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Generic Names in Magnaporthales Ning Zhang, Jing Luo, Amy Y
Generic names in Magnaporthales Ning Zhang, Jing Luo, Amy Y. Rossman, Takayuki Aoki, Izumi Chuma, Pedro W. Crous, Ralph Dean, Ronald P. de Vries, Nicole Donofrio, Kevin D. Hyde, et al. To cite this version: Ning Zhang, Jing Luo, Amy Y. Rossman, Takayuki Aoki, Izumi Chuma, et al.. Generic names in Magnaporthales. IMA Fungus, 2016, 7 (1), pp.155-159. 10.5598/imafungus.2016.07.01.09. hal- 01608608 HAL Id: hal-01608608 https://hal.archives-ouvertes.fr/hal-01608608 Submitted on 28 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - ShareAlike| 4.0 International License IMA FUNGUS · 7(1): 155–159 (2016) doi:10.5598/imafungus.2016.07.01.09 ARTICLE Generic names in Magnaporthales Ning Zhang1, Jing Luo1, Amy Y. Rossman2, Takayuki Aoki3, Izumi Chuma4, Pedro W. Crous5, Ralph Dean6, Ronald P. de Vries5,7, Nicole Donofrio8, Kevin D. Hyde9, Marc-Henri Lebrun10, Nicholas J. Talbot11, Didier Tharreau12, Yukio Tosa4, Barbara Valent13, Zonghua Wang14, and Jin-Rong Xu15 1Department of Plant Biology and Pathology, Rutgers University, New Brunswick, NJ 08901, USA; corresponding author e-mail: zhang@aesop. -
Genetic and Pathogenic Differences Between Microdochium Nivale and Microdochium Majus
Genetic and Pathogenic Differences Between Microdochium nivale and Microdochium majus by Linda Elizabeth Jewell A Thesis Presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Environmental Science Guelph, Ontario, Canada © Linda Elizabeth Jewell, December, 2013 ABSTRACT GENETIC AND PATHOGENIC DIFFERENCES BETWEEN MICRODOCHIUM NIVALE AND MICRODOCHIUM MAJUS Linda Elizabeth Jewell Advisor: University of Guelph, 2013 Professor Tom Hsiang Microdochium nivale and M. majus are fungal plant pathogens that cause cool-temperature diseases on grasses and cereals. Nucleotide sequences of four genetic regions were compared between isolates of M. nivale and M. majus from Triticum aestivum (wheat) collected in North America and Europe and for isolates of M. nivale from turfgrasses from both continents. Draft genome sequences were assembled for two isolates of M. majus and two of M. nivale from wheat and one from turfgrass. Dendograms constructed from these data resolved isolates of M. majus into separate clades by geographic origin. Among M. nivale, isolates were instead resolved by host plant species. Amplification of repetitive regions of DNA from M. nivale isolates collected from two proximate locations across three years grouped isolates by year, rather than by location. The mating-type (MAT1) and associated flanking genes of Microdochium were identified using the genome sequencing data to investigate the potential for these pathogens to produce ascospores. In all of the Microdochium genomes, and in all isolates assessed by PCR, only the MAT1-2-1 gene was identified. However, unpaired, single-conidium-derived colonies of M. majus produced fertile perithecia in the lab. -
Resolving the Polyphyletic Nature of Pyricularia (Pyriculariaceae)
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY ▪:1–36. Resolving the polyphyletic nature of Pyricularia (Pyriculariaceae) S. Klaubauf1,2, D. Tharreau3, E. Fournier4, J.Z. Groenewald1, P.W. Crous1,5,6*, R.P. de Vries1,2, and M.-H. Lebrun7* 1CBS-KNAW Fungal Biodiversity Centre, 3584 CT Utrecht, The Netherlands; 2Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands; 3UMR BGPI, CIRAD, Campus International de Baillarguet, F-34398 Montpellier, France; 4UMR BGPI, INRA, Campus International de Baillarguet, F-34398 Montpellier, France; 5Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa; 6Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; 7UR1290 INRA BIOGER-CPP, Campus AgroParisTech, F-78850 Thiverval-Grignon, France *Correspondence: P.W. Crous, [email protected]; M.-H. Lebrun, [email protected] Abstract: Species of Pyricularia (magnaporthe-like sexual morphs) are responsible for major diseases on grasses. Pyricularia oryzae (sexual morph Magnaporthe oryzae) is responsible for the major disease of rice called rice blast disease, and foliar diseases of wheat and millet, while Pyricularia grisea (sexual morph Magnaporthe grisea) is responsible for foliar diseases of Digitaria. Magnaporthe salvinii, M. poae and M. rhizophila produce asexual spores that differ from those of Pyricularia sensu stricto that has pyriform, 2-septate conidia produced on conidiophores with sympodial proliferation. Magnaporthe salvinii was recently allocated to Nakataea, while M. poae and M. rhizophila were placed in Magnaporthiopsis. To clarify the taxonomic relationships among species that are magnaporthe- or pyricularia-like in morphology, we analysed phylogenetic relationships among isolates representing a wide range of host plants by using partial DNA sequences of multiple genes such as LSU, ITS, RPB1, actin and calmodulin. -
The Pentose Catabolic Pathway of the Rice-Blast Fungus Magnaporthe Oryzae Involves a Novel Pentose Reductase Restricted to Few Fungal Species
FEBS Letters 587 (2013) 1346–1352 journal homepage: www.FEBSLetters.org The pentose catabolic pathway of the rice-blast fungus Magnaporthe oryzae involves a novel pentose reductase restricted to few fungal species Sylvia Klaubauf a,c, Cecile Ribot b,c,1, Delphine Melayah b,c, Arnaud Lagorce b,c,2, Marc-Henri Lebrun c,d, ⇑ Ronald P. de Vries a,c,e, a CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands b Bayer Cropscience, Lyon, France c MPA, UMR 2847 CNRS, Bayer Crop Science, Lyon, France d BIOGER, UR 1290 INRA, Thiverval-Grignon, France e Microbiology & Kluyver Centre for Genomics of Industrial Fermentation, Utrecht, The Netherlands article info abstract Article history: A gene (MoPRD1), related to xylose reductases, was identified in Magnaporthe oryzae. Recombinant Received 18 February 2013 MoPRD1 displays its highest specific reductase activity toward L-arabinose and D-xylose. Km and Vmax Accepted 2 March 2013 values using L-arabinose and D-xylose are similar. MoPRD1 was highly overexpressed 2–8 h after Available online 13 March 2013 transfer of mycelium to D-xylose or L-arabinose, compared to D-glucose. Therefore, we conclude that MoPDR1 is a novel pentose reductase, which combines the activities and expression patterns of fun- Edited by Judit Ovadi gal L-arabinose and D-xylose reductases. Phylogenetic analysis shows that PRD1 defines a novel fam- ily of pentose reductases related to fungal D-xylose reductases, but distinct from fungal L-arabinose Keywords: reductases. The presence of PRD1, L-arabinose and D-xylose reductases encoding genes in a given Pentose catabolism Pentose reductase species is variable and likely related to their life style. -
Fungal Planet Description Sheets: 371-399
Fungal Planet Description Sheets: 371-399 By: P.R. Crous, M.J. Wingfield, J.J. Le Roux, D.M. Richardson, D. Strasberg, R.G. Shivas, P. Alvarado, J. Edwards, G. Moreno, R. Sharma, M.S. Sonawane, Y.P. Tan, A. Altés, T. Barasubiye, C.W. Barnes, R.A. Blanchette, D. Boertmann, A. Bogo, J.R. Carlavilla, R. Cheewangkoon, R. Daniel, Z.W. de Beer, M. de Jesús Yáñez-Morales, T.A. Duong, J. Fernández-Vicente, A.D.W. Geering, D.I. Guest, B.W. Held, M. Heykoop, V. Hubka, A.M. Ismail, S.C. Kajale, W. Khemmuk, M. Kolařík, R. Kurli, R. Lebeuf, C.A. Lévesque, L. Lombard, D. Magista, J.L. Manjón, S. Marincowitz, J.M. Mohedano, A. Nováková, N.H. Oberlies, E.C. Otto, N.D. Paguigan, I.G. Pascoe, J.L. Pérez-Butrón, G. Perrone, P. Rahi, H.A. Raja, T. Rintoul, R.M.V. Sanhueza, K. Scarlett, Y.S. Shouche, L.A. Shuttleworth, P.W.J. Taylor, R.G. Thorn, L.L. Vawdrey, R. Solano-Vidal, A. Voitk, P.T.W. Wong, A.R. Wood, J.C. Zamora, and J.Z. Groenewald. “Fungal Planet Description Sheets: 371-399.” Crous, P. W., Wingfield, M. J., Le Roux, J. J., Richardson, D. M., Strasberg, D., Shivas, R. G., Alvarado, P., Edwards, J., Moreno, G., Sharma, R., Sonawane, M. S., Tan, Y. P., Altes, A., Barasubiye, T., Barnes, C. W., Blanchette, R. A., Boertmann, D., Bogo, A., Carlavilla, J. R., Cheewangkoon, R., Daniel, R., de Beer, Z. W., de Jesus Yanez-Morales, M., Duong, T. A., Fernandez-Vicente, J., Geering, A. -
Discovered and Re- Evaluation of Pleurophragmium
Fungal Diversity Teleomorph of Rhodoveronaea (Sordariomycetidae) discovered and re- evaluation of Pleurophragmium 1* Martina Réblová 1Department of Plant Taxonomy, Institute of Botany, Academy of Sciences, CZ-252 43 Průhonice, Czech Republic Réblová, M. (2009). Teleomorph of Rhodoveronaea (Sordariomycetidae) discovered and re-evolution of Pleurophragmium. Fungal Diversity 36: 129-139. An undescribed teleomorph was discovered for Rhodoveronaea (Sordariomycetidae), a previously known anamorph genus with the single species R. varioseptata characterized by pigmented, septate conidia and holoblastic-denticulate conidiogenesis. The teleomorph is a lignicolous perithecial ascomycete with nonstromatic, dark perithecia, consisting of a globose immersed venter and stout conical emerging neck; cylindrical long-stipitate asci, nonamyloid apical annulus and fusiform, septate, hyaline ascospores. The fertile conidiophores of R. varioseptata were associated with the perithecia on the natural substratum and they were also obtained in vitro. Because no teleomorph was designated in the protologue of Rhodoveronaea, the new Article 59.7 of the International Code of Botanical Nomenclature is applied in this case and Rhodoveronaea is expanded to holomorphic application by teleomorphic epitypification of the type species R. varioseptata. The name R. varioseptata is fully adopted for the discovered teleomorph. On the basis of detailed morphology, cultivation studies and phylogenetic analyses of ncLSU rDNA sequences, Rhodoveronaea is segregated from the morphologically similar genera Lentomitella and Ceratosphaeria; its relationship with Ceratosphaeria fragilis and C. rhenana is discussed. The relationship of Rhodoveronaea with the morphologically similar Dactylaria parvispora is investigated using morphological features and molecular sequence data. Phylogenetic findings based on ncLSU rDNA sequence data indicate that Dactylaria is polyphyletic. The genus Pleurophragmium is excluded from the synonymy of Dactylaria and is re-evaluated for P. -
Genome Wide Analysis of the Transition to Pathogenic Lifestyles in Magnaporthales Fungi Received: 25 January 2018 Ning Zhang1,2, Guohong Cai3, Dana C
www.nature.com/scientificreports OPEN Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi Received: 25 January 2018 Ning Zhang1,2, Guohong Cai3, Dana C. Price4, Jo Anne Crouch 5, Pierre Gladieux6, Bradley Accepted: 29 March 2018 Hillman1, Chang Hyun Khang7, Marc-Henri LeBrun8, Yong-Hwan Lee9, Jing Luo1, Huan Qiu10, Published: xx xx xxxx Daniel Veltri11, Jennifer H. Wisecaver12, Jie Zhu7 & Debashish Bhattacharya2 The rice blast fungus Pyricularia oryzae (syn. Magnaporthe oryzae, Magnaporthe grisea), a member of the order Magnaporthales in the class Sordariomycetes, is an important plant pathogen and a model species for studying pathogen infection and plant-fungal interaction. In this study, we generated genome sequence data from fve additional Magnaporthales fungi including non-pathogenic species, and performed comparative genome analysis of a total of 13 fungal species in the class Sordariomycetes to understand the evolutionary history of the Magnaporthales and of fungal pathogenesis. Our results suggest that the Magnaporthales diverged ca. 31 millon years ago from other Sordariomycetes, with the phytopathogenic blast clade diverging ca. 21 million years ago. Little evidence of inter-phylum horizontal gene transfer (HGT) was detected in Magnaporthales. In contrast, many genes underwent positive selection in this order and the majority of these sequences are clade-specifc. The blast clade genomes contain more secretome and avirulence efector genes, which likely play key roles in the interaction between Pyricularia species and their plant hosts. Finally, analysis of transposable elements (TE) showed difering proportions of TE classes among Magnaporthales genomes, suggesting that species-specifc patterns may hold clues to the history of host/environmental adaptation in these fungi. -
Notes for Genera Update – Ascomycota: 6616-6821 Article
Mycosphere 9(1): 115–140 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/1/2 Copyright © Guizhou Academy of Agricultural Sciences Notes for genera update – Ascomycota: 6616-6821 Wijayawardene NN1,2, Hyde KD2, Divakar PK3, Rajeshkumar KC4, Weerahewa D5, Delgado G6, Wang Y7, Fu L1* 1Shandong Institute of Pomologe, Taian, Shandong Province, 271000, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3Departamento de Biologı ´a Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, 28040 Madrid, Spain 4National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology (Fungi) Group, Agharkar Research Institute, Pune, Maharashtra 411 004, India 5Department of Botany, The Open University of Sri Lanka, Nawala, Nugegoda, Sri Lanka 610900 Brittmoore Park Drive Suite G Houston, TX 77041 7Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, People’s Republic of China Wijayawardene NN, Hyde KD, Divakar PK, Rajeshkumar KC, Weerahewa D, Delgado G, Wang Y, Fu L 2018 – Notes for genera update – Ascomycota: 6616-6821. Mycosphere 9(1), 115–140, Doi 10.5943/mycosphere/9/1/2 Abstract Taxonomic knowledge of the Ascomycota, is rapidly changing because of use of molecular data, thus continuous updates of existing taxonomic data with new data is essential. In the current paper, we compile existing data of several genera missing from the recently published “Notes for genera-Ascomycota”. This includes 206 entries. Key words – Asexual genera – Data bases – Sexual genera – Taxonomy Introduction Maintaining updated databases and checklists of genera of fungi is an important and essential task, as it is the base of all taxonomic studies. -
A New Order of Aquatic and Terrestrial Fungi for Achroceratosphaeria and Pisorisporium Gen
Persoonia 34, 2015: 40–49 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X685544 Pisorisporiales, a new order of aquatic and terrestrial fungi for Achroceratosphaeria and Pisorisporium gen. nov. in the Sordariomycetes M. Réblová1, J. Fournier 2, V. Štěpánek3 Key words Abstract Four morphologically similar specimens of an unidentified perithecial ascomycete were collected on decaying wood submerged in fresh water. Phylogenetic analysis of DNA sequences from protein-coding and Achroceratosphaeria ribosomal nuclear loci supports the placement of the unidentified fungus together with Achroceratosphaeria in a freshwater strongly supported monophyletic clade. The four collections are described as two new species of the new genus Hypocreomycetidae Pisorisporium characterised by non-stromatic, black, immersed to superficial perithecial ascomata, persistent para- Koralionastetales physes, unitunicate, persistent asci with an amyloid apical annulus and hyaline, fusiform, cymbiform to cylindrical, Lulworthiales transversely multiseptate ascospores with conspicuous guttules. The asexual morph is unknown and no conidia multigene analysis were formed in vitro or on the natural substratum. The clade containing Achroceratosphaeria and Pisorisporium is systematics introduced as the new order Pisorisporiales, family Pisorisporiaceae in the class Sordariomycetes. It represents a new lineage of aquatic fungi. A sister relationship for Pisorisporiales with the Lulworthiales and Koralionastetales is weakly supported -
Extensive Horizontal Gene Transfers Between Plant Pathogenic Fungi Huan Qiu1*, Guohong Cai2, Jing Luo3, Debashish Bhattacharya1 and Ning Zhang3,4*
Qiu et al. BMC Biology (2016) 14:41 DOI 10.1186/s12915-016-0264-3 RESEARCH ARTICLE Open Access Extensive horizontal gene transfers between plant pathogenic fungi Huan Qiu1*, Guohong Cai2, Jing Luo3, Debashish Bhattacharya1 and Ning Zhang3,4* Abstract Background: Horizontal gene transfer (HGT) plays an important role in the adaptation of lineages to changing environments. The extent of this process in eukaryotes, however, remains controversial. The most well-known and dramatic form of HGT represents intracellular gene transfer from endosymbionts to the host nuclear genome. Such episodes of transfer typically involve hundreds of genes and are thought to be possible only in the case of endosymbiosis. Results: Using a conservative phylogenomic approach, we analyzed genomic data from the fungal pathogen Magnaporthiopsis incrustans in the order Magnaporthales and identified two instances of exclusive sharing of HGT-derived gene markers between Magnaporthales and another lineage of plant-pathogenic fungi in the genus Colletotrichum. Surprisingly, inspection of these data demonstrated that HGT is far more widespread than anticipated, with more than 90 genes (including 33 highly supported candidates) being putatively transferred between Magnaporthales and Colletotrichum. These gene transfers are often physically linked in the genome and show more than two-fold functional enrichment in carbohydrate activating enzymes associated with plant cell wall degradation. Conclusions: Our work provides a novel perspective on the scale of HGT between eukaryotes. These results challenge the notion that recognized HGT plays a minor role in the evolution of fungal lineages, and in the case we describe, is likely implicated in the evolution of plant pathogenesis. More generally, we suggest that the expanding database of closely related eukaryotic genomes and the application of novel analytic methods will further underline the significant impact of foreign gene acquisition across the tree of life. -
(Oryza Sativa L.) and Defense Against Nematodes Njira
Cover_Njira.pdf 1 5/12/16 09:51 Possibilities of endophytic fungi from Kenya for growth promotion rice (Oryza sativa L.) and defense against nematodes C M Y CM MY CY CMY K Possibilities of endophytic fungi from Kenya for growth promotion of rice (Oryza sativa L.) and defense against nematodes Njira Njira Pili Njira Pili ISBN 978-9-0598995-1-3 2016 9 789059 899513 Progress is made by trial and failure; the failures are generally a hundred times more numerous than the successes; yet they are usually left unchronicled. William Ramsay, 1852 to 1916. i Promotors: Prof. Dr. Godelieve Gheysen Department of Molecular Biotechnology, Coupure Links 653, 9000 Gent. Faculty of Bioscience Engineering, Ghent University. Prof. Dr. Richard Kiprono Mibey Moi University, P.O Box 3900-30100, Eldoret, Kenya. Prof. Dr. ir. Monica Höfte Department of Crop Protection, Coupure Links 653, 9000 Gent. Faculty of Bioscience Engineering, Ghent University Dean: Prof. Dr. ir. Marc Van Meirvenne. Rector: Prof. Dr. Anne De Paepe. ii Possibilities of endophytic fungi from Kenya for growth promotion of rice (Oryza sativa L.) and defense against nematodes Njira Njira Pili Thesis submitted in fulfilment of the requirements for the degree of Doctor (PhD) in Applied Biological Sciences iii Dutch translation of the title: Mogelijkheden van endofytische schimmels uit Kenia voor groeibevordering in rijst (Oryza sativa L.) en verdediging tegen nematoden. Cover illustration Front: An upland rice field in Kenya. Pili, N.N. (2016). Possibilities of endophytic fungi from Kenya for growth promotion of rice (Oryza sativa L.) and defense against nematodes. PhD thesis, Ghent University, Ghent, Belgium. -
The Lipman Log Newsletter, 2015
The Lipman Log 2015 B. Goodman, T. Barkay, M. Häggblom Marvelous microbes Barkay Lab J. Hunter-Cevera, D. Eveleigh Rutgers Day News from the Chair, Max Häggblom and Marvelous Microbiology” is our program theme. As in previous years, members of the G.H. Cook Biochemistry and Greetings from Lipman Hall! This issue of the Microbiology Undergraduate Student Club and the ASM Student Lipman Log includes some of the highlights Chapter, and other graduate students of the department coached from the 2014-2015 academic year. We hope budding scientists in the wonders of biochemistry and you will enjoy reading about the various microbiology, this time with a new “Cheese or Feet?” activity (see activities and accomplishments of our page 9). students and faculty, and the awards that they have received. We continuously work on updating our biochemistry and microbiology laboratory courses and introducing new experiments It is our distinct pleasure to congratulate Dr. Ning Zhang on her and lab modules. On page 6 we highlight the exciting recent promotion to Associate Professor with tenure. You can read about development with the use of electronic notebooks in the her exciting research program in elucidating the evolution, microbiology teaching laboratory. phylogenomics and systematics of fungi on page 3. She also received the Board of Trustees Research Fellowship for Scholarly Our scholarly and undergraduate and graduate programs in Excellence for 2015 as one of Rutgers University's distinguished biochemistry and microbiology continue to flourish, and it is young faculty members. Furthermore, Ning was recently awarded always a delight to follow the achievements of our students.