Dong-Kyun KIM1, 2, Hyunbin JO1, Wan-Ok LEE1, Kiyun PARK1, and Ihn-Sil KWAK*1, 3
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Strategies for Conservation and Restoration of Freshwater Fish Species in Korea
KOREAN JOURNAL OF ICHTHYOLOGY, Vol. 21 Supplement, 29-37, July 2009 Received : April 22, 2009 ISSN: 1225-8598 Revised : June 6, 2009 Accepted : June 20, 2009 Strategies for Conservation and Restoration of Freshwater Fish Species in Korea By Eon-Jong Kang*, In-Chul Bang1 and Hyun Yang2 Inland Aquaculture Research Center, National Fisheries Research and Development Institute, Busan 619-902, Korea 1Department of Marine Biotechnology, Soonchunhyang University, Asan 336-745, Korea 2Institute of Biodiversity Research, Jeonju 561-211, Korea ABSTRACT The tiny fragment of freshwater body is providing home for huge biodiversity and resour- ces for the existence of human. The competing demand for freshwater have been increased rapidly and it caused the declination of biodiversity in recent decades. Unlike the natural process of extinction in gradual progress, the current species extinction is accelerated by human activity. As a result many fish species are already extinct or alive only in captivity in the world and about fifty eight animal species are in endangered in Korea including eighteen freshwater species. Conservation of biodiversity is the pro- cess by which the prevention of loss or damage is attained, and is often associated with management of the natural environment. The practical action is classified into in-situ, or ex-situ depending on the location of the conservation effort. Recovery means the process by which the status of endangerment is improved to persist in the wild by re-introduction of species from ex-situ conservation population into nature or translocation of some population. However there are a lot of restrictions to complete it and successful results are known very rare in case. -
Family-Bagridae-Overview-PDF.Pdf
FAMILY Bagridae Bleeker, 1858 - naked catfishes, bagrid catfishes [=Bagri, Bagrichthyoidei, Ritae, Bagrichthyes, Porcinae, Mystidae, Mystini, Bagroidinae, Pelteobagrini, Batasinae] GENUS Bagrichthys Bleeker, 1857 - bagrid catfishes [=Pseudobagrichthys] Species Bagrichthys hypselopterus (Bleeker, 1852) - blacklancer catfish Species Bagrichthys macracanthus (Bleeker, 1854) - Lamatang blacklancer catfish Species Bagrichthys macropterus (Bleeker, 1854) - false blacklancer Species Bagrichthys majusculus Ng, 2002 - Mun blacklancer Species Bagrichthys micranodus Roberts, 1989 - Kapuas blacklancer Species Bagrichthys obscurus Ng, 1999 - obscure blacklancer Species Bagrichthys vaillantii (Popta, 1906) - Vaillant's blacklancer [=macropterus] GENUS Bagroides Bleeker, 1851 - bagrid catfishes Species Bagroides melapterus Bleeker, 1851 - Bornean bagroides [=melanopterus] GENUS Bagrus Bosc, 1816 - bagrid catfishes Species Bagrus bajad (Forsskal, 1775) - bayad [=macropterus] Species Bagrus caeruleus Roberts & Stewart, 1976 - Lower Congo bagrus Species Bagrus degeni Boulenger, 1906 - Victoria bagrus Species Bagrus docmak (Forsskal, 1775) - semutundu [=koenigi, niger] Species Bagrus filamentosus Pellegrin, 1924 - Niger bagrus Species Bagrus lubosicus Lonnberg, 1924 - Lubosi bagrus Species Bagrus meridionalis Gunther, 1894 - kampango, kampoyo Species Bagrus orientalis Boulenger, 1902 - Pangani bagrus Species Bagrus tucumanus Burmeister, 1861- Tucuman bagrus Species Bagrus ubangensis Boulenger, 1902 - Ubangi bagrus Species Bagrus urostigma Vinciguerra, 1895 -
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Original Article PNIE 2021;2(1):53-61 https://doi.org/10.22920/PNIE.2021.2.1.53 pISSN 2765-2203, eISSN 2765-2211 Microhabitat Characteristics Determine Fish Community Structure in a Small Stream (Yudeung Stream, South Korea) Jong-Yun Choi , Seong-Ki Kim , Jeong-Cheol Kim , Hyeon-Jeong Lee , Hyo-Jeong Kwon , Jong-Hak Yun* National Institute of Ecology, Seocheon, Korea ABSTRACT Distribution of fish community depends largely on environmental disturbance such as habitat change. In this study, we evaluated the impact of environmental variables and microhabitat patch types on fish distribution in Yudeung Stream at 15 sites between early May and late June 2019. We used non-metric multidimensional scaling to examine the distribution patterns of fish in each site. Gnathopogon strigatus, Squalidus gracilis majimae, Zacco koreanus, and Zacco platypus were associated with riffle and boulder areas, whereas Iksookimia koreensis, Acheilognathus koreensis, Coreoleuciscus splendidus, Sarcocheilichthys nigripinnis morii, and Odontobutis interrupta were associated with large shallow areas. In contrast, Cyprinus carpio, Carassius auratus, Lepomis macrochirus, and Micropterus salmoides were found at downstream sites associated with large pool areas, sandy/clay-bottomed areas, and vegetated areas. On the basis of these results, we suggest that microhabitat patch types are important in determining the diversity and abundance of fish communities, since a mosaic of different microhabitats supports diverse fish species. As such, microhabitat patches are key components of freshwater stream ecosystem heterogeneity, and a suitable patch composition in stream construction or restoration schemes will support ecologically healthy food webs. Keywords: Aquatic macrophytes, Microhabitat, Pool, Riffle, River continuum, Zacco koreanus Introduction 2012). -
Family-Cyprinidae-Gobioninae-PDF
SUBFAMILY Gobioninae Bleeker, 1863 - gudgeons [=Gobiones, Gobiobotinae, Armatogobionina, Sarcochilichthyna, Pseudogobioninae] GENUS Abbottina Jordan & Fowler, 1903 - gudgeons, abbottinas [=Pseudogobiops] Species Abbottina binhi Nguyen, in Nguyen & Ngo, 2001 - Cao Bang abbottina Species Abbottina liaoningensis Qin, in Lui & Qin et al., 1987 - Yingkou abbottina Species Abbottina obtusirostris (Wu & Wang, 1931) - Chengtu abbottina Species Abbottina rivularis (Basilewsky, 1855) - North Chinese abbottina [=lalinensis, psegma, sinensis] GENUS Acanthogobio Herzenstein, 1892 - gudgeons Species Acanthogobio guentheri Herzenstein, 1892 - Sinin gudgeon GENUS Belligobio Jordan & Hubbs, 1925 - gudgeons [=Hemibarboides] Species Belligobio nummifer (Boulenger, 1901) - Ningpo gudgeon [=tientaiensis] Species Belligobio pengxianensis Luo et al., 1977 - Sichuan gudgeon GENUS Biwia Jordan & Fowler, 1903 - gudgeons, biwas Species Biwia springeri (Banarescu & Nalbant, 1973) - Springer's gudgeon Species Biwia tama Oshima, 1957 - tama gudgeon Species Biwia yodoensis Kawase & Hosoya, 2010 - Yodo gudgeon Species Biwia zezera (Ishikawa, 1895) - Biwa gudgeon GENUS Coreius Jordan & Starks, 1905 - gudgeons [=Coripareius] Species Coreius cetopsis (Kner, 1867) - cetopsis gudgeon Species Coreius guichenoti (Sauvage & Dabry de Thiersant, 1874) - largemouth bronze gudgeon [=platygnathus, zeni] Species Coreius heterodon (Bleeker, 1865) - bronze gudgeon [=rathbuni, styani] Species Coreius septentrionalis (Nichols, 1925) - Chinese bronze gudgeon [=longibarbus] GENUS Coreoleuciscus -
Characterization, Expression Profile, and Promoter Analysis of the Rhodeus Uyekii Vitellogenin Ao1 Gene
Int. J. Mol. Sci. 2014, 15, 18804-18818; doi:10.3390/ijms151018804 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article Characterization, Expression Profile, and Promoter Analysis of the Rhodeus uyekii Vitellogenin Ao1 Gene Hee Jeong Kong 1, Ju Lan Kim 1, Ji Young Moon 1, Woo-Jin Kim 1, Hyung Soo Kim 1, Jung Youn Park 1, Hyun Kook Cho 2,* and Cheul Min An 1 1 Biotechnology Research Division, National Fisheries Research and Development Institute, Busan 619-705, Korea; E-Mails: [email protected] (H.J.K.); [email protected] (J.L.K.); [email protected] (J.Y.M.); [email protected] (W.-J.K.); [email protected] (H.S.K.); [email protected] (J.Y.P.); [email protected] (C.M.A.) 2 Department of Molecular Biology, Pusan National University, Busan 609-735, Korea * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +82-51-510-3671; Fax: +82-51-513-9258. External Editor: Xiaofeng Jia Received: 21 July 2014; in revised form: 24 September 2014 / Accepted: 11 October 2014 / Published: 17 October 2014 Abstract: The fish Vitellogenin (Vg) gene has been applied as a biomarker for exposure to estrogenic compounds in the aquatic environment. In this study, we cloned and characterized Vg cDNA from the Korean rose bitterling Rhodeus uyekii (Ru-Vg). The Ru-Vg cDNA encodes a 1424-amino-acid polypeptide that belongs to the VgAo1 family and contains a putative signal peptide, lipovitellin I, phosvitin, and lipovitellin II, but does not contain the vWFD domain or the C-terminal peptide. -
And Intra-Species Replacements in Freshwater Fishes in Japan
G C A T T A C G G C A T genes Article Waves Out of the Korean Peninsula and Inter- and Intra-Species Replacements in Freshwater Fishes in Japan Shoji Taniguchi 1 , Johanna Bertl 2, Andreas Futschik 3 , Hirohisa Kishino 1 and Toshio Okazaki 1,* 1 Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan; [email protected] (S.T.); [email protected] (H.K.) 2 Department of Mathematics, Aarhus University, Ny Munkegade, 118, bldg. 1530, 8000 Aarhus C, Denmark; [email protected] 3 Department of Applied Statistics, Johannes Kepler University Linz, Altenberger Str. 69, 4040 Linz, Austria; [email protected] * Correspondence: [email protected] Abstract: The Japanese archipelago is located at the periphery of the continent of Asia. Rivers in the Japanese archipelago, separated from the continent of Asia by about 17 Ma, have experienced an intermittent exchange of freshwater fish taxa through a narrow land bridge generated by lowered sea level. As the Korean Peninsula and Japanese archipelago were not covered by an ice sheet during glacial periods, phylogeographical analyses in this region can trace the history of biota that were, for a long time, beyond the last glacial maximum. In this study, we analyzed the phylogeography of four freshwater fish taxa, Hemibarbus longirostris, dark chub Nipponocypris temminckii, Tanakia ssp. and Carassius ssp., whose distributions include both the Korean Peninsula and Western Japan. We found for each taxon that a small component of diverse Korean clades of freshwater fishes Citation: Taniguchi, S.; Bertl, J.; migrated in waves into the Japanese archipelago to form the current phylogeographic structure of Futschik, A.; Kishino, H.; Okazaki, T. -
Hemibarbus Labeo) Ecological Risk Screening Summary
Barbel Steed (Hemibarbus labeo) Ecological Risk Screening Summary U.S. Fish & Wildlife Service, August 2012 Revised, February 2017 Web Version, 1/14/2018 Photo: Chinese Academy of Fishery Sciences. Licensed under CC BY-NC 3.0. Available: http://fishbase.org/photos/PicturesSummary.php?StartRow=0&ID=17301&what=species&TotRe c=9. (February 2017). 1 Native Range and Status in the United States Native Range From Froese and Pauly (2016): “Asia: throughout the Amur basin [Berg 1964]; eastern Asia from the Amur basin to northern Vietnam, Japan and islands of Hainan and Taiwan [Reshetnikov et al. 1997].” Status in the United States This species has not been reported in the United States. 1 Means of Introductions in the United States This species has not been reported in the United States. Remarks From CABI (2017): “Other Scientific Names Acanthogobio oxyrhynchus Nikolskii, 1903 Barbus labeo Pallas, 1776 Barbus schlegelii Günther, 1868 Cyprinus labeo Pallas, 1776 Gobio barbus Temminck & Schlegel, 1846 Gobiobarbus labeo Pallas, 1776 Hemibarbus barbus Temminck & Schlegel, 1846 Hemibarbus longianalis Kimura, 1934 Pseudogobio chaoi Evermann & Shaw, 1927” 2 Biology and Ecology Taxonomic Hierarchy and Taxonomic Standing From ITIS (2017): “Kingdom Animalia Subkingdom Bilateria Infrakingdom Deuterostomia Phylum Chordata Subphylum Vertebrata Infraphylum Gnathostomata Superclass Osteichthyes Class Actinopterygii Subclass Neopterygii Infraclass Teleostei Superorder Ostariophysi Order Cypriniformes Superfamily Cyprinoidea Family Cyprinidae Genus Hemibarbus Bleeker, 1860 Species Hemibarbus labeo (Pallas, 1776)” “Taxonomic Status: valid” 2 Size, Weight, and Age Range From Froese and Pauly (2016): “Max length : 62.0 cm TL male/unsexed; [Novikov et al. 2002]; common length : 33.0 cm TL male/unsexed; [Berg 1964]; common length :40.6 cm TL (female); max. -
Sexual Selection for Male Dominance Reduces Opportunities for Female Mate Choice in the European Bitterling (Rhodeus Sericeus)
Molecular Ecology (2005) 14, 1533–1542 doi: 10.1111/j.1365-294X.2005.02534.x SexualBlackwell Publishing, Ltd. selection for male dominance reduces opportunities for female mate choice in the European bitterling (Rhodeus sericeus) M. REICHARD,* J. BRYJA,* M. ONDRA3KOVÁ,* M. DÁVIDOVÁ,† P. KANIEWSKA‡ and C. SMITH§ *Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Brno, Czech Republic; †Department of Zoology and Ecology, Faculty of Science, Masaryk University, Brno, Czech Republic; ‡Centre for Marine Studies, University of Queensland, Brisbane, Queensland 4072, Australia; §Department of Biology, University of Leicester, University Road, Leicester LE1 7RH, United Kingdom Abstract Sexual selection involves two main mechanisms: intrasexual competition for mates and intersexual mate choice. We experimentally separated intrasexual (male–male interference competition) and intersexual (female choice) components of sexual selection in a freshwater fish, the European bitterling (Rhodeus sericeus). We compared the roles of multiple morphological and behavioural traits in male success in both components of sexual com- petition, and their relation to male reproductive success, measured as paternity of off- spring. Body size was important for both female choice and male–male competition, though females also preferred males that courted more vigorously. However, dominant males often monopolized females regardless of female preference. Subordinate males were not excluded from reproduction and sired some offspring, possibly through sneaked ejaculations. Male dominance and a greater intensity of carotenoid-based red colouration in their iris were the best predictors of male reproductive success. The extent of red iris colouration and parasite load did not have significant effects on female choice, male dominance or male reproductive success. -
Resolving Cypriniformes Relationships Using an Anchored Enrichment Approach Carla C
Stout et al. BMC Evolutionary Biology (2016) 16:244 DOI 10.1186/s12862-016-0819-5 RESEARCH ARTICLE Open Access Resolving Cypriniformes relationships using an anchored enrichment approach Carla C. Stout1*†, Milton Tan1†, Alan R. Lemmon2, Emily Moriarty Lemmon3 and Jonathan W. Armbruster1 Abstract Background: Cypriniformes (minnows, carps, loaches, and suckers) is the largest group of freshwater fishes in the world (~4300 described species). Despite much attention, previous attempts to elucidate relationships using molecular and morphological characters have been incongruent. In this study we present the first phylogenomic analysis using anchored hybrid enrichment for 172 taxa to represent the order (plus three out-group taxa), which is the largest dataset for the order to date (219 loci, 315,288 bp, average locus length of 1011 bp). Results: Concatenation analysis establishes a robust tree with 97 % of nodes at 100 % bootstrap support. Species tree analysis was highly congruent with the concatenation analysis with only two major differences: monophyly of Cobitoidei and placement of Danionidae. Conclusions: Most major clades obtained in prior molecular studies were validated as monophyletic, and we provide robust resolution for the relationships among these clades for the first time. These relationships can be used as a framework for addressing a variety of evolutionary questions (e.g. phylogeography, polyploidization, diversification, trait evolution, comparative genomics) for which Cypriniformes is ideally suited. Keywords: Fish, High-throughput -
Fish Assemblage Structure Comparison Between Freshwater and Estuarine Habitats in the Lower Nakdong River, South Korea
Journal of Marine Science and Engineering Article Fish Assemblage Structure Comparison between Freshwater and Estuarine Habitats in the Lower Nakdong River, South Korea Joo Myun Park 1,* , Ralf Riedel 2, Hyun Hee Ju 3 and Hee Chan Choi 4 1 Dokdo Research Center, East Sea Research Institute, Korea Institute of Ocean Science and Technology, Uljin 36315, Korea 2 S&R Consultancy, Ocean Springs, MS 39564, USA; [email protected] 3 Ocean Policy Institute, Korea Institute of Ocean Science and Technology, Busan 49111, Korea; [email protected] 4 Fisheries Resources and Environment Division, East Sea Fisheries Research Institute, National Institute of Fisheries Science, Gangneung 25435, Korea; [email protected] * Correspondence: [email protected]; Tel.: +82-54-780-5344 Received: 6 June 2020; Accepted: 3 July 2020; Published: 5 July 2020 Abstract: Variabilities of biological communities in lower reaches of urban river systems are highly influenced by artificial constructions, alterations of flow regimes and episodic weather events. Impacts of estuary weirs on fish assemblages are particularly distinct because the weirs are disturbed in linking between freshwater and estuarine fish communities, and migration successes for regional fish fauna. This study conducted fish sampling at the lower reaches of the Nakdong River to assess spatio-temporal variations in fish assemblages, and effects of estuary weir on structuring fish assemblage between freshwater and estuary habitats. In total, 20,386 specimens comprising 78 species and 41 families were collected. The numerical dominant fish species were Tachysurus nitidus (48.8% in total abundance), Hemibarbus labeo (10.7%) and Chanodichthys erythropterus (3.6%) in the freshwater region, and Engraulis japonicus (10.0%), Nuchequula nuchalis (7.7%) and Clupea pallasii (5.2%) in the estuarine site. -
PHYLOGENY and ZOOGEOGRAPHY of the SUPERFAMILY COBITOIDEA (CYPRINOIDEI, Title CYPRINIFORMES)
PHYLOGENY AND ZOOGEOGRAPHY OF THE SUPERFAMILY COBITOIDEA (CYPRINOIDEI, Title CYPRINIFORMES) Author(s) SAWADA, Yukio Citation MEMOIRS OF THE FACULTY OF FISHERIES HOKKAIDO UNIVERSITY, 28(2), 65-223 Issue Date 1982-03 Doc URL http://hdl.handle.net/2115/21871 Type bulletin (article) File Information 28(2)_P65-223.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP PHYLOGENY AND ZOOGEOGRAPHY OF THE SUPERFAMILY COBITOIDEA (CYPRINOIDEI, CYPRINIFORMES) By Yukio SAWADA Laboratory of Marine Zoology, Faculty of Fisheries, Bokkaido University Contents page I. Introduction .......................................................... 65 II. Materials and Methods ............... • • . • . • . • • . • . 67 m. Acknowledgements...................................................... 70 IV. Methodology ....................................•....•.........•••.... 71 1. Systematic methodology . • • . • • . • • • . 71 1) The determinlttion of polarity in the morphocline . • . 72 2) The elimination of convergence and parallelism from phylogeny ........ 76 2. Zoogeographical methodology . 76 V. Comparative Osteology and Discussion 1. Cranium.............................................................. 78 2. Mandibular arch ...................................................... 101 3. Hyoid arch .......................................................... 108 4. Branchial apparatus ...................................•..••......••.. 113 5. Suspensorium.......................................................... 120 6. Pectoral