Timber Identification of Autranella, Baillonella and Tieghemella in The

Total Page:16

File Type:pdf, Size:1020Kb

Timber Identification of Autranella, Baillonella and Tieghemella in The Deklerck et al. Plant Methods (2021) 17:64 https://doi.org/10.1186/s13007-021-00766-x Plant Methods RESEARCH Open Access Timber identifcation of Autranella, Baillonella and Tieghemella in the taxonomically challenging Sapotaceae family V. Deklerck1,2*† , E. Price3,4†, S. Vanden Abeele5, K. Lievens1, E. Espinoza4 and H. Beeckman1 Abstract Background: To enforce timber import laws and perform timber species identifcation, the identity of the botanical species must be well-defned. Since the Sapotaceae family is known as a taxonomically challenging family, we focus in this study on the four most valuable Sapotaceae timber species from tropical Africa: Autranella congolensis (De Wild.) A.Chev., Baillonella toxisperma Pierre, Tieghemella africana Pierre and Tieghemella heckelii (A.Chev.) Pierre ex Dubard. The wood anatomical characteristic fber lumen fraction and Direct Analysis in Real Time—Time of Flight Mass Spec- trometry (DART-TOFMS) were used to diferentiate the four species and to make inferences on species delineation and taxonomic identity. Results: We observed diferences in the fber lumen fraction measurements and discerned two groups: (1) A. con- golensis and B. toxisperma, and (2) T. africana and T. heckelii. In addition, all Mann–Whitney U comparisons and difer- ences in distributions (Kolmogorov–Smirnov) for the fber lumen fraction measurements were signifcant between all species. When permutating the data between species within those two groups, signifcant diferences were still found between the species within those groups. This could indicate that the fber lumen fraction is not diagnostic to discern the species. DART-TOFMS analysis showed that A. congolensis and B. toxisperma have distinct chemotypes, while T. heckelii and T. africana have remarkably similar chemotypes. Conclusions: Based on our observations of similar chemotype and weakly diferentiated fber lumen ratio, we sup- port an alternative taxonomic hypothesis that considers Tieghemella monotypic, because of the strong resemblance between T. heckelii and T. africana. Larger sample sizes and further research is required to develop methodology for the identifcation of these species. A taxonomic study utilizing molecular genetics would be benefcial to assess the status of the genus and the species limits. This could have implications towards their potential inclusion on CITES appendices if there is ever need for them to be listed. If Tieghemella africana and T. heckelii remain two distinct spe- cies, they should both be listed. Screening agents should be aware that the morphological and chemical diferences between T. africana and T. heckelii are minimal. Keywords: Sapotaceae, DART-TOFMS, Wood anatomy, Timber identifcation, Taxonomic identity Introduction Illegal logging and timber forensics It is estimated that 30 to 90% of timber from the tropics *Correspondence: [email protected] is illegally sourced [1–6]. In addition to ecological dam- †V. Deklerck and E. Price contributed equally to this work as frst authors 1 Service of Wood Biology, Royal Museum for Central Africa (RMCA), age, there are substantial economic and social problems Leuvensesteensweg 13, 3080 Tervuren, Belgium associated with timber poaching [4]. Tese issues have Full list of author information is available at the end of the article sparked an increased demand for timber identifcation © The Author(s) 2021. This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http:// creat iveco mmons. org/ licen ses/ by/4. 0/. The Creative Commons Public Domain Dedication waiver (http:// creat iveco mmons. org/ publi cdoma in/ zero/1. 0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. Deklerck et al. Plant Methods (2021) 17:64 Page 2 of 10 and timber traceability techniques, with current front- Tieghemella africana is well-known to the international runners being wood anatomy, both traditional and with timber trade as Douka [24]. Tis trade name can occa- machine vision [7–9], Direct Analysis in Real Time Time- sionally cover timber from B. toxisperma and is often of-Flight Mass Spectrometry (DART-TOFMS) [10–12], considered as the same trade category as wood from T. genetic analysis [13] and stable isotope ratio analysis [6, heckelii. However, T. heckelii is traded under the generic 14]. trade name (or pilot name) Makoré, which can include Wood anatomy, DART-TOFMS and genetic analy- timber from T. africana and B. toxisperma. Tieghemella sis are currently the most employed methods to deter- africana is typically found in the evergreen rainforests mine the species identity of timber. However, timber from Cameroon to Cabinda (Angola) in the west, and import laws and adjoining timber species identifcation eastward to the Republic of the Congo and Democratic can only be followed if the identity of the botanical spe- Republic of the Congo (DRC) [25]. Te highest spe- cies is well defned. Until three decades ago, taxonomists cies densities are reported in Equatorial Guinea, west- mainly used morphological traits to describe and delin- ern Gabon and in the Republic of the Congo, north of eate species. However, species can show high levels of Kouilou. In other regions it can be mixed with T. heckelii intraspecifc morphological variation, which complicates and B. toxisperma. Heartwood of T. africana is very simi- accurate species delineation and occasionally results in lar to T. heckelii but tends to be more intensely stained the erroneous splitting of species. Conversely, diferentia- with a more distinct vein pattern (for an image of the tion and speciation are not always accompanied by mor- heartwood of all species, please see Additional fle 1: Fig- phological change, as demonstrated by the abundance ure S1). In provenances from the Republic of the Congo, of cryptic species [15–17], where two or more distinct the wood has been noted to darken to a red violet colour. genetic lineages are classifed under the same taxonomic In addition, T. africana tends to be slightly harder and unit because they are seemingly indistinguishable from heavier than T. heckelii. Te main distribution area for T. a morphological point of view [15]. For this reason, it is heckelii covers eastern Liberia, Côte d’Ivoire and Ghana, important to include molecular data when new species but the species also occurs in lower densities in Nigeria are described and named. Even when DNA-based meth- [26]. As such, the range of T. heckelii overlaps with other ods are incorporated, genetic divergence can remain morphologically similar Sapotaceae species, creating a undetected resulting in wrongly delineated species. Rea- challenge for feld identifcation. Baillonella toxisperma sons for this can include homoplasy (a shared character and A. congolensis occur in low densities in the rainfor- that did not arise from a common ancestor) and evolu- est of southern Nigeria, Cameroon, Equatorial Guinea, tionary processes such as hybridization (production of Gabon, Cabinda (Angola), Republic of the Congo and the viable ofspring by parents from diferent varieties or spe- Democratic Republic of the Congo (DRC) [27, 28]. Bail- cies), chloroplast capture (introgression of a chloroplast lonella toxisperma (Moabi), can look very similar to T. genome from one species into another), reticulate evolu- heckelii, but the distinction is clearer than for T. africana tion (or network evolution, where a group of organisms from Ghana or the Ivory Coast. Baillonella toxisperma originates through the partial merging of ancestor line- is also found mixed with shipments of T. africana and T. ages) or incomplete lineage sorting (common ancestry of heckelii. Autranella congolensis is reported to be falsely gene copies at a single locus extends deeper than previ- sold as B. toxisperma, but Autranella congolensis wood is ous speciation events) [16, 18–20]. harder and darker with a violet colour. Standing trees of B. toxisperma and A. congolensis are quite similar to each Sapotaceae other, with one primary diference being B. toxisperma Te Sapotaceae family is known for its highly homopla- exhibits a distinctively fatter crown [24]. sious morphological characters and the lack of unam- biguous synapomorphies for subfamilies and tribes [21], Taxonomic history leading to the dynamic nature of the Sapotaceae taxon- Although the four Sapotaceae species in this study are omy and the many taxon synonyms [22]. Here, we will currently assigned to three distinct genera, all four spe- focus on the four most important Sapotaceae timber cies were previously included in the genus Mimusops species from tropical Africa: Autranella congolensis (De [22]. Autranella congolensis seems to be related to the Wild.) A.Chev., Baillonella toxisperma Pierre, Tieghe- latter, but it difers in having stipules, a longer corolla
Recommended publications
  • Physical, Mechanical, and Other Properties Of
    ARC: 634.9 TA/OST 73-24 C559a PHYSICAL, MECHANICAL, AND OTHER PROPERTIES OF SELECTED SECONDARY SPECIES in Surinam, Peru, Colombia, Nigeria, Gabon, Philippines, and Malaysia FPL-AID-PASA TA(Aj)2-73 (Species Properties) * PHYSICAL, MECHANICAL, AND OTHER PROPERTIES OF SELECTED SECONDARY SPECIES LOCATED IN SURINAM, PERU, COLOMBIA, NIGERIA, GABON, PHILIPPINES, AND MALAYSIA MARTIN CHUDNOFF, Forest Products Technologist Forest Products Laboratory Forest Service, U.S. Department of Agriculture Madison, Wisconsin 53705 November 1973 Prepared for AGENCY FOR INTERNATIONAL DEVELOPMENT U.S. Department of State Washington, DC 20523 ARC No. 634.9 - C 559a INTRODUCTION This report is a partial response to a Participating Agency Service Agreement between the Agency for Inter­ national Development and the USDA, Forest Service (PASA Control No. TA(AJ)2-73) and concerns a study of the factors influencing the utilization of the tropical forest resource. The purpose of this portion of the PASA obligation is to present previously published information on the tree and wood characteristics of selected secondary species growing m seven tropical countries. The format is concise and follows the outline developed for the second edition of the "Handbook of Hardwoods" published by HMSO, London. Species selected for review are well known in the source countries, but make up a very small component, if any, of their export trade. The reasons why these species play a secondary role in the timber harvest are discussed in the other accompanying PASA reports. ii INDEX Pages SURINAM 1-11 Audira spp. Eperu falcata Eschweilera spp. Micropholis guyanensis Nectandra spp. Ocotea spp. Parinari campestris Parinari excelsa Pouteria engleri Protium spp.
    [Show full text]
  • Complete Index of Common Names: Supplement to Tropical Timbers of the World (AH 607)
    Complete Index of Common Names: Supplement to Tropical Timbers of the World (AH 607) by Nancy Ross Preface Since it was published in 1984, Tropical Timbers of the World has proven to be an extremely valuable reference to the properties and uses of tropical woods. It has been particularly valuable for the selection of species for specific products and as a reference for properties information that is important to effective pro- cessing and utilization of several hundred of the most commercially important tropical wood timbers. If a user of the book has only a common or trade name for a species and wishes to know its properties, the user must use the index of common names beginning on page 451. However, most tropical timbers have numerous common or trade names, depending upon the major region or local area of growth; furthermore, different species may be know by the same common name. Herein lies a minor weakness in Tropical Timbers of the World. The index generally contains only the one or two most frequently used common or trade names. If the common name known to the user is not one of those listed in the index, finding the species in the text is impossible other than by searching the book page by page. This process is too laborious to be practical because some species have 20 or more common names. This supplement provides a complete index of common or trade names. This index will prevent a user from erroneously concluding that the book does not contain a specific species because the common name known to the user does not happen to be in the existing index.
    [Show full text]
  • Diversification of Tree Crops: Domestication of Companion Crops for Poverty Reduction and Environmental Services
    Expl Agric. (2001), volume 37, pp. 279±296 Printed in Great Britain Copyright # 2001 Cambridge University Press REVIEW PAPER DIVERSIFICATION OF TREE CROPS: DOMESTICATION OF COMPANION CROPS FOR POVERTY REDUCTION AND ENVIRONMENTAL SERVICES By R. R. B. LEAKEY{ and Z. TCHOUNDJEU{ {Centre for Ecology and Hydrology, Bush Estate, Penicuik, Midlothian, EH26 0QB, Scotland, UK and {International Centre for Research in Agroforestry, PO Box 2067, YaoundeÂ, Cameroon (Accepted 19 January 2001) SUMMARY New initiatives in agroforestry are seeking to integrate indigenous trees, whose products have traditionally been gathered from natural forests, into tropical farming systems such as cacao farms. This is being done to provide from farms, marketable timber and non-timber forest products that will enhance rural livelihoods by generating cash for resource-poor rural and peri-urban households. There are many potential candidate species for domestication that have commercial potential in local, regional or even international markets. Little or no formal research has been carried out on many of these hitherto wild species to assess potential for genetic improvement, reproductive biology or suitability for cultivation. With the participation of subsistence farmers a number of projects to bring candidate species into cultivation are in progress, however. This paper describes some tree domestication activities being carried out in southern Cameroon, especially with Irvingia gabonensis (bush mango; dika nut) and Dacryodes edulis (African plum; safoutier). As part of this, fruits and kernels from 300 D. edulis and 150 I. gabonensis trees in six villages of Cameroon and Nigeria have been quantitatively characterized for 11 traits to determine combinations de®ning multi-trait ideotypes for a genetic selection programme.
    [Show full text]
  • 2012 Purvis.Pdf (6.007Mb)
    Generating User-friendly Identification Tools From High Resolution Images of Herbarium Specimens of Sapotaceae From the Sangha Trinational David A. Purvis August 2012 Thesis submitted in partial fulfilment of the requirements for the degree of MSc in the Biodiversity and Taxonomy of Plants. ii Acknowledgements With great thanks to my supervisors David Harris, Elspeth Haston and Hannah Atkins, for all their help, knowledge and enthusiam throughout my project. To all RBGE staff who offered their guidance and advice through my project and my years at RBGE, especially Phil Lusby and the legend, Greg Kenicer. To all my identification tool testers David, Hannah, Peter Wilkie, Richard Whittet, Jane Droop and Linda Neaves and anyone who gave their opinions or help through the building of all the tools, especially Clíodhna Ní Bhroin and Carl Berthold. An enormous thanks to all of my fellow MSc students for their friendship and support throughout the whole year. Finally a special thanks to my parents, Jeanette and Gordon, without whom my MSc and whole higher education would not have been possible, and for their support and guidance through everything, thank you. iii Abstract Past and current developments in the creation of plant identification tools are reviewed, and a study made of the potential use of computer technologies, including high resolution digital images. This project was based on a study of members of the family Sapotaceae from the Sangha Trinational region of West-central Africa, using herbarium specimens held in the collections of the Royal Botanic Garden Edinburgh. Written descriptions for all 23 taxa studied, and a character matrix and dichotomous keys for the identification of genera and species are provided.
    [Show full text]
  • Towards a Global Tree Conservation Atlas
    Conserving wildlife since 1903 Towards a Global Tree Conservation atlas Mapping the status and distribution of the world’s threatened tree species Adrian Newton, Sara Oldfield, Gerardo Fragoso, Paul Mathew, Lera Miles, Mary Edwards Department for Environment, Food and Rural Affairs Conserving wildlife since 1903 UNEP World Conservation Fauna & Flora International Monitoring Centre Great Eastern House 219 Huntingdon Road Tenison Road Cambridge CB3 0DL Cambridge CB1 2TT United Kingdom United Kingdom Tel: +44 (0) 1223 277314 Tel: +44 (0) 1223 571000 Fax: +44 (0) 1223 277136 Fax: +44 (0) 1223 461481 E-mail: [email protected] E-mail: [email protected] Website: www.unep-wcmc.org Website: www.fauna-flora.org Director: Mark Collins Director: Mark Rose THE UNEP WORLD CONSERVATION MONITORING CENTRE is the FAUNA & FLORA INTERNATIONAL, founded in 1903 and the world’s biodiversity assessment and policy implementation arm of the first international conservation organization, acts to conserve United Nations Environment Programme (UNEP), the world’s threatened species and ecosystems worldwide, choosing foremost intergovernmental environmental organization. solutions that are sustainable, are based on sound science UNEP-WCMC aims to help decision-makers recognize the and take account of human needs. The organization currently value of biodiversity to people everywhere, and to apply this works in over 60 countries, including more than 25 as part of knowledge to all that they do. The Centre’s challenge is to the Global Trees Campaign. transform complex data into policy-relevant information, to build tools and systems for analysis and integration, and to support the needs of nations and the international community as they engage in joint programmes of action.
    [Show full text]
  • Obtaining Forest Foods from Timber Trees in Cameroon: How Far Do People Walk to Collect Fruits and Caterpillars? P
    Obtaining forest foods from timber trees in Cameroon: How far do people walk to collect fruits and caterpillars? P. Maukonen*, P. Donn*, L. Snook** *Bioversity International, P.O. Box 2008 Messa, Yaounde Cameroon **Bioversity International, Via dei Tre Denari, 472/a, 00057 Maccarese, Rome, Italy Abstract Approximately 61% of timber species in the Congo Basin also bear locally used non- Multiple-use Tree timber forest products. Amongst these are edible fruits of Moabi (Baillonella Species toxisperma), and edible caterpillars on Sapelli (Entandrophragma cylindricum) and Tali (Erythrophleum suaveolens). Participatory mapping combining GPS coordinates Sapelli (Entandrophragma cylindricum) and interviews was carried out with 5 female and 5 male collectors in each of two hosts vast quantities of Imbrasia villages adjacent to each of two logging concessions in Cameroon to: (1) locate the (Nudaurelia) oyemensis, one of the 82 trees from which men and women obtained these foods, in space and on maps that species of caterpillars and larvae included the boundaries of nearby logging concessions; (2) determine the distances commonly consumed in Central Africa. It is travelled by men and women to collect these wild resources (3) gather information also the second most important timber species in terms of volume exported from on the trees and the collection, transformation and sale of these NTFPs, and (4) the region, contributing 1.3 million cubic assess the potential impacts of logging activities on local people’s access to these metres of wood annually to the export food resources. market (Bayol et al., 2012), and is considered vulnerable to extinction as a During one day collecting trips people walk an average of 2.7 km (± 1.42) from the result of this level of demand (Hawthorne, 1998).
    [Show full text]
  • A COMPARATIVE ETHNOBOTANY of the MBUTI Title and EFE HUNTER-GATHERERS in the ITURI FOREST, DEMOCRATIC REPUBLIC of CONGO
    A COMPARATIVE ETHNOBOTANY OF THE MBUTI Title AND EFE HUNTER-GATHERERS IN THE ITURI FOREST, DEMOCRATIC REPUBLIC OF CONGO Author(s) TERASHIMA, Hideaki; ICHIKAWA, Mitsuo Citation African Study Monographs (2003), 24(1/2): 1-168 Issue Date 2003-03 URL https://doi.org/10.14989/68220 Right Type Journal Article Textversion publisher Kyoto University African Study Monographs, 24(1, 2): 1-168, March 2003 1 A COMPARATIVE ETHNOBOTANY OF THE MBUTI AND EFE HUNTER-GATHERERS IN THE ITURI FOREST, DEMOCRATIC REPUBLIC OF CONGO Hideaki TERASHIMA Faculty of Humanities and Sciences, Kobe Gakuin University Mitsuo ICHIKAWA Graduate School of Asian and African Area Studies, Kyoto Univeristy ABSTRACT Ethnobotanical research conducted among four groups of the Mbuti and Efe hunter- gatherers in the Ituri Forest of the Republic of Congo (former Za¨ıre) has revealed their extensive acquaintance with the plant world. A comparison of the plant vernacular names and use shows a cultural diversity and inter-group differences in the knowledge of plants among the groups, although they share a similar overall use pattern and the knowledge of certain important species. The factors affecting such similarities and differences in plant use are discussed in relation to the natural and social conditions. Key Words: Hunter-gatherers; Plant use; Ethnobotany; Tropical rain forest; Cultural diversity. INTRODUCTION I. Intellectual Heritage of the Forest People The Mbuti Pygmies who live in the Ituri Forest of the Democratic Republic of Congo (former Za¨ıre) are one of the best known hunter-gatherers in Africa by the works of Paul Schebesta (1933) and Colin Turnbull (1961, 1965).
    [Show full text]
  • Okoubaka Aubrevillei (Pelleg & Norman): a Synthesis of Existing Knowledge for Research and Conservation in West and Central Africa
    Journal of Biology and Life Science ISSN 2157-6076 2015, Vol. 6, No. 1 Okoubaka Aubrevillei (Pelleg & Norman): A Synthesis of Existing Knowledge for Research and Conservation in West and Central Africa Temitope Israel Borokini1,2 1Plant Genetic Resources Unit, National Center for Genetic Resources and Biotechnology (NACGRAB), Ibadan, Nigeria 2Program in Ecology, Evolution and Conservation Biology, College of Science, University of Nevada Reno, Reno NV 89557-0314. E-mail: [email protected] Received: October 4, 2014 Accepted: October 21, 2014 doi:10.5296/jbls.v6i1.6399 URL: http://dx.doi.org/10.5296/jbls.v6i1.6399 Abstract Okoubaka aubrevillei is the largest parasitic plant known to man. It is a tropical tree species distributed within West and Central Africa. Concerns were drawn to the tree because of its rarity, disjunct distribution in all its native range, paucity of published scientific information and its hemi-parasitic potentials. This article gathered and synthesized all existing scientific information on the tree to provide a solid foundation for further research on the tree. This article provided detailed information on its name etymology, taxonomic history, and geographical distribution including new locations for the tree, ecological significance and behaviour within its range, supported with an updated map illustrating its distribution within West and Central Africa. The possible causes of its rarity in its range were identified and its hemi-parasitic behaviour was hypothesized. In addition, ethnobotanical uses of the tree, symbolism and dendrolatry, and its significance in modern medicine were extensively discussed. The paper concluded with highlights on prospects for immediate conservation, management and research focus areas for the tree species.
    [Show full text]
  • Foraging Ecology and Conservation Biology of African Elephants: Ecological and Evolutionary Perspectives on Elephant-Woody Plant Interactions in African Landscapes
    Foraging ecology and conservation biology of African elephants: Ecological and evolutionary perspectives on elephant-woody plant interactions in African landscapes Item Type Thesis Authors Dudley, Joseph Paine Download date 27/09/2021 15:01:40 Link to Item http://hdl.handle.net/11122/9523 INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter free, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overlaps. Each original is also photographed in one exposure and is included in reduced form at the back o f the book. Photographs included in the original manuscript have been reproduced xerographically in this copy. Higher quality 6” x 9” black and white photographic prints are available for any photographs or illustrations appearing in this copy for an additional charge. Contact UMI directly to order. UMI A Bell & Howell Information Company 300 North Zed) Road, Ann Arbor MI 48106-1346 USA 313/761-4700 800/521-0600 Reproduced with permission of the copyright owner.
    [Show full text]
  • State of the World's Forest Genetic Resources Part 1
    Forests and trees enhance and protect landscapes, ecosystems and production systems. They provide goods and services which are essential to the survival and well-being of all humanity. Forest genetic resources – the heritable materials maintained within and among tree and other woody plant species that are of actual or potential economic, environmental, scientific or societal value – are essential for the continued productivity, services, adaptation and evolutionary processes of forests and trees. This first volume of The State of the World’s Forest Genetic Resources constitutes a major step in building the information and knowledge base required for action towards better conservation and sustainable management of forest genetic resources at the national, regional and international levels. The publication was prepared based on information provided by 86 countries, outcomes from regional and subregional consultations and commissioned thematic studies. It presents definitions and concepts related to forest genetic resources and a FOREST GENETIC RESOURCES review of their value; the main drivers of changes and the trends affecting these vital resources; and key emerging technologies. The central section analyses the current status of conservation and use of forest genetic resources on the basis of reports provided by the countries. The book concludes with recommendations for ensuring that present and future generations continue to benefit from forests and trees, both through innovations in practices and technologies and through enhanced attention
    [Show full text]
  • Accounting for Variation of Substitution Rates Through Time in Bayesian Phylogeny Reconstruction of Sapotoideae (Sapotaceae)
    Molecular Phylogenetics and Evolution 39 (2006) 706–721 www.elsevier.com/locate/ympev Accounting for variation of substitution rates through time in Bayesian phylogeny reconstruction of Sapotoideae (Sapotaceae) Jenny E.E. Smedmark ¤, Ulf Swenson, Arne A. Anderberg Department of Phanerogamic Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden Received 9 September 2005; revised 4 January 2006; accepted 12 January 2006 Available online 21 February 2006 Abstract We used Bayesian phylogenetic analysis of 5 kb of chloroplast DNA data from 68 Sapotaceae species to clarify phylogenetic relation- ships within Sapotoideae, one of the two major clades within Sapotaceae. Variation in substitution rates through time was shown to be a very important aspect of molecular evolution for this data set. Relative rates tests indicated that changes in overall rate have taken place in several lineages during the history of the group and Bayes factors strongly supported a covarion model, which allows the rate of a site to vary over time, over commonly used models that only allow rates to vary across sites. Rate variation over time was actually found to be a more important model component than rate variation across sites. The covarion model was originally developed for coding gene sequences and has so far only been tested for this type of data. The fact that it performed so well with the present data set, consisting mainly of data from noncoding spacer regions, suggests that it deserves a wider consideration in model based phylogenetic inference. Repeatability of phylogenetic results was very diYcult to obtain with the more parameter rich models, and analyses with identical settings often supported diVerent topologies.
    [Show full text]
  • Tieghemella Heckelii(Sapota- Tant Pseudomonas Aeruginosa
    Bertin GK, et al., J Altern Complement Integr Med 2017, 3: 032 DOI: 10.24966/ACIM-7562/100032 HSOA Journal of Alternative, Complementary & Integrative Medicine Research Article moderate growth inhibition of the IRPA tested. The MIC values var- Stem Bark’s Extracts of ied depending on microbial phenotype, and were within the range of 0.048 mg/mL to 12.5 mg/mL. As for the MBC values, also associated Tieghemella heckelii (Sapota- to bacteria strain type, they demonstrated both bacteriostatic and bactericidal effects of the active extracts towards Imipenem-resistant ceae) Against Imipenem-Resis- P. aeruginosa. Conclusion: Stem bark extracts of Tieghemella heckelii showed an tant Pseudomonas aeruginosa: antibacterial effect towards imipenem-resistant P. aeruginosa. They could therefore be used to deplete the prevalence rate of the named Identification of a Prospective resistant strains. Keywords: Antibacterial; Imipenem-resistant Pseudomonas aerugi- Antibacterial Agent nosa; Ivory Coast; Tieghemella heckelii Guede Kipre Bertin1*, Guessennd Kouadio Nathalie2, Kone Abbreviations Mamidou Witabouna3, Mbengue Gbonon Valerie Carole4, Coulibaly Kalpy Julien4 and Dosso Mireille5 ATCC: American Type Collection Culture 1Department of Bacteriology/Virology, Natural Sciences Training and DMSO: Dimethyl Sulfoxide Research Unit, Nangui Abrogoua University, Ivory Coast MBC: Minimum Bactericidal Concentration 2Université Félix Houphouët Boigny, Training and Research Unit Medical Sciences/Institute Pasteur Ivory Coast, Ivory Coast MIC: Minimum Inhibitory Concentration
    [Show full text]