Journal of Science / Vol 5 / Issue 7 / 2015 / 489-495
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Cyclotides Evolve
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Pharmacy 218 Cyclotides evolve Studies on their natural distribution, structural diversity, and activity SUNGKYU PARK ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6192 ISBN 978-91-554-9604-3 UPPSALA urn:nbn:se:uu:diva-292668 2016 Dissertation presented at Uppsala University to be publicly examined in B/C4:301, BMC, Husargatan 3, Uppsala, Friday, 10 June 2016 at 09:00 for the degree of Doctor of Philosophy (Faculty of Pharmacy). The examination will be conducted in English. Faculty examiner: Professor Mohamed Marahiel (Philipps-Universität Marburg). Abstract Park, S. 2016. Cyclotides evolve. Studies on their natural distribution, structural diversity, and activity. Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Pharmacy 218. 71 pp. Uppsala: Acta Universitatis Upsaliensis. ISBN 978-91-554-9604-3. The cyclotides are a family of naturally occurring peptides characterized by cyclic cystine knot (CCK) structural motif, which comprises a cyclic head-to-tail backbone featuring six conserved cysteine residues that form three disulfide bonds. This unique structural motif makes cyclotides exceptionally resistant to chemical, thermal and enzymatic degradation. They also exhibit a wide range of biological activities including insecticidal, cytotoxic, anti-HIV and antimicrobial effects. The cyclotides found in plants exhibit considerable sequence and structural diversity, which can be linked to their evolutionary history and that of their host plants. To clarify the evolutionary link between sequence diversity and the distribution of individual cyclotides across the genus Viola, selected known cyclotides were classified using signature sequences within their precursor proteins. By mapping the classified sequences onto the phylogenetic system of Viola, we traced the flow of cyclotide genes over evolutionary history and were able to estimate the prevalence of cyclotides in this genus. -
Dispersion of Vascular Plant in Mt. Huiyangsan, Korea
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Journal of Korean Nature Vol. 3, No. 1 1-10, 2010 Dispersion of Vascular Plant in Mt. Huiyangsan, Korea Hyun-Tak Shin1, Sung-Tae Yoo2, Byung-Do Kim2, and Myung-Hoon YI3* 1Gyeongsangnam-do Forest Environment Research Institute, Jinju 660-871, Korea 2Daegu Arboretum 284 Daegok-Dong Dalse-Gu Daegu 704-310, Korea 3Department of Landscape Architecture, Graduate School, Yeungnam University, Gyeongsan 712-749, Korea Abstract: We surveyed that vascular plants can be classified into 90 families and 240 genus, 336 species, 69 variants, 22 forms, 3 subspecies, total 430 taxa. Dicotyledon plant is 80.9%, monocotyledon plant is 9.8%, Pteridophyta is 8.1%, Gymnosermae is 1.2% among the whole plant family. Rare and endangered plants are Crypsinus hastatus, Lilium distichum, Viola albida, Rhododendron micranthum, totalling four species. Endemic plants are Carex okamotoi, Salix koriyanagi for. koriyanagi, Clematis trichotoma, Thalictrum actaefolium var. brevistylum, Galium trachyspermum, Asperula lasiantha, Weigela subsessilis, Adenophora verticillata var. hirsuta, Aster koraiensis, Cirsium chanroenicum and Saussurea seoulensis total 11 taxa. Specialized plants are 20 classification for I class, 7 classifications for the II class, 7 classifications for the III class, 2 classification for the IV class, and 1 classification for the V class, total 84 taxa. Naturalized plants specified in this study are 10 types but Naturalization rate is not high compared to the area of BaekDu-DaeGan. This survey area is focused on the center of BaekDu- DaeGan, and it has been affected by excessive investigations and this area has been preserved as Buddhist temples' woods. -
Botanica Pacifica
Russian Academy of Sciences, Far Eastern Branch Botanical Garden-Institute botanica pacifica A journal of plant science and conservation Volume 9, No. 1 2020 VLADIVOSTOK 2020 Botanica Pacifica. A journal of plant science and conservation. 2020. 9(1): 3–52 DOI: 10.17581/bp.2020.09113 Revision of the genus Viola L. (Violaceae) in the Russian Far East with notes on adjacent territories Marc Espeut Marc Espeut ABSTRACT e-mail: [email protected] This study proposes a revision of the genus Viola L. (Violaceae) in the Russian 34, rue de l'Agriculture, 66500 Prades, Far East and adjacent regions. It is based on the taxonomic work that Becker con- France ducted on the Asian Viola (1915–1928), but also on Clausen's cytotaxonomic stud- ies (1926–1964) that laid the foundations of the genus' phylogeny. Chromosome counts, as well as phylogenetic analyses, have allowed to specify the infrageneric taxonomy and establish relationships between some taxa of American or Asian ad- Manuscript received: 09.03.2020 jacent territories. A systematic treatment based on the Biological Species Concept, Review completed: 22.04.2020 associated with genetic, cytotaxonomic, and biogeographic data, allowed many sys- Accepted for publication: 02.05.2020 tematic and nomenclatural changes, at different levels: infrageneric, specific and Published online: 07.05.2020 infraspecific. This study shows the remarkable role of the Russian Far East for the conservation and differentiation of the genus Viola species, and probably for the whole flora of the Holarctic Kingdom. Keywords: Violaceae, Viola, Russian Far East, typifications, taxonomic novelties, no- TABLE OF CONTENTS menclatural novelties Introduction .......................................................... -
Developing Biodiverse Green Roofs for Japan: Arthropod and Colonizer Plant Diversity on Harappa and Biotope Roofs
20182018 Green RoofsUrban and Naturalist Urban Biodiversity SpecialSpecial Issue No. Issue 1:16–38 No. 1 A. Nagase, Y. Yamada, T. Aoki, and M. Nomura URBAN NATURALIST Developing Biodiverse Green Roofs for Japan: Arthropod and Colonizer Plant Diversity on Harappa and Biotope Roofs Ayako Nagase1,*, Yoriyuki Yamada2, Tadataka Aoki2, and Masashi Nomura3 Abstract - Urban biodiversity is an important ecological goal that drives green-roof in- stallation. We studied 2 kinds of green roofs designed to optimize biodiversity benefits: the Harappa (extensive) roof and the Biotope (intensive) roof. The Harappa roof mimics vacant-lot vegetation. It is relatively inexpensive, is made from recycled materials, and features community participation in the processes of design, construction, and mainte- nance. The Biotope roof includes mainly native and host plant species for arthropods, as well as water features and stones to create a wide range of habitats. This study is the first to showcase the Harappa roof and to compare biodiversity on Harappa and Biotope roofs. Arthropod species richness was significantly greater on the Biotope roof. The Harappa roof had dynamic seasonal changes in vegetation and mainly provided habitats for grassland fauna. In contrast, the Biotope roof provided stable habitats for various arthropods. Herein, we outline a set of testable hypotheses for future comparison of these different types of green roofs aimed at supporting urban biodiversity. Introduction Rapid urban growth and associated anthropogenic environmental change have been identified as major threats to biodiversity at a global scale (Grimm et al. 2008, Güneralp and Seto 2013). Green roofs can partially compensate for the loss of green areas by replacing impervious rooftop surfaces and thus, contribute to urban biodiversity (Brenneisen 2006). -
Plant Communities Dominated by Salix Gracilistyla in Korean Peninsula and Japan
CMYK Biologia, Bratislava, 61/1: 63—70, 2006 63 Plant communities dominated by Salix gracilistyla in Korean Peninsula and Japan Ivan Jarolímek1 &JiříKolbek2 1Institute of Botany, Slovak Academy of Sciences, Dúbravská cesta 14,SK–84523 Bratislava, Slovakia; e-mail: [email protected] 2Institute of Botany, Academy of Sciences of the Czech Republic, CZ–25243 Průhonice, Czech Republic; e-mail: [email protected] Abstract: Riverside vegetation dominated by Salix gracilistyla was analysed. In total, 77 phytocoenological relevés from Japan and both Korean Republics were compared. Based on 20 own relevés from Kumgang-san Mts (North Korea) a new association Artemisio feddei-Salicetum gracilistylae was described. It occupies alluvia of rivers and streams flooded for several times yearly. This species-rich community differs from the most similar, but species-poor association Salicetum gracilistylae Minamikawa 1963, described from Japan and known also from South Korea by numerous differential taxa. Key words: North-East Asia, riverside vegetation, Salicion gracilistylae, vegetation classification Introduction steep, narrow and covered by large blocks of boulders, almost without vegetation. Only small stands of Phrag- In North Korea, phytocoenological research of veg- mites japonica belonging to species-poor bank vegeta- etation was performed in the years 1986 to 1990. tion overgrow it. Stream falls down toward the east Along with forests, pioneer vegetation in the rock fis- foothills of mountains and it flows across about ten kilo- sures and synanthropic communities (Neuhäusl & metres wide lowland to the East (Japanese) Sea near Neuhäuslová, 1994; Kolbek & Sádlo, 1996; Kol- the Samilpo Lake. bek et al., 1997, 2003; Sádlo & Kolbek, 1997; Kol- On the riversides of the Namgong river and its isles bek et al., 1998; Kolbek et al. -
Flora and Vegetation Characteristics of the Natural Habitat of the Endangered Plant Pterygopleurum Neurophyllum
diversity Article Flora and Vegetation Characteristics of the Natural Habitat of the Endangered Plant Pterygopleurum neurophyllum Hwan Joon Park 1,2,*, Seongjun Kim 1,* , Chang Woo Lee 1, Nam Young Kim 1, Jung Eun Hwang 1, Jiae An 1, Hyeong Bin Park 1, Pyoung Beom Kim 3 and Byoung-Doo Lee 1 1 Division of Restoration Research, Research Center for Endangered Species, National Institute of Ecology, Yeongyang 36531, Korea; [email protected] (C.W.L.); [email protected] (N.Y.K.); [email protected] (J.E.H.); [email protected] (J.A.); [email protected] (H.B.P.); [email protected] (B.-D.L.) 2 Department of Ecology Landscape Architecture-Design, Jeonbuk University, Iksan 54596, Korea 3 Wetland Center, National Institute of Ecology, Changnyeong 50303, Korea; [email protected] * Correspondence: [email protected] (H.J.P.); [email protected] (S.K.) Abstract: This study analyzed the flora, life form, and vegetation of the Nakdong River wetland. Vegetation analysis was performed on 37 plots using the phytosociological method of the Zürich- Montpellier School. PCA analysis was conducted by using the vegetation data (ground cover of class; 1~9) of 37 plots surveyed by phytosociological method. PCA (Principal Component Analysis) was used to statistically analyze the objectivity of the community classification and the character species. The traditional classification and mathematical statistic methods were used. A total of 82 taxa belonging to 28 families, 65 genera, 72 species, 2 subspecies, and 8 varieties were present in the vegetation of the survey area. The life form was analyzed to be the Th-R5-D4-e type. -
Plant Biotechnol. 27(4): 317-324 (2010)
Plant Biotechnology 27, 317–324 (2010) Original Paper Molecular and functional characterization of novel furofuran- class lignan glucosyltransferases from Forsythia Eiichiro Ono1,*, Hyun Jung Kim2, Jun Murata2, Kinuyo Morimoto2, Atsushi Okazawa3, Akio Kobayashi3, Toshiaki Umezawa4, Honoo Satake2 1 Core Research Group, R&D Planning Division, Suntory Holdings Ltd., Suntory Research Center, Mishima, Osaka 618-8503, Japan; 2 Suntory Institute for Bioorganic Research, Mishima, Osaka, 618-8503 Japan; 3 Department of Biotechnology, Graduate School of Engineering, Osaka University, Suita, Osaka 565-0871, Japan; 4 Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto 611-0011, Japan * E-mail: [email protected] Tel: ϩ81-75-962-2244 Fax: ϩ81-75-962-3791 Received February 23, 2010; accepted April 8, 2010 (Edited by T. Aoki) Abstract Lignan is a large class of plant secondary metabolites, which has long attracted pharmacological interest because of its anti-tumor and estrogenic activities. Forsythia plants are known to produce a wide variety of lignans, such as (Ϫ)-matairesinol, (Ϫ)-secoisolariciresinol, (ϩ)-pinoresinol, and (ϩ)-phillygenin. The majority of such lignans are accumulated in glucoside forms. However, their glucosylation mechanisms largely remain to be elucidated. Here we describe the sequence, enzymatic activities, and gene expression profiles of UDP-sugar dependent-glycosyltransferases (UGT) from Forsythia koreana through a reverse-genetic approach. A Forsythia UGT, UGT71A18 protein, expressed in E. coli, preferentially glucosylated furofuran-class lignans, including (ϩ)-pinoreisnol, (ϩ)-epipinoreisnol, and (ϩ)- phylligenin. Moroeover, the recombinant UGT71A18 exhibited specificity to UDP-glucose as a glycosyl donor. Gene expression analysis revealed that UGT71A18 is expressed predominantly in leaves and the suspension cell culture of F. -
Compilation of the Literature Reports for the Screening of Vascular Plants, Algae, Fungi and Non- Arthropod Invertebrates for the Presence of Ecdysteroids
COMPILATION OF THE LITERATURE REPORTS FOR THE SCREENING OF VASCULAR PLANTS, ALGAE, FUNGI AND NON- ARTHROPOD INVERTEBRATES FOR THE PRESENCE OF ECDYSTEROIDS Compiled by Laurie Dinan and René Lafont Biophytis, Sorbonne Université, Campus P&M Curie, 4 Place Jussieu, F-75252 Paris Cedex 05, France. Version 6: 24/10/2019 Important notice: This database has been designed as a tool to help the scientific community in research on ecdysteroids. The authors wish it to be an evolving system and would encourage other researchers to submit new data, additional publications, proposals for modifications or comments to the authors for inclusion. All new material will be referenced to its contributor. Reproduction of the material in this database in its entirety is not permitted. Reproduction of parts of the database is only permitted under the following conditions: • reproduction is for personal use, for teaching and research, but not for distribution to others • reproduction is not for commercial use • the origin of the material is indicated in the reproduction • we should be notified in advance to allow us to document that the reproduction is being made Where data are reproduced in published texts, they should be acknowledged by the reference: Lafont R., Harmatha J., Marion-Poll F., Dinan L., Wilson I.D.: The Ecdysone Handbook, 3rd edition, on-line, http://ecdybase.org Illustrations may not under any circumstances be used in published texts, commercial or otherwise, without previous written permission of the author(s). Please notify Laurie Dinan ([email protected]) of any errors or additional literature sources. © 2007: Laurence Dinan and René Lafont CONTENTS 1. -
New and Noteworthy Vascular Plant Records for Alabama
Barger, T.W., A. Cressler, B. Finzel, A. Highland, W.M. Knapp, F. Nation, A.R. Schotz, D.D. Spaulding, and C.T. Taylor. New and noteworthy vascular plant records for Alabama. Phytoneuron 2019-16: 1–7. Published 25 April 2019. ISSN 2153 733X NEW AND NOTEWORTHY VASCULAR PLANT RECORDS FOR ALABAMA T. WAYNE BARGER* Alabama Department of Conservation and Natural Resources State Lands Division, Natural Heritage Section Montgomery, Alabama 36130 [email protected] *Corresponding Author ALAN CRESSLER 1790 Pennington Place SE Atlanta, Georgia 30316 [email protected] BRIAN FINZEL St. John Paul II Catholic High School 7301 Old Madison Pike Huntsville, Alabama 35806 [email protected] AMY HIGHLAND Mt. Cuba Center 3120 Barley Mill Road Hockessin, Delaware 19707 [email protected] WESLEY M. KNAPP North Carolina Natural Heritage Program 176 Riceville Road Asheville, North Carolina 28805 [email protected] FRED NATION Weeks Bay Reserve 11300 U. S. Hwy 98 Fairhope, Alabama 36532 [email protected] ALFRED R. SCHOTZ Auburn University Museum of Natural History Alabama Natural Heritage Program Auburn, Alabama 36849 [email protected] DANIEL D. SPAULDING Anniston Museum of Natural History 800 Museum Drive/P.O. Box 1587 Anniston, Alabama 36202 [email protected] CHRIS T. TAYLOR 679 Cauthen Court Auburn, Alabama 36830 [email protected] 2 Barger et al.: Alabama records ABSTRACT Ten non-native species (Achyranthes japonica var. hachijoensis, Atocion armeria, Citrullus amarus, Cuscuta japonica, Cymbalaria muralis, Dioscorea alata, Grindelia ciliata, Odontonema cuspidatum, Paederia foetida, and Parentucellia viscosa), four native species (Clematis versicolor, Heteranthera multiflora, Pellaea glabella, and Quercus xbeadleii), five historic or uncommon species (Asplenium ruta- muraria var. -
New Invaders of the Northwest, 2Nd Edition
United States TECHNOLOGY Department of Agriculture TRANSFER NEW INVADERS OF THE NORTHWEST Second Edition Rachel Winston, Wendy DesCamp, Jennifer Andreas, Carol Bell Randall, Joseph Milan, and Mark Schwarzländer Forest Health Technology University of Idaho FHTET-2014-12 Enterprise Team Extension December 2014 he Forest Health Technology Enterprise Team (FHTET) was created in T1995 by the Deputy Chief for State and Private Forestry, USDA, Forest Service, to develop and deliver technologies to protect and improve the health of American forests. This book was published by FHTET as part of the technology transfer series. http://www.fs.fed.us/foresthealth/technology/ Cover photos (clockwise from top left): crown vetch (Dan Tenaglia, Missouriplants.com, www.bugwood. org), garden loosestrife (King County NWCB), giant reed (Amy Ferriter, www.bugwood.org), blueweed (H. Zell), English holly (Jürgen Howaldt) The U.S. Department of Agriculture (USDA) prohibits discrimination in all its programs and activities on the basis of race, color, national origin, sex, religion, age, disability, political beliefs, sexual orientation, or marital or family status. (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contact USDA’s TARGET Center at 202-720-2600 (voice and TDD). To file a complaint of discrimination, write USDA, Director, Office of Civil Rights, Room 326-W, Whitten Building, 1400 Independence Avenue, SW, Washington, D.C. 20250-9410, or call 202- 720-5964 (voice and TDD). USDA is an equal opportunity provider and employer. The use of trade, firm, or corporation names in this publication is for the information and convenience of the reader. -
Samenkatalog Graz 2019 End.Pdf
SAMENTAUSCHVERZEICHNIS Index Seminum Seed list Catalogue de graines Botanischer Garten der Karl-Franzens-Universität Graz Ernte / Harvest / Récolte 2019 Herausgegeben von Christian BERG, Kurt MARQUART, Thomas GALIK & Jonathan WILFLING ebgconsortiumindexseminum2012 Institut für Biology, Januar 2020 Botanical Garden, Institute of Biology, Karl-Franzens-Universität Graz 2 Botanischer Garten Institut für Biologie Karl-Franzens-Universität Graz Holteigasse 6 A - 8010 Graz, Austria Fax: ++43-316-380-9883 Email- und Telefonkontakt: [email protected], Tel.: ++43-316-380-5651 [email protected], Tel.: ++43-316-380-5747 Webseite: http://garten.uni-graz.at/ Zitiervorschlag : BERG, C., MARQUART, K., GALIK, T. & Wilfling, J. (2020): Samentauschverzeichnis – Index Seminum – des Botanischen Gartens der Karl-Franzens-Universität Graz, Samenernte 2019. – 44 S., Karl-Franzens-Universität Graz. Personalstand des Botanischen Gartens Graz: Institutsleiter: Univ.-Prof. Dr. Christian STURMBAUER Wissenschaftlicher Gartenleiter: Dr. Christian BERG Technischer Gartenleiter: Jonathan WILFLING, B. Sc. GärtnerInnen: Doris ADAM-LACKNER Viola BONGERS Thomas GALIK Margarete HIDEN Kurt MARQUART Franz STIEBER Ulrike STRAUSSBERGER Monika GABER René MICHALSKI Techn. MitarbeiterInnen: Oliver KROPIWNICKI Martina THALHAMMER Gärtnerlehrlinge: Sophia DAMBRICH (3. Lehrjahr) Wanja WIRTL-MÖLBACH (3. Lehrjahr) Jean KERSCHBAUMER (3. Lehrjahr) 3 Inhaltsverzeichnis / Contents / Table des matières Abkürzungen / List of abbreviations / Abréviations ................................................. -
De Novo Sequencing and Native Mass Spectrometry Reveals Hetero-Association of Dirigent Protein
De novo Sequencing and Native Mass Spectrometry Reveals Hetero-Association of Dirigent Protein Homologs and Potential Interacting Proteins in Forsythia × intermedia Mowei Zhou,1 * Joseph A. Laureanti,2 Callum J. Bell,3 Mi Kwon,4 Qingyan Meng,4 Irina V. Novikova,1 Dennis G. Thomas,5 Carrie D. Nicora,5 Ryan L. Sontag,5 Diana L. Bedgar,4 Isabelle O’Bryon,6 Eric D. Merkley,6 Bojana Ginovska,2 John R. Cort,4,5 Laurence B. Davin, and 4 Norman G. Lewis4 1. Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA 2. Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA 3. National Center for Genome Resources, Santa Fe, New Mexico, USA 4. Institute of Biological Chemistry, Washington State University, Pullman, WA, USA 5. Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA 6. National Security Division, Pacific Northwest National Laboratory, Richland, Washington, USA Corresponding email: [email protected] Abstract: The discovery of dirigent proteins (DPs) and their functions in plant phenol biochemistry was made over two decades ago with Forsythia × intermedia. Stereo-selective, DP-guided, monolignol-derived radical coupling in vitro was then reported to afford the optically active lignan, (+)-pinoresinol from coniferyl alcohol, provided one-electron oxidase/oxidant capacity was present. It later became evident that DPs have several distinct sub-families. In vascular plants, DPs hypothetically function, along with other essential enzymes/proteins (e.g. oxidases), as part of lignin/lignan forming complexes (LFCs). Herein, we used an integrated bottom-up, top-down, and native mass spectrometry approach to detect potential interacting proteins in a DP-enriched solubilized protein fraction from Forsythia × intermedia, via adaptation of our initial report of DP solubilization and purification.