The Journal of the Catfish Study Group
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
The Utilization of Bioresources by Local Communities at Giam Siak Kecil-Bukit Batu Biosphere Reserve, Riau Province, Indonesia
BIODIVERSITAS ISSN: 1412-033X Volume 17, Number 2, October 2016 E-ISSN: 2085-4722 Pages: 873-886 DOI: 10.13057/biodiv/d170265 The utilization of bioresources by local communities at Giam Siak Kecil-Bukit Batu Biosphere Reserve, Riau Province, Indonesia PRIMA WAHYU TITISARI1,2,♥, TATI SURYATI SYAMSUDIN2, ACHMAD SJARMIDI2 1,2 Department of Biologi, Faculty of Teacher Trainning and Education, Universitas Islam Riau. Jl. Kaharuddin Nasution No. 113, Marpoyan, Pekanbaru 28284, Riau, Indonesia. Tel.: +62-762-674674, ♥email: [email protected] 2School of Life Sciences and Technology, Institut Teknologi Bandung. Jl. Ganesha No. 10, Bandung 40132, West Jawa, Indonesia Manuscript received: 20 April 2016. Revision accepted: 21 October 2016. Abstract. Titisari PW, Syamsudin TS, Sjarmidi A. 2016. The utilization of bioresources by local communities at Giam Siak Kecil-Bukit Batu Biosphere Reserve, Riau Province, Indonesia. Biodiversitas 17: 873-886. This study aims to assess the use of bioresources of Giam Siak Kecil Bukit Batu Biosphere Reserve by the local community. The use of bioresources was characterized by the level of utilization of bioresources in the household economy. It classified into five groups; (i) subsistence group (SG), (ii) supplementary group (SpG), (iii) integrated group (IG), (iv) specialized extraction group (SEG), and (v) specialized cultivation group (SCG). The results showed that the local community used bioresources as main source of livelihood at the core zone and buffer zone. There are 36 species of fish, 17 species of non-timber, and 28 species of timber used by local community. Core area and buffer zone are dominated by SEG and SCG. In the core area, the relationship between SEG non-timber and timber is very significant. -
Evolutionary and Population Genetics of Siluroidei
Aquat. Living Resour., 1996, Vol. 9, Hors série, 81-92 Vlaams Instituut voor de Zee Flanders M arin s Institute Evolutionary and population genetics of Siluroidei Filip A. Volckaert (1) and Jean-François Agnèse (2) (1) Katholieke Universität Leuven, Laboratory of Ecology and Aquaculture, Zoological Institute, Naamsestraat 59, B-3000 Leuven, Belgium. 2 4 2 2 4 <2) ^‘eUtre ^ £c^ierc^ies Océanographiques, BP V I8, Abidjan, Ivory Coast. Accepted July 19, 1995. Volckaert F. A., J.-F. Agnèse. In: The biology and culture of catfishes. M. Legendre, J.-P. Proteau eds. Aquat. Living Resour., 1996, Vol. 9, H ors série, 81-92. A bstract The genetic characterization of catfishes by means of phenotypic markers, karyotyping, protein and DNA polymorphisms contributes to or forms an integral part of the disciplines of systematics, population genetics, quantitative genetics, biochemistry, molecular biology and aquaculture. Judged from the literature, the general approach to research is pragmatic; the Siluroidei do not include model species for fundamental genetic research. The Clariidae and the Ictaluridae represent the best studied families. The’ systematic status of a number of species and families has been either elucidated or confirmed by genetic approaches. Duplication of ancestral genes occurred in catfishes just as in other vertebrates. The genetic structure of and gene flow among natural populations have been documented in relatively few cases, while the evaluation of strains for aquaculture (especially Ictaluridae and Clariidae) is in progress. The mapping of genetic markers has started in Ictalurus. It appears that a more detailed knowledge of catfish populations is required from two perspectives. First, natural populations which are threatened by habitat loss and interfluvial or intercontinental transfers are poorly characterized at the genetic level. -
Family-Bagridae-Overview-PDF.Pdf
FAMILY Bagridae Bleeker, 1858 - naked catfishes, bagrid catfishes [=Bagri, Bagrichthyoidei, Ritae, Bagrichthyes, Porcinae, Mystidae, Mystini, Bagroidinae, Pelteobagrini, Batasinae] GENUS Bagrichthys Bleeker, 1857 - bagrid catfishes [=Pseudobagrichthys] Species Bagrichthys hypselopterus (Bleeker, 1852) - blacklancer catfish Species Bagrichthys macracanthus (Bleeker, 1854) - Lamatang blacklancer catfish Species Bagrichthys macropterus (Bleeker, 1854) - false blacklancer Species Bagrichthys majusculus Ng, 2002 - Mun blacklancer Species Bagrichthys micranodus Roberts, 1989 - Kapuas blacklancer Species Bagrichthys obscurus Ng, 1999 - obscure blacklancer Species Bagrichthys vaillantii (Popta, 1906) - Vaillant's blacklancer [=macropterus] GENUS Bagroides Bleeker, 1851 - bagrid catfishes Species Bagroides melapterus Bleeker, 1851 - Bornean bagroides [=melanopterus] GENUS Bagrus Bosc, 1816 - bagrid catfishes Species Bagrus bajad (Forsskal, 1775) - bayad [=macropterus] Species Bagrus caeruleus Roberts & Stewart, 1976 - Lower Congo bagrus Species Bagrus degeni Boulenger, 1906 - Victoria bagrus Species Bagrus docmak (Forsskal, 1775) - semutundu [=koenigi, niger] Species Bagrus filamentosus Pellegrin, 1924 - Niger bagrus Species Bagrus lubosicus Lonnberg, 1924 - Lubosi bagrus Species Bagrus meridionalis Gunther, 1894 - kampango, kampoyo Species Bagrus orientalis Boulenger, 1902 - Pangani bagrus Species Bagrus tucumanus Burmeister, 1861- Tucuman bagrus Species Bagrus ubangensis Boulenger, 1902 - Ubangi bagrus Species Bagrus urostigma Vinciguerra, 1895 -
Ekspedisi Saintifik Biodiversiti Hutan Paya Gambut Selangor Utara 28 November 2013 Hotel Quality, Shah Alam SELANGOR D
Prosiding Ekspedisi Saintifik Biodiversiti Hutan Paya Gambut Selangor Utara 28 November 2013 Hotel Quality, Shah Alam SELANGOR D. E. Seminar Ekspedisi Saintifik Biodiversiti Hutan Paya Gambut Selangor Utara 2013 Dianjurkan oleh Jabatan Perhutanan Semenanjung Malaysia Jabatan Perhutanan Negeri Selangor Malaysian Nature Society Ditaja oleh ASEAN Peatland Forest Programme (APFP) Dengan Kerjasama Kementerian Sumber Asli and Alam Sekitar (NRE) Jabatan Perlindungan Hidupan Liar dan Taman Negara (PERHILITAN) Semenanjung Malaysia PROSIDING 1 SEMINAR EKSPEDISI SAINTIFIK BIODIVERSITI HUTAN PAYA GAMBUT SELANGOR UTARA 2013 ISI KANDUNGAN PENGENALAN North Selangor Peat Swamp Forest .................................................................................................. 2 North Selangor Peat Swamp Forest Scientific Biodiversity Expedition 2013...................................... 3 ATURCARA SEMINAR ........................................................................................................................... 5 KERTAS PERBENTANGAN The Socio-Economic Survey on Importance of Peat Swamp Forest Ecosystem to Local Communities Adjacent to Raja Musa Forest Reserve ........................................................................................ 9 Assessment of North Selangor Peat Swamp Forest for Forest Tourism ........................................... 34 Developing a Preliminary Checklist of Birds at NSPSF ..................................................................... 41 The Southern Pied Hornbill of Sungai Panjang, Sabak -
BIO 313 ANIMAL ECOLOGY Corrected
NATIONAL OPEN UNIVERSITY OF NIGERIA SCHOOL OF SCIENCE AND TECHNOLOGY COURSE CODE: BIO 314 COURSE TITLE: ANIMAL ECOLOGY 1 BIO 314: ANIMAL ECOLOGY Team Writers: Dr O.A. Olajuyigbe Department of Biology Adeyemi Colledge of Education, P.M.B. 520, Ondo, Ondo State Nigeria. Miss F.C. Olakolu Nigerian Institute for Oceanography and Marine Research, No 3 Wilmot Point Road, Bar-beach Bus-stop, Victoria Island, Lagos, Nigeria. Mrs H.O. Omogoriola Nigerian Institute for Oceanography and Marine Research, No 3 Wilmot Point Road, Bar-beach Bus-stop, Victoria Island, Lagos, Nigeria. EDITOR: Mrs Ajetomobi School of Agricultural Sciences Lagos State Polytechnic Ikorodu, Lagos 2 BIO 313 COURSE GUIDE Introduction Animal Ecology (313) is a first semester course. It is a two credit unit elective course which all students offering Bachelor of Science (BSc) in Biology can take. Animal ecology is an important area of study for scientists. It is the study of animals and how they related to each other as well as their environment. It can also be defined as the scientific study of interactions that determine the distribution and abundance of organisms. Since this is a course in animal ecology, we will focus on animals, which we will define fairly generally as organisms that can move around during some stages of their life and that must feed on other organisms or their products. There are various forms of animal ecology. This includes: • Behavioral ecology, the study of the behavior of the animals with relation to their environment and others • Population ecology, the study of the effects on the population of these animals • Marine ecology is the scientific study of marine-life habitat, populations, and interactions among organisms and the surrounding environment including their abiotic (non-living physical and chemical factors that affect the ability of organisms to survive and reproduce) and biotic factors (living things or the materials that directly or indirectly affect an organism in its environment). -
Cambodian Journal of Natural History
Cambodian Journal of Natural History Artisanal Fisheries Tiger Beetles & Herpetofauna Coral Reefs & Seagrass Meadows June 2019 Vol. 2019 No. 1 Cambodian Journal of Natural History Editors Email: [email protected], [email protected] • Dr Neil M. Furey, Chief Editor, Fauna & Flora International, Cambodia. • Dr Jenny C. Daltry, Senior Conservation Biologist, Fauna & Flora International, UK. • Dr Nicholas J. Souter, Mekong Case Study Manager, Conservation International, Cambodia. • Dr Ith Saveng, Project Manager, University Capacity Building Project, Fauna & Flora International, Cambodia. International Editorial Board • Dr Alison Behie, Australia National University, • Dr Keo Omaliss, Forestry Administration, Cambodia. Australia. • Ms Meas Seanghun, Royal University of Phnom Penh, • Dr Stephen J. Browne, Fauna & Flora International, Cambodia. UK. • Dr Ou Chouly, Virginia Polytechnic Institute and State • Dr Chet Chealy, Royal University of Phnom Penh, University, USA. Cambodia. • Dr Nophea Sasaki, Asian Institute of Technology, • Mr Chhin Sophea, Ministry of Environment, Cambodia. Thailand. • Dr Martin Fisher, Editor of Oryx – The International • Dr Sok Serey, Royal University of Phnom Penh, Journal of Conservation, UK. Cambodia. • Dr Thomas N.E. Gray, Wildlife Alliance, Cambodia. • Dr Bryan L. Stuart, North Carolina Museum of Natural Sciences, USA. • Mr Khou Eang Hourt, National Authority for Preah Vihear, Cambodia. • Dr Sor Ratha, Ghent University, Belgium. Cover image: Chinese water dragon Physignathus cocincinus (© Jeremy Holden). The occurrence of this species and other herpetofauna in Phnom Kulen National Park is described in this issue by Geissler et al. (pages 40–63). News 1 News Save Cambodia’s Wildlife launches new project to New Master of Science in protect forest and biodiversity Sustainable Agriculture in Cambodia Agriculture forms the backbone of the Cambodian Between January 2019 and December 2022, Save Cambo- economy and is a priority sector in government policy. -
Freshwater Fishes of Southeast Asia: Potential for the Aquarium
Aquarium Sciences and Conservation, 1, 79±90 (1997) Freshwater ®shes of Southeast Asia: potential for the aquarium ®sh trade and conservation issues Peter K.L. Ngà and H.H. Tan School of Biological Sciences, National University of Singapore, Singapore 119260, Republic of Singapore Southeast Asia is an area rich in biodiversity, with a high degree of endemism in both ¯ora and fauna. Many freshwater ®sh species have been exploited for the ornamental ®sh trade. As the population in South East Asia increases, vast tracts of forests are cleared for agricultural, industrial and urbanization purposes. To conserve and sustainably exploit the wild ®sh population, measures should be adopted to protect this natural resource. Already, several ornamental species have been severely overexploited, e.g. bala shark (Balantiocheilos melanopterus), pygmy loach (Botia sidthimunki) and arowana (Scleropages formosus), but the extirpation of local populations occurs for many reasons, including deforestation, and not just because of ®shing for the trade. There are also still many species that have great ornamental ®sh potential. Wild ®sh species have also been successfully bred in captivity and conserved, e.g. tiger barb (Puntius tetrazona), bala shark, pygmy loach and arowana. Other methods of conservation include public education, leaving pristine forests intact and reforestation. The aquarium trade of the bala shark, harlequin rasbora (Rasbora heteromorpha), clown loach (Botia macracanthus), arowana and saw®sh (Pristis microdon) is discussed. KEYWORDS: Freshwater ®shes, Southeast Asia, aquarium ®sh, conservation, biodiversity INTRODUCTION Southeast Asia is a conglomerate of continental landmasses and numerous islands, all of which lie within the equatorial belt. The region composed of the countries of Thailand, Malaysia, Indonesia, Singapore, Brunei and the Philippines enjoys year- round warmth, high humidity and light, which has resulted in an environment that is extremely diverse and varied in habitats (Whitmore, 1986). -
Food and Feeding Habit of the Critically Endangered Catfish Rita Rita (Hamilton) from the Padda River in the North-Western Region of Bangladesh
International Journal of Advancements in Research & Technology, Volume 2, Issue 1, January-2013 ISSN 2278-7763 Food and feeding habit of the critically endangered catfish Rita rita (Hamilton) from the Padda river in the north-western region of Bangladesh Syeda Mushahida-Al-Noor1*, Md. Abdus Samad1 and N.I.M. Abdus Salam Bhuiyan2 1Department of Fisheries, Faculty of Agriculture, University of Rajshahi, Rajshahi 6205, Bangladesh. 2Department of Zoology, Faculty of Life and Earth, University of Rajshahi, Rajshahi 6205, Bangladesh. *E-mail: [email protected] ABSTRACT Food and feeding habits of Rita rita collected from the Padda river in the north-western region of Bangladesh were investigated by examining the gastro-intestine contents of 744 specimens collected from May, 2010 to April, 2011. Their diet consisted of a broad spectrum of food types but crustaceans were dominant, with copepodes constituting 20.73%, other non-copepode crustaceans constituted 12.01%. The next major food group was insect (15.97%), followed by mollusks (14.76%), teleosts (12.98%) and fish eggs (8.608%). Food items like Teleosts, mollusks, insects and shrimps tended to occur in the stomachs in higher frequencies with an increase in R. rita size (up to 30.5 - 40.5cm), while fish eggs, copepods and non-copepode crustaceans tended to increase in stomachs at sizes between 10.5-20.5cm. Analysis of monthly variations in stomach fullness indicated that feeding intensity fluctuated throughout the year with a low during June and August corresponding to the spawning period. Keywords: Rithe, food items, feeding frequency, Ganges, Rajshahi. 1 INTRODUCTION mollusks, fishes and rotifers in adult stage (Bhuiyan, 1964 and Rita rita (Hamilton) is a freshwater fish and commonly known Rahman, 2005) but takes insects and aquatic plants in earlier as catfish. -
Fish Composition in Dong Nai Biosphere Reserve in Vietnam
30 Nong Lam University, Ho Chi Minh City Fish composition in Dong Nai biosphere reserve in Vietnam Tam T. Nguyen∗, Loi N. Nguyen, Bao Q. Lam, Tru C. Huynh, Dang H. Nguyen, Nam B. Nguyen, Tien D. Mai, & Thuong P. Nguyen Faculty of Fisheries, Nong Lam University, Ho Chi Minh City, Vietnam ARTICLE INFO ABSTRACT Research Paper Dong Nai biosphere reserve (DNBR) is well known for its high level of biodiversity and of global meaningful ecosystem. The fauna includes Received: September 03, 2019 84 species of mammals belonging to 28 families, 10 orders; 407 bird Revised: October 07, 2019 species; 141 reptile and amphibian species; 175 fish species; 2,017 Accepted: November 21, 2019 insect species. The fish fauna of DNBR maintains many rare and endangered fish species recorded in the Vietnam red book and inter- national union for conservation of nature red list (IUCN's red list) Keywords such as Scleropages formosus and many other rare fish species, such as Morulius chrysophekadion, Chitala ornata, Probarbus jullieni, Cy- clocheilichthys enoplos. This study was aimed to identify fish com- Dong Nai biosphere reserve position distributed in DNBR. After the sampling period (01/2019 Endanger to 08/2019), a total of 114 fish species belonging to 11 orders and Fish biodiversity 28 families were recorded in DNBR. There were 09 species of fish on Species compositions the list of rare and endangered fish species of Ministry of Agriculture and Rural Development of Vietnam, 3 species (Chitala ornata, Cos- mochilus harmandi and Hemibagus filamentus) on the Vietnam red ∗Corresponding author list book; 01 species (Ompok bimaculatus) on the IUCN's red list, 11 exotic species, 78 commercial species and 13 species having potential Nguyen Thanh Tam as aquarium fish. -
Biodiversity Status.Qxp
163 BIODIVERSITY STATUS OF FISHES INHABITING RIVERS OF KERALA (S. INDIA) WITH SPECIAL REFERENCE TO ENDEMISM, THREATS AND CONSERVATION MEASURES Kurup B.M. Radhakrishnan K.V. Manojkumar T.G. School of Industrial Fisheries, Cochin University of Science & Technology, Cochin 682 016, India E-mail: [email protected] ABSTRACT The identification of 175 freshwater fish- es from 41 west flowing and 3 east flowing river systems of Kerala were confirmed. These can be grouped under 106 ornamental and 67 food fish- es. The biodiversity status of these fishes was assessed according to IUCN criteria. The results showed that populations of the majority of fish species showed drastic reduction over the past five decades. Thirty-three fish species were found to be endemic to the rivers of Kerala. The distributions of the species were found to vary within and between the river systems and some of the species exhibited a high degree of habitat specificity. The diversity and abundance of the species generally showed an inverse relationship with altitude. The serious threats faced by the freshwater fishes of Kerala are mostly in the form of human interventions and habitat alter- ations and conservation plans for the protection and preservation of the unique and rare fish bio- diversity of Kerala are also highlighted. 164 Biodiversity status of fishes inhabiting rivers of Kerala (S.India) INTRODUCTION river. Habitat diversity was given foremost importance during selection of locations within the river system. Kerala is a land of rivers which harbour a rich The sites for habitat inventory were selected based on and diversified fish fauna characterized by many rare channel pattern, channel confinement, gradient and and endemic fish species.