led to uncertainty regarding the potential association of WGDs and higher diversification rates. This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1111/nph.14772 This article is protected by copyright. All rights reserved • Using seven chloroplast and nuclear ribosomal genes, we constructed a phylogeny of 5036 species of Caryophyllales, representing nearly half of the extant species.