Persoonia 42, 2019: 205–227 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2019.42.08
Re-evaluation of Mycoleptodiscus species and morphologically similar fungi
M. Hernández-Restrepo1, J.D.P. Bezerra2, Y.P. Tan3, N. Wiederhold4, P.W. Crous1,5,6, J. Guarro7, J. Gené7
Key words Abstract Mycoleptodiscus includes plant pathogens, animal opportunists, saprobic and endophytic fungi. The present study presents the first molecular phylogeny and revision of the genus based on four loci, including ITS, Ascomycota LSU, rpb2, and tef1. An extensive collection of Mycoleptodiscus cultures, including ex-type strains from the CBS, Dothideomycetes IMI, MUCL, BRIP, clinical isolates from the USA, and fresh isolates from Brazil and Spain, was studied morpho- fungal pathogen logically and phylogenetically to resolve their taxonomy. The study showed that Mycoleptodiscus sensu lato is Muyocopron polyphyletic. Phylogenetic analysis places Mycoleptodiscus in Muyocopronales (Dothideomycetes), together with mycoses Arxiella, Leptodiscella, Muyocopron, Neocochlearomyces, and Paramycoleptodiscus. Mycoleptodiscus terrestris, new taxa the type species, and M. sphaericus are reduced to synonyms, and one new species is introduced, M. suttonii. Sordariomycetes Mycoleptodiscus atromaculans, M. coloratus, M. freycinetiae, M. geniculatus, M. indicus, M. lateralis (including M. unilateralis and M. variabilis as its synonyms) and M. taiwanensis belong to Muyocopron (Muyocopronales, Dothideomycetes), and M. affinis, and M. lunatus to Omnidemptus (Magnaporthales, Sordariomycetes). Based on phylogenetic analyses we propose Muyocopron alcornii sp. nov., a fungus associated with leaf spots on Epidendrum sp. (Orchidaceae) in Australia, Muyocopron zamiae sp. nov. associated with leaf spots on Zamia (Zamiaceae) in the USA, and Omnidemptus graminis sp. nov. isolated from a grass (Poaceae) in Spain. Furthermore, Neomycolepto discus venezuelense gen. & sp. nov. is introduced for a genus similar to Mycoleptodiscus in Muyocopronaceae.
Article info Received: 20 December 2018; Accepted: 7 February 2019; Published: 3 May 2019.
INTRODUCTION Whitton et al. 2012, Tibpromma et al. 2018). The sexual morph has not been described for any species of the genus, except Mycoleptodiscus was proposed to accommodate M. terrestris, for M. affinis, which was introduced as Omnidemptus affinis by a species previously included in the invalid genus Leptodiscus Cannon & Alcorn (1994). Omnidemptus is a monotypic genus (Gerdemann 1953), and M. sphaericus (Ostazeski 1967). characterised by having superficial, perithecial ascomata, cylin- Species of Leptodiscus were originally characterised by sporo- drical-clavate asci, with an apical pore, and a small ring which dochial conidiomata, thick-walled holoblastic conidiogenous stains dark blue with Melzer’s reagent and ascospores that are cells that produce hyaline, 1-septate conidia with appendages fusiform, 1–3-septate and hyaline (Cannon & Alcorn 1994). at each end. Subsequently, Sutton & Alcorn (1990) emended The first phylogenetic approach of a Mycoleptodiscus species the generic concept to include species with 0–2-septate conidia was based on LSU rDNA sequences from M. coloratus (Thong- with polar and lateral appendages or lacking appendages, and kantha et al. 2009), retaining this genus in Magnaporthales frequently producing appressoria (Sutton & Hodges 1976, Sut- (Sordariomycetes). Later, Luo & Zhang (2013) established that ton & Alcorn 1990, Alcorn 1994, Whitton et al. 2012). Currently, M. affinis (= O. affinis) was also related to Magnaporthaceae. Mycoleptodiscus comprises 18 species (Ostazeski 1967, Sut- However, Klaubauf et al. (2014) demonstrated that M. coloratus ton & Hodges 1976, Sutton & Alcorn 1985, 1990, Matsushima and M. affinis were unrelated, the former affine to Ophiocera 1987, 1993, Bills & Polishook 1992a, Alcorn 1994, Ando 1996, ceae and the latter affine to Magnaporthaceae. Recently, Crous et al. (2018) showed that Mycoleptodiscus, 1 Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD Utrecht, based on M. terrestris, the type species, was a member of The Netherlands; Muyocopronales, a newly proposed order in Dothideomycetes corresponding author e-mail: [email protected]. (Mapook et al. 2016a). Furthermore, analyses of sequences 2 Departamento de Micologia Prof. Chaves Batista, Universidade Federal de deposited in the GenBank database as M. indicus or Myco Pernambuco, Av. Prof. Moraes Rego, s/n, Centro de Biociências, Cidade Universitária, CEP: 50670-901, Recife, PE, Brazil. leptodiscus sp. (Dewar & Sigler 2010, Metry et al. 2010, Koo 3 Queensland Plant Pathology Herbarium (BRIP), Department of Agricul- et al. 2012) showed that they are related to Muyocopron ture and Fisheries, Ecosciences Precinct, 41 Boggo Road, Dutton Park, (Muyocopronales). Muyocopron was proposed by Spegazzini Queensland, Australia 4102. (1881), re-described by Saccardo (1883), and its taxonomi- 4 Fungus Testing Laboratory, Department of Pathology, University of Texas cal placement treated initially in Microthyriaceae (Von Arx & Health Science Center at San Antonio, San Antonio, Texas, USA. 5 Wageningen University and Research Centre (WUR), Laboratory of Phyto- Müller 1975, Lumbsch & Huhndorf 2007) and later in Muyo pathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands. copronaceae (Hyde et al. 2013, Pang et al. 2013, Mapook et al. 6 Department of Biochemistry, Genetics and Microbiology, Forestry and 2016a). Muyocopron is characterised by pseudo-thyriothecial, Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag superficial, flattened, carbonaceous, brittle ascomata, with X20, Pretoria 0028, Pretoria, 0002, South Africa. 7 Unitat de Micologia, Facultat de Medicina i Ciències de la Salut, Universitat pseudoparaphyses that are longer than the asci and ellipsoidal Rovira i Virgili and IISPV, C.P. 43201 Reus, Tarragona, Spain. to ovate, unicellular ascospores (Hyde et al. 2013, Mapook et al.
© 2019 Naturalis Biodiversity Center & Westerdijk Fungal Biodiversity Institute You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights. 206 Persoonia – Volume 42, 2019 (2016) (2007) (2007) al. al. al. et study et et this References Vu et al. (2019) Vu et al. Madrid et al. (2012), Vu This study This study This study This study et al. (2018) Tibpromma This study Voglmayr et al. (2016) Voglmayr This study This study Schoch et al. (2009) This study Schoch et al. (2014) This study Pang et al. (2013) This study Campbell et al. (2007) This study Campbell et al. (2007) This study This study This study This study This study This study This study This study Stenroos et al. (2010) Stenroos et al. (2010) This study Wu et al. (2011) Wu This study Mapook et al. (2016a, b) Mapook et al. (2016a, b) Mapook et al. (2016a, b) This study Crous et al. (2014), this study This study Crous et al. (2018) – MK495958 MK495959 MK495962 MK495973 MG646985 MK495974 KU234132 MK495963 MK495975 GU349052 MK495964 DQ497606 – KC692157 MK495965 – MK495966 – MK495967 MK495968 MK495969 MK495970 – MK495971 MK495972 MK875803 – – MK495956 – MK495961 – – – MK495957 MK495954 MK495960 –
3 – MK495955 MK492711 MK492714 MK492715 MK492718 MK492731 – MK492732 KU234115 MK492719 MK492733 GU371742 MK492720 DQ522854 MK492721 – MK492722 – MK492723 – MK492724 MK492725 MK492726 MK492727 MK492728 MK492729 MK492730 MK875802 – – MK492712 – MK492717 KY225778 KY225779 KY225780 MK492713 MK492710 MK492716 – – – – – – – – – – – – – – – – – – – – – – – – – – – – – – – Campbell – Campbell – – – rpb1 rpb2 tef1 Tibpromma – Tibpromma – – – – – – – – GenBank accession numbers MH870201 MH870275 MK487710 MK487711 MK487714 MK487727 MK487728 MG646946 KU234100 MK487715 MK487729 GU301808 MK487716 AY544681 MK487717 KC692156 MK487718 EF175655 MK487719 EF175661 MK487720 MK487721 MK487722 MK487723 MK487724 MK487725 MK487726 MK874616 EU940084 EU940085 MK487708 JQ036230 MK487713 LSU KU726965 KU726966 KU726967 MK487709 KP004477 MK487712 LR025181
MH858565 NR_145359 NR_160197 MK487737 MK487740 – MK487753 NR_158860 KU234100 MK487741 – – MK487742 NR_111220 MK487743 KC692156 MK487744 JN942354 MK487745 JN942349 MK487746 MK487747 MK487748 MK487749 MK487750 MK487751 MK487752 MK874615 EU940161 EU940162 – EF175665 – EF175666 (2019), MK487735 – MK487739 ITS – KY070274 – – – MK487736 NR_137930 MK487738 LR025180
BRIP 16983, ATCC 96451 ATCC 16983, BRIP L113 20066 BRIP 200215 ATCC 16943, BRIP AFTOL-ID 274 AFTOL-ID UAMH 10746 UTHSC DI17-18 UTHSC DI 17-23 UTHSC DI 17-21 UTHSC DI 17-17 UTHSC DI 17-22 UTHSC DI 17-19 UTHSC DI 17-20 UTHSC DI 17-24
CBS 141314
BPI GB1369 Other collections CPC 22951 BRIP 16247, ATCC 200213 ATCC 16247, BRIP
T T T T
T
T T T T T T T T T T T
T
2 MFLUCC 17-0545 CBS 136918 MFLUCC 14-1103 CBS 141029 CBS 141033 CBS 276.72 CBS 141030 CBS 100822 URM 7802 DAOM 231303 URM 7801 NTOU 3636‡ NTOU CBS 127677 R68_1‡ CBS 145310 A402_1B‡ CBS 145315 CBS 145313 CBS 145309 CBS 145314 CBS 145311 CBS 145312 CBS 145316 FMR 13797 M151‡ M152‡ CBS 138853 SS2113‡ SS81.02‡ CBS 400.65 CBS 144927 CBS 721.95 MFLUCC 14-1106 MUCL 34983 MUCL MFLUCC 10-0041 CBS 719.95 Strains CBS 720.95 MFLUCC 16-1370 CBS 203.71 MFLUCC 14-1108 CBS 268.65 IMI 324533 BRIP 43897 BRIP Dothideomycetes and Sordariomycetes . sp. sp. sp. sp. sp. sp. sp. sp. sp. sp. sp. sp. sp.
Mycoleptodiscus lateralis Mycoleptodiscus Mycoleptodiscus terrestris Mycoleptodiscus terrestris Mycoleptodiscus Mycoleptodiscus Mycoleptodiscus indicus Mycoleptodiscus Mycoleptodiscus Mycoleptodiscus Mycoleptodiscus Mycoleptodiscus Mycoleptodiscus Mycoleptodiscus Mycoleptodiscus Mycoleptodiscus
Mycoleptodiscus geniculatus Mycoleptodiscus atromaculans
Mycoleptodiscus variabilis Old names Mycoleptodiscus coloratus Mycoleptodiscus
Mycoleptodiscus unilateralis
’
GenBank accession numbers included in the alignments of 1
Asterodiscus tamaricis Mu. dipterocarpi Mu. laterale ‘ Mycoleptodiscus endophyticus Mycoleptodiscus suttonii Corynespora cassiicola Dothidea sambuci Dyfrolomyces tiomanensis Jahnula aquatica J. sangamonensis J. seychellensis
Mu. lithocarpi Table 1 Table Species Dothideomycetes Acrospermum compressum A. gramineum Arxiella dolichandrae J. siamensiae Leptodiscella africana L. rintelii Mu. geniculatum Mu. atromaculans
Mu. coloratum Mu. garethjonesii Mu. zamiae Mu. castanopsis A. terrestris
Muyocopron alcornii M. Hernández-Restrepo et al.: Mycoleptodiscus re-evaluated 207 . (2015) al. et (2013) Xu (2006) study al. Zhang Klaubauf et al. (2014) Klaubauf et al. (2014) Klaubauf et al. (2014) References Zhang et al. (2011) This study Klaubauf et al. (2014) et al. (2009), Woudenberg et al. et al. (2009), Woudenberg et al. (2016) Voglmayr Thongkantha et al. (2009), Luo Schoch et al. (2006) This study De Gruyter et al. (2009), Schoch Schoch (2009), al. et Gruyter De Klaubauf et al. (2014) Hernández-Restrepo et al. (2016a) Hernández-Restrepo et al. et Hernández-Restrepo (2016a) This study This study Crous et al. (2016), this study (2014) al. et Klaubauf et al. (2010), Su Yuan Suetrong et al. (2009) Berbee et al. (1999), Schoch Liu et al. (2015) Klaubauf et al. (2014) Luo & Zhang (2013) Zhang et al. (2011) al. et JF710408 Zhang – Luo et al. (2014) al. et KF689628 Luo – – Zhang et al. (2011) al. et JF710412 Zhang JF710416 MK495976 – – JX134692 DQ677899 MK495977 GU349075 – KX306704
KX306708
MK495978 MK495979 KM009202 JN857963 GU479860 DQ677888 – – JX134700
3 – – – – MK492734 – KU234125 – DQ677953 MK492735 GU371774 – –
–
MK492736 MK492737 – – – DQ677943 – – – KM485078 KM485100 KM485102 JF710434 – KM485158 – JX134720 – – – KM485058 KX306636
KX306640
rpb1 rpb2 tef1 – MK495980 – – KM485046 KJ026706 – – – KM485068 JX134728 – This GenBank accession numbers KM484976 KM484995 KM484997 – MK487730 KM485040 KU234112 DQ341492 DQ678058 MK487731 EU754178 KM484959 KX306571
KX306575
LSU MK487734 KX228330 KJ026705 MK487732 KM484951 GU479799 DQ678049 KP744492 KM484968 JX134686 MK487733 KM484862 KM484880 KM484882 JF414837 JF414834 JF414846 JF710432 – KF689648 KF689638 KF689618 – MK487754 KM484944 et KU234112 JX134666 & (2013), (2017) – MK487755 KY940790 KM484842 KX306501
KX306505
ITS MK487758 KX228279 FJ752606 MK487756 KM009166 GU479799 AF071345 KP744449 KM484852 JF414843 JF414892 JF710437 – JX134674 MK487757
: partial RNA polymerase largest subunit gene; tef1 : partial translation elongation II factor 1-alpha gene. Newly generated sequences are in bold partial RNA & rpb2 :
CBS 141031 AFTOL-ID 1300 AFTOL-ID ATCC 18104 ATCC CPC 26033
Other collections FMR 12415 CPC 27552 CPC R-5-6-1 AFTOL-ID 934 AFTOL-ID JK5528S ATCC 200212, IMI 353435, ATCC CBS 141032
T
T T
T T T T T
T T T
T T
T
2 CBS 252.34 MFLUCC 11 0390 MFLUCC 11 BR0029‡ CR0024‡ CBS 609.75 M48‡ M23‡ IMI 159038 CBS 231.53 CBS 100519 L82‡ 22848 ATCC CBS 125232 CBS 117.83 17195b BRIP CBS 116.29 CBS 109410 Strains CBS 141385
CPC 26045 CPC
CBS 117849 CBS 141320 JK 5456A CBS 125863 CBS 714.68 BRIP 17195a BRIP M35‡ CBS 138107 var. var. var. var. sp. graminis graminis
Magnaporthe grisea
Gaeumannomyces cylindrosporus Magnaporthe poae Magnaporthe poae Mycoleptodiscus sphaericus Leptodiscus terrestris Mycoleptodiscus terrestris Gaeumannomyces Mycoleptodiscus affinis
Old names Gaeumannomyces graminis Gaeumannomyces graminis Gaeumannomyces medullaris CM12m9 Harpophora oryzae
Gaeumannomyces incrustans
. bolditalic
indicate ex-type strains. T
1
ATCC: American Type Culture Collection, Virginia, USA; BRIP: Queensland Plant Pathology Herbarium, Brisbane, Australia; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands; CPC: Culture collection of Pedro Crous, housed at Westerdijk Fungal Biodiversity Westerdijk Pedro Crous, housed at The Netherlands; CPC: Culture collection of Utrecht, Fungal Biodiversity Institute, Westerdijk Australia; CBS: Queensland Plant Pathology Herbarium, Brisbane, BRIP: USA; Culture Collection, Virginia, Type American ATCC: Thailand; MUCL: Mycothèque de l’Université catholique UK; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Ria, Agriculture, Ottawa, Ontario, Canada; IMI: International Mycological Institute, Kew, Institute; DAOM: National Mycological Herbarium, Department of R, SS) Antonio, USA; ‡ for other codes (A, BR, CR, JK, L, M, NTOU, Health Science Center at San Texas Laboratory of the University of Testing Auxiliadora Cavalcanti, Recife, Brazil; UTHSC: Fungus de Louvain, Louvain-la-Neuve, Belgium; URM: Culture collection Prof. Maria see References. New species are in gene operon; rpb1 internal transcribed spacers and intervening the nrRNA ITS: 5.8S nrDNA; LSU: partial large subunit (28S) of Nakataea oryzae Neogaeumannomyces bambusicola Pyricularia grisea
Slopeiomyces cylindrosporus Ma. poae Ma. rhizophila
3 Table 1 (cont.) Table Species M. terrestris Neomycoleptodiscus venezuelense Stigmatodiscus enigmaticus Buergenerula spartinae Bussabanomyces longisporus solaniterrestris F. 1 2 Sydowia polyspora Sordariomycetes Neocamarosporium betae Gaeumannomyces graminis
Kohlmeyeriopsis medullaris Pseudophialophora eragrostis Paramycoleptodiscus albizziae Saccardoella rhizophorae Falciphoriella oryzae Stemphylium botryosum Omnidemptus affinis Magnaporthiopsis incrustans O. graminis 208 Persoonia – Volume 42, 2019
2016a). No asexual morph has ever been described for any the impact of M. disciformis in nutrient cycling in the leaf litter Muyocopron species (Spegazzini 1881, Wu et al. 2011, Mapook decomposition in Brazil. et al. 2016a). The aim of the present study is to clarify the taxonomy and Gerdemann (1953), when introducing Mycoleptodiscus (as phylogeny of Mycoleptodiscus species within Ascomycota. Leptodiscus), demonstrated M. terrestris to be a pathogen of For this purpose, we used a set of strains of Mycoleptodiscus herbaceous Fabaceae with economic interest, such as Glycine, species isolated from clinical and plant specimens, including Lespedeza, Lotus, Medicago, Melilotus, Pisum, and Trifolium the available ex-type strains, and performed the multi-locus in the USA. Other Mycoleptodiscus species have also been analyses of ITS rDNA, LSU, rpb1, rpb2 and tef1 sequences. reported to cause diseases of economically important plants, such as Alloteropsis, Carpobrotus, Cattleya, Dianella, Panicum, MATERIALS AND METHODS and Stypandra in Australia (Sutton & Alcorn 1985, 1990, Alcorn 1994, Cannon & Alcorn 1994), Eucalyptus, Garcinia, and Vanilla Strains and morphological analysis in Brazil (Sutton & Hodges 1976, Bezerra & Ram 1986, Paim A total of 30 strains were examined (Table 1). Specimens of et al. 2012), Piper in the Dominican Republic (Watanabe et al. Mycoleptodiscus species, including holotypes and ex-type 1997), Ficus in Peru (Matsushima 1993), Arecaceae in Taiwan strains, were obtained from the Westerdijk Fungal Biodiversity (Matsushima 1987), Fabaceae (including Lotus) and Zamia in Institute (CBS, The Netherlands), the Fungus Testing Labora- the USA (Ostazeski 1967, Sutton 1973, Vanev 1983). They tory of the University of Texas Health Science Center at San have also occurred on several plant species in Brunei, Cuba, Antonio (UTHSCSA, USA), the Queensland Plant Pathology India, New Zealand, and Nigeria (Sutton & Hodges 1976, Sut- Herbarium (BRIP, Australia), the Kew Royal Botanic Gardens ton & Alcorn 1990). Mycoleptodiscus species also recorded as (IMI, England), and the Mycothèque of the UCL (BCCM/MUCL, putative pathogens of symptomatic tropical forest seedlings in Belgium). Panama (Spear 2017), and reported on dead leaves of Frey cinetia in Australia and the Philippines (Whitton et al. 2012). Fresh specimens were collected in Brazil and Spain. The Bra- zilian specimens were isolated as endophytes from Opuntia Although Mycoleptodiscus species have been widely reported ficus-indica and Poincianella pyramidalis growing in a tropical as plant pathogens, some have been isolated as endophytes dry forest. The Spanish specimen was collected in Navarra, from Chamaecyparis thyoides (Bills & Polishook 1992a, b), Robledal de Orgi natural area, growing on a gramineous plant the aquatic Myriophyllum spicatum in the USA (Shearer 2001), close to a stream. Pure cultures were obtained from the conidia Desmotes incomparabilis in Panama (Martínez-Luis et al. of the fungi transferred onto water agar (WA; Difco agar 5 g, 2011, Ortega et al. 2013), Acer truncatum and Cinnamomum 1 L tap water, pH 6). camphora in China (Sun et al. 2011, He et al. 2012), Borreria verticillata and Opuntia ficus-indica in Brazil (Andrioli et al. Strains were sub-cultured on malt extract agar (MEA; 40 g malt 2012, Bezerra et al. 2012), and Freycinetia sp. in Thailand extract, 15 g agar, 1 L distilled water) and oatmeal agar (OA, (Tibpromma et al. 2018). Mycoleptodiscus terrestris has also filtered oat flakes, 20 g agar, 1 L distilled water), and incubated been isolated as an endophyte from aquatic submersed macro at 25 °C under daylight conditions for 1–3 wk; UV light condi- tions were used for some isolates to induce sporulation. After phytes in New Zealand (Hofstra et al. 2009, 2012). 1–2 wk of incubation, the colony diameters were measured and The clinical importance of Mycoleptodiscus was first associated the colony morphologies described. Colony colours on the sur- with a subcutaneous infection (phaeohyphomycosis) in the knee face and reverse of inoculated media were assessed according of a male with Wegener’s granulomatosis and immunodeficiency to the colour charts of Rayner (1970). Micro-morphological de- in South Carolina (USA) (Padhye et al. 1995) and in a liver scriptions and measurements of relevant features were carried transplant patient with human immunodeficiency virus and out from fungal structures and herbarium specimens mounted in hepatitis C co-infection (Garrison et al. 2008). The infection clear lactic acid 90 % v/v. Observations and photomicrographs caused by Mycoleptodiscus was also reported from a mycotic were made with a Nikon SMZ1500 dissecting microscope and arthritis of the knee in a healthy Canadian male (Dewar & Sigler with a Nikon eclipse Ni compound microscope, using a DS- 2010). In New Zealand, Koo et al. (2012) reported an associa- Ri2 digital camera (Nikon, Tokyo, Japan) and NIS-Elements tion with Mycoleptodiscus from progressive necrotizing fungal imaging software v. 4.20. Strains and fungarium materials cellulitis and myositis in the leg of a patient with glioblastoma were deposited at the CBS, BRIP, or at the culture collection of multiforme. Domesticated animals were also reported with Prof. Maria Auxiliadora Cavalcanti from the Federal University infections associated with Mycoleptodiscus species, such as a of Pernambuco (URM, Recife, Brazil). Taxonomic information subcutaneous infection in a cat in Australia (Hull et al. 1997), and nomenclature for new species were deposited in MycoBank and in an immunosuppressed dog in the USA (Metry et al. 2010). (www.MycoBank.org). The clinical importance of Mycoleptodiscus species, mainly M. indicus, was discussed by De Hoog et al. (2000). DNA isolation, amplification, sequence alignment and As scientific research has focused on the discovery of novel phylogenetic analysis microorganisms for biotechnology purposes, some studies Genomic DNA was extracted from fungal colonies growing on have outlined the potential of Mycoleptodiscus. Martínez-Luis MEA using the Wizard® Genomic DNA purification kit (Pro- et al. (2011) demonstrated the anti-parasitic ability of a Myco mega, Madison, USA), according to the manufacturer’s proto leptodiscus sp. isolated as an endophyte from the leaves of cols. Procedures for amplifying and sequencing the nuclear D. incomparabilis. Other studies have established the ability of rDNA, ITS1-5.8S-ITS2 (ITS) and ± 900 bp of the large subunit M. terrestris as a biological control of aquatic plants (Verma & (LSU), was performed as described in Hernández-Restrepo et Charudattan 1993, Shearer & Jackson 2006, Nelson & Shearer al. (2016b). Part of the largest and second largest subunit of 2008). Ortega et al. (2013) showed compounds produced by the RNA polymerase II gene (rpb1 and rpb2) was amplified and Mycoleptodiscus strains could inhibit the growth of cancer cells sequenced as described in Hernández-Restrepo et al. (2016b) in vitro. Furthermore, interesting compounds were identified and Klaubauf et al. (2014), respectively. Translation elongation and isolated from M. indicus, namely eugenitin, four known factor 1-α gene (tef1), corresponding to section 983–1567 bp, polyketides, and three new azaphilones, named mycoleptones was amplified and sequenced as described in Rehner & Buckley A–C (Andrioli et al. 2012, 2014). Grandi & Silva (2010) studied (2005). Consensus sequences were assembled in SeqMan Pro M. Hernández-Restrepo et al.: Mycoleptodiscus re-evaluated 209
(DNASTAR, Madison, WI, USA). The dataset for each gene four-loci dataset were analysed by Maximum Likelihood (ML) was aligned using MAFFT v. 7 (Katoh & Standley 2013), using using the RAxML HPC BlackBox v. 8.2.10 (Stamatakis 2014) the defaults settings and adjusted by hand in MEGA v. 6.06 online server of the Cipres Science gateway portal (Miller et al. (Tamura et al. 2013). 2012). The multi-locus datasets were combined using Sequence BLASTn searches using ITS and LSU sequences were carried Matrix v. 1.8 (Vaidya et al. 2011). A Markov Chain Monte Carlo out and sequences of related species, belonging to Dothideo (MCMC) algorithm was used to generate phylogenetic trees with mycetes and Sordariomycetes, were obtained from GenBank Bayesian probabilities from the concatenated four-locus dataset and listed in Table 1. Two multi-locus phylogenetic analyses were using MrBayes v. 3.2.6 (Ronquist et al. 2012). The best model carried out. The first one for Dothideomycetes was based on a of nucleotide substitution for each locus was determined using concatenated alignment of ITS, LSU, rpb2, and tef1. Another MrModeltest v. 2.3 (Nylander 2004). Confident branch support phylogenetic analysis for Magnaporthales (Sordariomycetes) was defined as bootstrap values (BS) ≥ 70 % from a ML search was based on a concatenated alignment of ITS, LSU, rpb1, and with 1 000 replicates and posterior probabilities (PP) ≥ 0.95. tef1. Individual alignment of each locus and the concatenated The sequences generated during this study and the alignments
IMI 324533T Mycoleptodiscus u ilateralis CBS 145316 Mycoleptodiscus sp. BRIP 16247T Mycoleptodiscus lateralis CBS 145310 Mycoleptodiscus sp. 100/0.99 CBS 127677 ‘Mycoleptodiscus i dicus’ FMR 13797 Mycoleptodiscus sp. URM 7802 Mycoleptodiscus sp. URM 7801 Mycoleptodiscus sp. Muyocopron laterale 100/0.99 CBS 145312 Mycoleptodiscus sp. comb. nov. CBS 145311 Mycoleptodiscus sp. 100/0.99 CBS 145309 Mycoleptodiscus sp. CBS 145314 Mycoleptodiscus sp. Muyocopron 89/0.99 100/0.99 CBS 145313 Mycoleptodiscus sp. CBS 145315 Mycoleptodiscus sp. 100/0.99 CBS 141033 Mycoleptodiscus variabilis 96/0.99 CBS 719.95T Mycoleptodiscus variabilis 93/0.98 CBS 720.95T Mycoleptodiscus coloratus Mu. coloratum comb. nov. T 78/0.95 BRIP 43897a Mycoleptodiscus sp. Mu. alcornii sp. nov. 100/0.99 MFLUCC 162664a Muyocopro gareth o esii 100/0.99 MFLUCC 14-1103 Muyocopro dipterocarpi CBS 702.71 Mycoleptodiscus sp. 99/0.99 Mu. zamiae sp. nov. CBS 703.71T Mycoleptodiscus sp. 100/0.97 CBS 721.95T Mycoleptodiscus ge iculatus Mu. geniculatum comb. nov. 100/0.98 MUCL 34983T Mycoleptodiscus atromacula s Mu. atromaculans comb. nov. 100/0.98 MFLUCC 10-0041 Muyocopro lithocarpi M O O ONA S MFLUCC 14-1106 Muyocopro lithocarpi MFLUCC 14-1108 Muyocopro casta opsis 100/0.99 IMI 159038T Mycoleptodiscus sphaericus 100/0.99 Mycoleptodiscus terrestris CBS 231.53T Mycoleptodiscus terrestris Mycoleptodiscus 100/0.99 99/0.96 CBS 141030 ‘Mycoleptodiscus terrestris’ M. suttonii sp. nov. CBS 276.72T ‘Mycoleptodiscus terrestris’ 71/0.98 MFLUCC 17-0545T ‘Mycoleptodiscus e dophyticus’ -/0.98 CBS 100519T Neomycoleptodiscus venezuelense gen. sp. nov. 88/0.91 BCC 68252T Neocochlearomyces chromolae ae CBS 141320T Paramycoleptodiscus albi iae 100/0.99 CBS 144927T Leptodiscella ri telii 100/0.99 CBS 400.65T Leptodiscella africa a 91/0.95 CBS 268.65T Arxiella terrestris 100/0.99 CBS 138853T Arxiella dolicha drae 100/0.98 100/0.99 L82 Stigmatodiscus e igmaticus CBS 136918 Asterodiscus tamaricis ST MATOD S A S 100/0.97 M151 Acrospermum compressum 100/0.97 M152 Acrospermum grami eum A OS MA S 100/0.99 CBS 109410 Neocamarosporium betae 100/0.98 100/0.99 CBS 714.68 Pleospora herbarum OS O A S CBS 100822 Cory espora cassiicola 100/0.98 CBS 116.29 Sydowia polyspora DAOM 231303 Dothidea sambuci DOT D A S R68 1 ah ula a uatica SS81 02 ah ula siame siae 100/0.98 A N A S A402 1B ah ula sa gamo e sis 100/0.99 SS2113 ah ula seychelle sis 0.2 Fig. 1 RAxML phylogram obtained from the combined ITS, LSU, rpb2, and tef1 sequences of Dothideomycetes members. The tree was rooted to Jahnulales. Taxonomic novelties described in this study are shown in bold. RAxML bootstrap support (BS) values ≥ 70 % and Bayesian posterior probability (PP) scores ≥ 0.95 are shown at the nodes. GenBank accession numbers are indicated in Table 1. T indicates ex-type. 210 Persoonia – Volume 42, 2019 used in the phylogenetic analyses were deposited in GenBank ‘M. terrestris’, was phylogenetically distant and morphologically (Table 1) and TreeBASE (submission number 23523), respec- different from M. terrestris s.str. and formed a subclade with tively. ‘M. endophyticus’ (71/0.98) and Neocochlearomyces chromo laenae (56/0.98), and is therefore proposed here as Neomyco RESULTS leptodiscus venezuelense gen. & sp. nov. A second clade (100/ 0.97), including M. atromaculans, M. coloratus, M. genicula DNA phylogeny tus, ‘M. indicus’, M. lateralis, M. unilateralis, M. variabilis, and numerous unidentified Mycoleptodiscus strains, was placed in BLASTn searches revealed that the ITS and LSU sequences of M. atromaculans, M. coloratus, M. geniculatus, ‘M. indi a monophyletic lineage together with species of Muyocopron. cus’, M. lateralis, M. sphaericus, M. terrestris, M. unilateralis, Furthermore, it is of note that a strain of ‘M. indicus’ CBS and M. variabilis were similar to sequences of members of 127677 and the ex-type strains of M. lateralis, M. unilateralis, Muyocopronales (Dothideomycetes). While M. affinis and the and M. variabilis were grouped in the same clade (89/0.99). strain CBS 138107, were similar to Magnaporthales (Sordario Our analysis revealed two undescribed Muyocopron species mycetes). among the specimens studied, proposed here as Mu. alcornii sp. nov. (BRIP 43897) and Mu. zamiae sp. nov. (CBS 702.71, The first concatenated matrix contained a total of 3 364 charac- CBS 703.71). ters (761 for ITS, 846 for LSU, 819 for rpb2, and 938 for tef1). For Bayesian analysis, MrModel test proposed a GTR+I+G The Magnaporthales concatenated matrix contained a total of model for all the loci. The consensus tree obtained from the 2 882 characters (589 for ITS, 752 for LSU, 618 for rpb1, and Bayesian analysis agreed with the topology of the best scor- 923 for tef1). For Bayesian analysis, the MrModel test proposed ing ML tree (Fig. 1). In the phylogenetic tree, Mycoleptodiscus a GTR+I+G model for ITS and LSU and a GTR+G for rpb1 and species were scattered into two well-supported clades in Muyo tef1. The consensus tree obtained from that analysis agreed copronales. The Mycoleptodiscus clade (100 ML BS/0.99 PP) with the topology of the best scoring ML tree (Fig. 2). In the phy- includes the ex-type sequences of M. sphaericus and M. ter logenetic tree, M. affinis CBS 141031, O. affinis ATCC 200212 restris. The analysis also revealed the existence of a cryptic and CBS 138107 formed an independent clade (100/1.0) in species in the current concept of M. terrestris, represented the Magnaporthaceae. Omnidemptus is circumscribed and by two strains, CBS 276.72 and CBS 141030, and for which M. affinis is formally synonymised under O. affinis, and the M. suttonii sp. nov. is proposed as a new species in the tax- strain CBS 138107 is introduced as Omnidemptus graminis sp. onomy section. The strain CBS 100519, formerly identified as nov. based on its phylogenetic and morphological differences.
Buerge erula sparti ae ATCC 22848
96/0.99 Falciphoriella sola iterrestris CBS 117.83T
Falciphora ory ae CBS 125863T