Diversity of the Cryptococcus Neoformans-Cryptococcus Gattii Species Complex Marjan Bovers1, Ferry Hagen1 and Teun Boekhout1,2
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Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
Cryptococcus Gattii Outbreak
The recent Cryptococcus gattii outbreak A deadly pathway… From Trees to Lungs to Brain ryptococcus gattii disease. The route of C has been in the infection is from breathing the news lately, due to a recent airborne organism, which outbreak in the Pacific becomes lodged in the Northwest. This new, more pulmonary tissues. virulent strain is expected to by Jay Hardy, CLS, SM (NRCM) spread further throughout the Symptoms Northwest and Northern California in the coming The pulmonary disease, Jay Hardy is the founder and months. known as cpryptococcosis, president of Hardy Diagnostics. develops slowly. After He began his career in exposure it can take two to microbiology as a Medical Technologist in Santa Barbara, twelve months for symptoms California. to appear, with the usual onset In 1980, he began at six or seven months. manufacturing culture media for the local hospitals. Today, The symptoms include: Hardy Diagnostics is the third largest media manufacturer in the U.S. • Cough that lasts weeks or months To ensure rapid and reliable turn around time, Hardy • Sharp chest pain Figure 1: An India ink stain Diagnostics maintains six • Unexplained shortness of showing the capsule surrounding distribution centers, and breath produces over 3,000 products the C. gattii cells in the yeast form used in clinical and industrial at 1,000X. Photo from Haley/CDC. • Severe headache microbiology laboratories • Confusion throughout the world. The organism is a fungus that • Fever is usually found in the soil • Night sweats www.HardyDiagnostics.com and on trees. It is not spread • Unintended weight loss from human to human or animal to human. -
A Silver Bullet in a Golden Age of Functional Genomics: the Impact of Agrobacterium-Mediated Transformation of Fungi
Idnurm, A. , Bailey, A. M., Cairns, T., Elliott, C., Foster, G., Ianiri, G., & Jeon, J. (2017). A silver bullet in a golden age of functional genomics: the impact of Agrobacterium-mediated transformation of fungi. Fungal Biology and Biotechnology, 4, [4:6]. https://doi.org/10.1186/s40694- 017-0035-0 Publisher's PDF, also known as Version of record License (if available): CC BY Link to published version (if available): 10.1186/s40694-017-0035-0 Link to publication record in Explore Bristol Research PDF-document This is the final published version of the article (version of record). It first appeared online via BMC at https://fungalbiolbiotech.biomedcentral.com/articles/10.1186/s40694-017-0035-0. Please refer to any applicable terms of use of the publisher. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ Idnurm et al. Fungal Biol Biotechnol (2017) 4:6 DOI 10.1186/s40694-017-0035-0 Fungal Biology and Biotechnology REVIEW Open Access A silver bullet in a golden age of functional genomics: the impact of Agrobacterium‑mediated transformation of fungi Alexander Idnurm1* , Andy M. Bailey2, Timothy C. Cairns3, Candace E. Elliott1, Gary D. Foster2, Giuseppe Ianiri4 and Junhyun Jeon5 Abstract The implementation of Agrobacterium tumefaciens as a transformation tool revolutionized approaches to discover and understand gene functions in a large number of fungal species. A. -
Associations Between Cryptococcus Genotypes, Phenotypes, and Clinical Parameters of Human Disease: a Review
Journal of Fungi Review Associations between Cryptococcus Genotypes, Phenotypes, and Clinical Parameters of Human Disease: A Review Marhiah C. Montoya 1,2 , Paul M. Magwene 3 and John R. Perfect 1,2,* 1 Division of Infectious Diseases, Department of Medicine, Duke University, Durham, NC 27710, USA; [email protected] 2 Division of Infectious Diseases, Department of Molecular Genetics and Microbiology, Duke University, Durham, NC 27710, USA 3 Department of Biology, Duke University, Durham, NC 27710, USA; [email protected] * Correspondence: [email protected] Abstract: The genus Cryptococcus contains two primary species complexes that are significant op- portunistic human fungal pathogens: C. neoformans and C. gattii. In humans, cryptococcosis can manifest in many ways, but most often results in either pulmonary or central nervous system disease. Patients with cryptococcosis can display a variety of symptoms on a spectrum of severity because of the interaction between yeast and host. The bulk of our knowledge regarding Cryptococcus and the mechanisms of disease stem from in vitro experiments and in vivo animal models that make a fair attempt, but do not recapitulate the conditions inside the human host. To better understand the dynamics of initiation and progression in cryptococcal disease, it is important to study the genetic and phenotypic differences in the context of human infection to identify the human and fungal risk factors that contribute to pathogenesis and poor clinical outcomes. In this review, we summarize the current understanding of the different clinical presentations and health outcomes that are associated with pathogenicity and virulence of cryptococcal strains with respect to specific Citation: Montoya, M.C.; Magwene, P.M.; Perfect, J.R. -
Zymobiomics Microbial Community DNA Standard II (Log Distribution)
INSTRUCTION MANUAL ZymoBIOMICS™ Microbial Community DNA Standard II (Log Distribution) Catalog No. D6311 Highlights • Log abundance distribution: assess detection limit of as low as DNA of three microbes. • Accurate composition: cross-validated with multiple types of measurements. • Microbiomics QC: ideal for quality control of microbiome measurements Contents Product Contents ...................................................... 1 Product Specifications .............................................. 1 Product Description .................................................. 2 Strain Information ..................................................... 3 Protocol .................................................................... 4 Bioinformatics Analysis Recommendations ........ 4 Ordering Information ................................................. 5 Appendix A: Additional Strain Information ................. 6 Ordering Information and Related Products ............. 7 For Research Use Only Ver. 1.0.3 ZYMO RESEARCH CORP. Phone: (949) 679-1190 ▪ Toll Free: (888) 882-9682 ▪ Fax: (949) 266-9452 ▪ [email protected] ▪ www.zymoresearch.com Page 1 Satisfaction of all Zymo Product Contents Research products is guaranteed. If you are Storage dissatisfied with this product, Product Name D6311 please call 1-888-882-9682. Temperature ZymoBIOMICS™ Microbial Community Note – Integrity of kit 220ng / 20µl -20°C components is guaranteed DNA Standard II (Log Distribution) for up to one year from date of purchase. Product Specifications Source: genomic -
Health and Disease Status in a Threatened Marsupial, the Quokka (Setonix Brachyurus)
Health and disease status in a threatened marsupial, the quokka (Setonix brachyurus) Pedro Martínez-Pérez Veterinarian (Hons), MVS Conservation Medicine This thesis was submitted in fulfilment of the requirements for the degree of Doctor of Philosophy in Wildlife Veterinary Studies, Murdoch University School of Veterinary and Life Sciences Murdoch University Murdoch, Western Australia January 2016 Declaration I declare that this thesis is my own account of my research and contains as its main content, work which has not been previously submitted for a degree at any tertiary educational institution. _______________________________________________ Pedro A. Martínez-Pérez I Abstract Between 1901 and 1931, there were at least six anecdotal records of disease outbreaks in mainland quokkas (Setonix brachyurus) that were associated with mass. This time period pre-dates the arrival of the red fox (Vulpes vulpes). Despite these outbreaks, little or no research has been carried out to establish health and disease baseline data of the fragmented and scattered, extant populations. Epidemiological data was determined for a range of potential pathogens, and established physiological reference intervals of apparently healthy, wild quokkas on Rottnest Island and mainland locations. There were significant differences between Rottnest Island and mainland quokkas. Rottnest Island animals had haemograms with mark evidence of oxidative injury and bone marrow response consistent with a regenerative normocytic hypochromic anaemia. Except alkaline phosphatase (ALP), all blood chemistry analytes where higher in mainland animals, with particular emphasis on creatine kinase (CK), alanine amino transferase (ALT), aspartate amino transferase (AST) and vitamin E. Some other key findings include a widespread presence of a novel herpesvirus (MaHV-6), the recovery of Cryptococcus neoformans var. -
A Silver Bullet in a Golden Age of Functional Genomics: the Impact of Agrobacterium-Mediated Transformation of Fungi
Idnurm et al. Fungal Biol Biotechnol (2017) 4:6 DOI 10.1186/s40694-017-0035-0 Fungal Biology and Biotechnology REVIEW Open Access A silver bullet in a golden age of functional genomics: the impact of Agrobacterium‑mediated transformation of fungi Alexander Idnurm1* , Andy M. Bailey2, Timothy C. Cairns3, Candace E. Elliott1, Gary D. Foster2, Giuseppe Ianiri4 and Junhyun Jeon5 Abstract The implementation of Agrobacterium tumefaciens as a transformation tool revolutionized approaches to discover and understand gene functions in a large number of fungal species. A. tumefaciens mediated transformation (AtMT) is one of the most transformative technologies for research on fungi developed in the last 20 years, a development arguably only surpassed by the impact of genomics. AtMT has been widely applied in forward genetics, whereby generation of strain libraries using random T-DNA insertional mutagenesis, combined with phenotypic screening, has enabled the genetic basis of many processes to be elucidated. Alternatively, AtMT has been fundamental for reverse genet- ics, where mutant isolates are generated with targeted gene deletions or disruptions, enabling gene functional roles to be determined. When combined with concomitant advances in genomics, both forward and reverse approaches using AtMT have enabled complex fungal phenotypes to be dissected at the molecular and genetic level. Addition- ally, in several cases AtMT has paved the way for the development of new species to act as models for specifc areas of fungal biology, particularly in plant pathogenic ascomycetes and in a number of basidiomycete species. Despite its impact, the implementation of AtMT has been uneven in the fungi. This review provides insight into the dynamics of expansion of new research tools into a large research community and across multiple organisms. -
Maternal–Fetal Transmission of Cryptococcus Gattii in Harbor Porpoise
LETTERS Oral Oncul, Yunus Atalay, Maternal–Fetal www.cdc.gov/EID/content/17/2/302- Yalcin Onem, Vedat Turhan, Ali appF.htm). The fi rst stomach chamber Acar, Yavuz Uyar, Transmission of contained two 3.5 cm × 2.5 cm raised, Dilek Y. Caglayik, Sezai Ozkan, Cryptococcus gattii centrally umbilicated ulcers and sev- and Levent Gorenek in Harbor Porpoise eral embedded anisakid nematodes. Author affi liations: Gulhane Military Medi- The uterus was gravid in the right cal Academy Haydarpasa Training Hospi- To the Editor: We report mater- horn with a mid-term fetus. No other tal, Istanbul, Turkey (O. Oncul, Y. Atalay, nal–fetal transmission of Cryptococ- gross lesions were identifi ed. Micro- Y. Onem, V. Turhan, A. Acar, S. Ozkan, L. cus gattii and death in a wild porpoise. scopically, the lung lesions correlated Gorenek); and Refi k Saydam National Pub- Cryptococcus neoformans and C. gat- with granulomatous to pyogranuloma- lic Health Agency, Ankara, Turkey (Y. Uyar, tii are 2 environmental, encapsulated tous infi ltrates, often with a myriad of D.Y. Caglayik) yeasts that cause invasive, potentially yeasts. life-threatening infections in humans The male fetus (length 30 cm, DOI: 10.3201/eid1702.100663 and animals (1). C. neoformans causes weight 2.4 kg), was examined sepa- disease in immunocompromised hosts, rately at a different facility than the References and C. gattii is also pathogenic in im- dam. It appeared grossly normal ex- 1. Tang YW, Li YL, Ye KL, Xu ZY, Ruo munocompetent hosts (2). Since 1999, ternally and was at a gestation of ≈5–6 SL, Fisher-Hoch SP, et al. -
Evolutionary Affinities of Heterobasidiomycetous Yeasts Estimated from 185 and 255 Ribosomal RNA Sequence Divergence
6349 System. Appl. Microbiol. 12, 230-236 (1989) Evolutionary Affinities of Heterobasidiomycetous Yeasts Estimated from 185 and 255 Ribosomal RNA Sequence Divergence 2 2 EVELINE GUEHO\ CLETUS P. KURTZMAN , and STEPHEN W. PETERSON J lnstitut Pasteur, Unite de Mycologie, 75724 Paris Cedex 15, France Northern Regional Research Center, U.S. Department of Agriculture, Peoria, IL 61604, USA Received May 20, 1989 Summary Phylogenetic relationships among heterobasidiomycetous yeasts, including anamorphic and teleomorphic taxa, have been compared from the sequence similarity of small (18S) and large (25S) subunit ribosomal RNA. Species examined were Cystofilobasidium capitatum, Filobasidiella neoformans, Fi/obasidium floriforme, Leucosporidium scottii, Malassezia furfur, M. pachydermatis, Phaffia rhodozyma, Rhodos poridium toru/oides, Sporidiobolus johnsonii, Sterigmatosporidium polymorphum, Trichosporon beige/ii, T. cutaneum and T. pullulans. The taxa cluster into three main groups. One group contains the non teliospore forming genera Sterigmatosporidium, Filobasidiella, Filobasidium and the anamorphic species T. beigeIii and T. cutaneum. The teliospore formers Leucosporidium, Rhodosporidium and Sporidiobo/us, all of which have simple septal pores, cluster into a single group, despite the heterogeneity of carotenoid formation. By contrast, C. capitatum appears separate, not only from Rhodosporidium, but also from the Filobasidiaceae with which it shares a primitive dolipore septum. The uniqueness of the genus Malassezia among yeasts is confirmed, -
Complementation of a Capsule-Deficient Mutation of Cryptococcus Neoformans Restores Its Virulence YUN C
MOLECULAR AND CELLULAR BIOLOGY, July 1994, p. 4912-4919 Vol. 14, No. 7 0270-7306/94/$04.00+0 Copyright © 1994, American Society for Microbiology Complementation of a Capsule-Deficient Mutation of Cryptococcus neoformans Restores Its Virulence YUN C. CHANG AND K. J. KWON CHUNG* Laboratory of Clinical Investigation, National Institute ofAllergy and Infectious Diseases, National Institutes ofHealth, Bethesda, Maryland 20892 Received 25 January 1994/Returned for modification 4 March 1994/Accepted 12 April 1994 Capsule formation plays a significant role in the pathogenicity of Cryptococcus neoformans. To study the molecular basis of capsule synthesis, the capsule-deficient phenotype of a mutant strain was complemented by transformation. A plasmid rescued from the resulting Cap' transformant complemented a cap59 mutation which was mapped previously by classical recombination analysis. Gene deletion by homologous integration resulted in an acapsular phenotype, indicating that we have identified the CAPS9 gene. The CAP59 gene was assigned to chromosome I by Southern blot analysis of contour-clamped homogeneous electric field gel electrophoresis-resolved chromosomes of C. neoformans var. neoformans. Sequence comparison of genomic and cDNA clones indicated the presence of six introns. CAP59 encoded a 1.9-kb transcript and a deduced protein of 458 amino acids. Analysis of the nucleotide sequence revealed little similarity to existing sequences in the data bank. When the capsule-deficient phenotype was complemented, the originally avirulent C. neoformans strain became virulent for mice. In addition, the acapsular strain created by gene deletion of CAPS9 lost its virulence. This work demonstrates the molecular basis for capsule-related virulence and that the CAP59 gene is required for capsule formation. -
Towards an Integrated Phylogenetic Classification of the Tremellomycetes
http://www.diva-portal.org This is the published version of a paper published in Studies in mycology. Citation for the original published paper (version of record): Liu, X., Wang, Q., Göker, M., Groenewald, M., Kachalkin, A. et al. (2016) Towards an integrated phylogenetic classification of the Tremellomycetes. Studies in mycology, 81: 85 http://dx.doi.org/10.1016/j.simyco.2015.12.001 Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:nrm:diva-1703 available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 81: 85–147. Towards an integrated phylogenetic classification of the Tremellomycetes X.-Z. Liu1,2, Q.-M. Wang1,2, M. Göker3, M. Groenewald2, A.V. Kachalkin4, H.T. Lumbsch5, A.M. Millanes6, M. Wedin7, A.M. Yurkov3, T. Boekhout1,2,8*, and F.-Y. Bai1,2* 1State Key Laboratory for Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China; 2CBS Fungal Biodiversity Centre (CBS-KNAW), Uppsalalaan 8, Utrecht, The Netherlands; 3Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig 38124, Germany; 4Faculty of Soil Science, Lomonosov Moscow State University, Moscow 119991, Russia; 5Science & Education, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL 60605, USA; 6Departamento de Biología y Geología, Física y Química Inorganica, Universidad Rey Juan Carlos, E-28933 Mostoles, Spain; 7Department of Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-10405 Stockholm, Sweden; 8Shanghai Key Laboratory of Molecular Medical Mycology, Changzheng Hospital, Second Military Medical University, Shanghai, PR China *Correspondence: F.-Y. -
12 Tremellomycetes and Related Groups
12 Tremellomycetes and Related Groups 1 1 2 1 MICHAEL WEIß ,ROBERT BAUER ,JOSE´ PAULO SAMPAIO ,FRANZ OBERWINKLER CONTENTS I. Introduction I. Introduction ................................ 00 A. Historical Concepts. ................. 00 Tremellomycetes is a fungal group full of con- B. Modern View . ........................... 00 II. Morphology and Anatomy ................. 00 trasts. It includes jelly fungi with conspicuous A. Basidiocarps . ........................... 00 macroscopic basidiomes, such as some species B. Micromorphology . ................. 00 of Tremella, as well as macroscopically invisible C. Ultrastructure. ........................... 00 inhabitants of other fungal fruiting bodies and III. Life Cycles................................... 00 a plethora of species known so far only as A. Dimorphism . ........................... 00 B. Deviance from Dimorphism . ....... 00 asexual yeasts. Tremellomycetes may be benefi- IV. Ecology ...................................... 00 cial to humans, as exemplified by the produc- A. Mycoparasitism. ................. 00 tion of edible Tremella fruiting bodies whose B. Tremellomycetous Yeasts . ....... 00 production increased in China alone from 100 C. Animal and Human Pathogens . ....... 00 MT in 1998 to more than 250,000 MT in 2007 V. Biotechnological Applications ............. 00 VI. Phylogenetic Relationships ................ 00 (Chang and Wasser 2012), or extremely harm- VII. Taxonomy................................... 00 ful, such as the systemic human pathogen Cryp- A. Taxonomy in Flow