Antifungal Activity of Lactic Acid Bacteria, Isolated from (Mytilus Galloprovincialis Lam.) in the Bulgarian Black Sea Aquatory

Total Page:16

File Type:pdf, Size:1020Kb

Antifungal Activity of Lactic Acid Bacteria, Isolated from (Mytilus Galloprovincialis Lam.) in the Bulgarian Black Sea Aquatory https://doi.org/10.5272/jimab.2020261.2875 Journal of IMAB Journal of IMAB - Annual Proceeding (Scientific Papers). 2020 Jan-Mar;26(1) ISSN: 1312-773X https://www.journal-imab-bg.org Original article ANTIFUNGAL ACTIVITY OF LACTIC ACID BACTERIA, ISOLATED FROM (MYTILUS GALLOPROVINCIALIS LAM.) IN THE BULGARIAN BLACK SEA AQUATORY Sevginar Ibryamova1, Nina Arhangelova2, Teodora Koynova1, Dimitar Dimitrov1, Zheni Dimitrova1, Radoslav Ivanov1, Karamphil Kalchev1, Nescho Chipev1, Nikolay Natchev1, Tsveteslava Ignatova-Ivanova1* 1) Department of Biology, Shumen University, Shumen, Bulgaria 2) Department of Physics and Astronomy, Shumen University, Shumen, Bulgaria.. ABSTRACT: Currently, aquaculture has become an important economic In the present study we present the results from an- activity in many countries. In large-scale production fa- tifungal activity of Lactic Acid Bacteria, isolated from M. cilities, where aquatic animals are exposed to stressful con- galloprovincialis Lam. from the Bulgarian Black Sea ditions, problems related to diseases and deterioration of aquatory. The Black Sea mussel (M. galloprovincialis environmental conditions often result in serious economic Lam.) is in fact the only marine species grown as losses. During recent decades, prevention and control of aquaculture in the Bulgarian section of the Black Sea. diseases have led to a substantial increase in the use of The mussels have an exceptional nutritional value, mak- veterinary medicines. However, the utility of antimicro- ing them highly suitable for the human diet. The cultiva- bial agents as apreventive measure has been questioned, tion of sea products, in particular the Black Sea clam, is given extensive documentation of the evolution of anti- becoming an important part of the Western Black Sea in- microbial resistance among pathogenic bacteria [1]. From dustry. With increasing of the tourist pressure and the con- a social point of view, safe food forms a significant prob- struction activities on the Black Sea coast, maritime pol- lem for modern civilization. The cultivation of sea prod- lution increased in the last decades. The pollutants in- ucts, in particular the Black Sea clam, had becom an im- clude various pathogenic microorganisms - Escherichia portant part of the Western Black Sea industry. The mus- coli, Staphylococcus aureus, Salmonella thyphimurium, sels are flter-feeding organisms and can concentrate bacte- Hymeniacidon perlevis, incl. the cholera cause (Vibrioo ria in high number [2]. The microbiota found in shellfishes cholera). Such pathogenic microorganisms are often can be divided into autochtonous and allochtonous mi- present in the mussels and can cause the spread of vari- croorganisms, and reflects the microbial population of the ous diseases. In this study 2 isolates Lactic acid bacteria, water in which they grow [3]. On the other hand, it has from M. galloprovincialis Lam have been identified as been found that seafood is a source of lactic acid bacteria Lactobacillus sp. and characterized as cultures with prom- (LAB), which synthesize substances with antimicrobial ising antifungal activity. The antifungal activity of our activity against many pathogenic microorganisms [2, 4]. new isolates Lactobacillus sp. lineages, seems to be a Consuming foods containing high quantities of chemical promising advantage, suggesting their potential applica- conservants provoked the interest in the use of natural and tions in different food technologies. minimally processed foods, with a focus on the use of natu- rally produced antimicrobial agents - bioconversants such Keywords: Bivalvia, Mytilus galloprovincialis Lam, as bacteriocins [5]. Bacteriocin producing LABs can im- probiotic bacteria, pathogens, Black Sea, prove the aquatic environment of the shrimp and fish aqua- cultures. The development of bacteriocinogenic strains and INTRODUCTION the isolation of bacteriocins from seafood and products Worldwide, people obtain about 25% of their ani- may result in valuable strains that are used both as mal protein from fish and shellfish and consumer’s demand bioconversants and as food (and feed) additives in aqua- for fish continues to climb. The Black Sea mussel (M. culture animals [6]. galloprovincialis Lam.) is the only species of mussels Currently, the food industry depends on chemical grown as aquaculture in the Bulgarian Black Sea aquatory. preservatives to extend the shelf life and control the growth Mussels have an exceptional nutritional value making them of spoilage fungi. The consumer’s awareness about the suitable for the human diet. Mussel flesh is rich in sele- health hazards associated with chemicals has recently in- nium, calcium, iron, magnesium, phosphorous and vita- creased, and they are demanding for processed foods that mins (A, B1, B2, B6, B12 and C). Mussel farming has an are free of preservatives. There are many natural alterna- important economic impact in many European countries. tive preservatives produced by certain microorganisms, J of IMAB. 2020 Jan-Mar;26(1) https://www.journal-imab-bg.org 2875 however these microorganisms have to be non-toxic, easy 18 h) on MRS at 370C and in limitation of oxygen (tubes to grow and require simple media for cultivation [7]. Lac- or Petri dishes with the strains were incubated in plastic tic acid bacteria (LABs) represent a known potential source bags, which limited the oxygen content). for generating a variety of secondary metabolits such as X-Gal-based medium bacteriocines, organic acids and peptides [8]. In the past The modified MRS agar was used as the medium for decade the interest for antifungal LABs has increased and the incorporation of 5-bromo-4-chloro-3-indolyl β-D- different studies have showed that many LAB strains have galactopyranoside X-Gal (Boehringer Mannheim, the potential to impact the proliferation of fungi in vari- Montréal, Canada) [14]. ous food and feed materials [9]. LABs, due to their long API 50CHL System Assay Initial identiûcation of history of safe use in food and feed fermentations, [10] all the strains was performed by API 50CHL system have received both GRAS (Generally Recognised as Safe) (BioMerieux, Craponne, France), according to the manu- and QPS (Qualified Presumption of Safety) status in the facturer’s instructions. The fermentation proûles were read EU. Therefore, LABs have high potential as antifungal after incubation at 37C in anaerobic conditions, for 3 days. biocontrol agents in the future. The antifungal effect by Test Microrganisms Aspergillus niger, Penicillium the culture supernatant of various LAB strains against few claviforme, Saccharomyces cerevisae, Candida albicans fungi including food-deteriogens has been studied by vari- 8673 and Candida glabrata 72 were obtained from the ous authors [7]. Several compounds have been proposed National Bank for Industrial Microorganisms and Cell Cul- as responsible for the antifungal activity of LAB, like or- tures, Sofia, Bulgaria. All the isolates were checked for ganic acids, low molecular weight compounds, phenylace- purity and maintained in slants of Nutrient agar. tic and fatty acids, cyclic dipeptides, proteinaceous com- Assay for Antifungal Activity Antifungal assay was pounds and other miscellaneous compounds e.g. lactones performed by the well disc diffusion method using soft [11]. The fungistatic activity of pentocin TV35b against 0.8% agar. Agar medium was added to sterile Petri dishes Candida albicans and of two LAB strains against Fusarium seeded with 100 µL of each test yeast and fungi strains. (isolated from cereals) has been reported [12]. Due to their Wells of equal distance were dug on the seeded plates. inhibitory spectrum, these peptides are considered to be Before the assays, the strains LAB were twice pre-cultured powerful antimicrobials to target bacteria, fungi and para- in MRS broth, for 24h at 37°C. Exponential Lactobacillus sites [13]. The use of probiotics or beneficial bacteria, cultures in MRS broth were used as inoculum for the anti- which control pathogens through a variety of mechanisms, fungal tests. The plates were incubated at 37°C for 48 h. is increasingly viewed as an alternative to antibiotic treat- The antifungal activity was assayed by measuring the di- ment. ameter of the inhibition zone formed around the well [15]. In this study 2 isolates Lactic acid bacteria, from M. All Antifungal Activity of Lactic Acid Bacteria, Isolated galloprovincialis Lam have been identified as Lactoba- from M. galloprovincialis Lam 3 experiments were per- cillus sp. and characterized as cultures with promising an- formed in triplicates. tifungal activity. The antifungal activity of the new iso- lates Lactobacillus sp., seems to be possess potential for RESULTS AND DISCUSSION applications in different food technologies. The microscopic pictures were performed using stereomicroscope OPTIKA (Italy) with a camera Canon MATERIALS AND METHODS EOS 60D. Place and duration of the study: The study was con- The microorganisms were isolated from M. gallo- ducted at the Department of Biology, University of Shumen, provincialis Lam. (figure 1) in the Bulgarian Black Sea Bulgaria, from September 2018 to December 2018. aquatory. The microscopic pictures were performed using Collection of samples stereomicroscope OPTIKA (Italy) with a camera Canon The mussels were harvested from northern part of EOS 60D. the Bulgarian Black Sea aquatory. After collection, the samples (about 10 kg) were immediately refrigerated (4°C) Fig. 1. General view of a dissected M. galloprovin- and transported to
Recommended publications
  • FINAL RISK ASSESSMENT for Aspergillus Niger (February 1997)
    ATTACHMENT I--FINAL RISK ASSESSMENT FOR Aspergillus niger (February 1997) I. INTRODUCTION Aspergillus niger is a member of the genus Aspergillus which includes a set of fungi that are generally considered asexual, although perfect forms (forms that reproduce sexually) have been found. Aspergilli are ubiquitous in nature. They are geographically widely distributed, and have been observed in a broad range of habitats because they can colonize a wide variety of substrates. A. niger is commonly found as a saprophyte growing on dead leaves, stored grain, compost piles, and other decaying vegetation. The spores are widespread, and are often associated with organic materials and soil. History of Commercial Use and Products Subject to TSCA Jurisdiction The primary uses of A. niger are for the production of enzymes and organic acids by fermentation. While the foods, for which some of the enzymes may be used in preparation, are not subject to TSCA, these enzymes may have multiple uses, many of which are not regulated except under TSCA. Fermentations to produce these enzymes may be carried out in vessels as large as 100,000 liters (Finkelstein et al., 1989). A. niger is also used to produce organic acids such as citric acid and gluconic acid. The history of safe use for A. niger comes primarily from its use in the food industry for the production of many enzymes such as a-amylase, amyloglucosidase, cellulases, lactase, invertase, pectinases, and acid proteases (Bennett, 1985a; Ward, 1989). In addition, the annual production of citric acid by fermentation is now approximately 350,000 tons, using either A.
    [Show full text]
  • Aspergillus Niger Research Timothy C
    Cairns et al. Fungal Biol Biotechnol (2018) 5:13 https://doi.org/10.1186/s40694-018-0054-5 Fungal Biology and Biotechnology REVIEW Open Access How a fungus shapes biotechnology: 100 years of Aspergillus niger research Timothy C. Cairns*, Corrado Nai* and Vera Meyer* Abstract In 1917, a food chemist named James Currie made a promising discovery: any strain of the flamentous mould Aspergillus niger would produce high concentrations of citric acid when grown in sugar medium. This tricarboxylic acid, which we now know is an intermediate of the Krebs cycle, had previously been extracted from citrus fruits for applications in food and beverage production. Two years after Currie’s discovery, industrial-level production using A. niger began, the biochemical fermentation industry started to fourish, and industrial biotechnology was born. A century later, citric acid production using this mould is a multi-billion dollar industry, with A. niger additionally produc- ing a diverse range of proteins, enzymes and secondary metabolites. In this review, we assess main developments in the feld of A. niger biology over the last 100 years and highlight scientifc breakthroughs and discoveries which were infuential for both basic and applied fungal research in and outside the A. niger community. We give special focus to two developments of the last decade: systems biology and genome editing. We also summarize the current interna- tional A. niger research community, and end by speculating on the future of fundamental research on this fascinating fungus and its exploitation in industrial biotechnology. Keywords: Aspergillus niger, Biotechnology, Industrial biology, Systems biology, Genome editing, Citric acid Introduction €4.7 billion, which was expected to reach up to €10 bil- For millennia, humanity has practiced rudimental forms lion within the next decade [2].
    [Show full text]
  • Nomination Background: Stachybotrys Chartarum Strain 2 Mold (Atranone Chemotype) (CASRN: STACHYSTRN2)
    Stachybotrys chartarum (or S. atra or S. alternans) [CAS No. 67892-26-6] Review of Toxicological Literature June 2004 Stachybotrys chartarum (or S. atra or S. alternans) [CAS No. 67892-26-6] Review of Toxicological Literature Prepared for National Toxicology Program (NTP) National Institute of Environmental Health Sciences (NIEHS) National Institutes of Health U.S Department of Health and Human Services Contract No. N01-ES-35515 Project Officer: Scott A. Masten, Ph.D. NTP/NIEHS Research Triangle Park, North Carolina Prepared by Integrated Laboratory Systems, Inc. Research Triangle Park, North Carolina June 2004 Abstract Stachybotrys chartarum is a greenish-black mold in the fungal division Deuteromycota, a catch-all group for fungi for which a sexually reproducing stage is unknown. It produces asexual spores (conidia). The morphology and color of conidia and other structures examined microscopically help distinguish the species from other molds found in indoor air that may contaminate materials in buildings that have suffered water intrusion. S. chartarum may ultimately overgrow other molds that have also produced colonies on wet cellulosic materials such as drywall (gypsum board, wallboard, sheet rock, etc.). Because of the likelihood that it may produce toxic macrocyclic trichothecenes and hemolytic stachylysin (exposure to which may be associated with idiopathic pulmonary hemorrhage [IPH] in infants), S. chartarum exposure is of concern to the members of the general public whose homes and workplaces have been contaminated after water intrusion, to agricultural and textile workers who handle contaminated plant material, and to workers involved in remediation of mold-damaged structures. Dry conidia, hyphae, and other fragments can be mechanically aerosolized as inhalable particulates.
    [Show full text]
  • Studies on Identification of the Food Born Fungal Pathogens and Their
    ACTA SCIENTIFIC AGRICULTURE (ISSN: 2581-365X) Volume 3 Issue 10 October 2019 Review Article Studies on Identification of the Food Born Fungal Pathogens and their Nadia Jabeen1* and Khuram Shahzad Pathogenic2 Effects on Human Health 1Department of Agriculture, Hazara University, Khyber Pakhtun Khawa (KPK), Pakistan 2Department of Agronomy, Agricultural University Peshawer, Khyber Pakhtun Khawa (KPK), Pakistan *Corresponding Author: Received: Nadia Published:Jabeen, Department of Agriculture, Hazara University, Khyber Pakhtun Khawa (KPK), Pakistan. DOI: September 12, 2019; September 26, 2019 10.31080/ASAG.2019.03.0667 Abstract The present review research was conducted to find out the quality of food available at surrounding food spots in front gate of Hazara University. Samples were taken from different burger shops and few vegetables and dry fruits seller. The fugal pathogens were identified by culturing in the Microbiology lab and studied for characterization on morphological basis and from the literature [1,2]. Aspergillus niger Aspergillus flavus. It was observed that mostly shopkeepers were using expire dated bread, not showing the symptoms but having the pathogens. The Aspergillus niger Aspergillus flavus vegetablesKeywords: were also contaminated with and Pathogen; Human Health; ; Introduction a mycelium (plural, mycelia). Three kinds of reproductive struc- Fungi is included in the plant kingdom, they lack chlorophyll, tures occur in fungi: (1) Sporangia, which are involved in the for- chemo heterotrophs and lack of mobility. Fungal cell contains mation of spores; (2) Gametangia, structures within which gametes membrane bound cell organelles including nuclei, mitochondria, form; and (3) Conidiophores, structures that produce conidia, mul- Golgi apparatus, endoplasmic reticulum and lysosomes and are tinucleate asexual spores.
    [Show full text]
  • Diversity Within Aspergillus Niger Clade and Description of a New Species: Aspergillus Vinaceus Sp
    Journal of Fungi Article Diversity within Aspergillus niger Clade and Description of a New Species: Aspergillus vinaceus sp. nov. Josué J. da Silva 1, Beatriz T. Iamanaka 2, Larissa S. Ferranti 1, Fernanda P. Massi 1, Marta H. Taniwaki 2 , Olivier Puel 3 , Sophie Lorber 3 , Jens C. Frisvad 4 and Maria Helena P. Fungaro 1,* 1 Centro de Ciências Biológicas, Universidade Estadual de Londrina, Londrina, Paraná 86057-970, Brazil; [email protected] (J.J.d.S.); [email protected] (L.S.F.); [email protected] (F.P.M.) 2 Centro de Ciência e Qualidade de Alimentos, Instituto de Tecnologia de Alimentos, Campinas, São Paulo 13070-178, Brazil; [email protected] (B.T.I.); [email protected] (M.H.T.) 3 Toxalim (Research Centre in Food Toxicology), INRAE, ENVT, INP-Purpan, 31027 Toulouse, France; [email protected] (O.P.); [email protected] (S.L.) 4 Department of Biotechnology and Biomedicine, Technical University of Denmark, 2800 Lyngby, Denmark; [email protected] * Correspondence: [email protected]; Tel.: +55-4399-955-4100 Received: 4 November 2020; Accepted: 14 December 2020; Published: 17 December 2020 Abstract: Diversity of species within Aspergillus niger clade, currently represented by A. niger sensu stricto and A. welwitshiae, was investigated combining three-locus gene sequences, Random Amplified Polymorphic DNA, secondary metabolites profile and morphology. Firstly, approximately 700 accessions belonging to this clade were investigated using calmodulin gene sequences. Based on these sequences, eight haplotypes were clearly identified as A. niger (n = 247) and 17 as A. welwitschiae (n = 403). However, calmodulin sequences did not provide definitive species identities for six haplotypes.
    [Show full text]
  • Optimization of Citric Acid Production by Substrate Selection Using Gamma Ray Induced Mutant Strain of Aspergillusniger by Shamima Nasrin, Mejbah Uddin Unsary & Md
    Global Journal of Medical Research: C Microbiology and Pathology Volume 17 Issue 2 Version 1.0 Year 2017 Type: Double Blind Peer Reviewed International Research Journal Publisher: Global Journals Inc. (USA) Online ISSN: 2249-4618 & Print ISSN: 0975-5888 Optimization of Citric Acid Production by Substrate Selection using Gamma Ray Induced Mutant Strain of Aspergillusniger By Shamima Nasrin, Mejbah Uddin Unsary & Md. Khorshed Alam Jahangir Nagar University Abstract- The worldwide demand for citric acid is increasing with the rising population and industrialization. The growing demand for citric acid and the need for alternative materials as substrates in the recent years have led to the choice of a novel and economically viable substrate, namely jackfruit (outer portion) and molasses for citric acid biosynthesis. Hydrolysis these substrates with 0.05N HCl followed by fermentation using two isolates of Aspergillus niger were investigated for citric acid production under submerged culture condition in a period of 15 days. The products of the microbial metabolism namely residual sugar, total titratable acidity (TTA), citric acid, and biomass contents were determined periodically. Maximum citric acid production was found after 12 days of fermentation for both isolates, namely Aspergillus niger CA16, the parent strain and gamma ray induced mutant Aspergillus niger 79/20. Citric acid production was found highest in the absence of Prescott salt by Aspergillus niger CA16 in mixed fermentation medium which was about 16.35 mg/ml and lowest in jackfruit medium, 12.88 mg/ml at day 12. Whereas in the presence of Prescott salt, lowest citric acid production was also found in jackfruit medium, 7.21 mg/ml and highest in mixed medium, 11.54 mg/ml.
    [Show full text]
  • Antifungal Properties of Lactic Acid Bacteria (LAB) Isolated from Ricinus Communis , Pentaclethra Macrophylla and Yoghurts
    Global Advanced Research Journal of Food Science and Technology (ISSN: 2315-5098) Vol. 2(1) pp. 001-006, February, 2013 Available online http://garj.org/garjfst/index.htm Copyright © 2013 Global Advanced Research Journals Full Length Research Paper Antifungal properties of lactic acid bacteria (LAB) isolated from Ricinus communis , Pentaclethra macrophylla and Yoghurts *Oranusi, S, Braide W, Oguoma O I. Department of Microbiology, Federal University of Technology, Owerri, Imo State, Nigeria Accepted 09 January 2012 The antifungal activity of lactic acid bacteria (LAB) isolates from Ricinus communis (Ogiri), Pentaclethra macrophylla (Ugba) and Yoghurt samples against moulds associated with food spoilage Aspergillus niger, Aspergillus flavus, Aspergillus fumigatus, Mucor, Penicillium, Rhizopus and Aspergillus nidulans was investigated using agar diffusion technique. Aspergillus fumigatus was the most susceptible with inhibition zone diameters ranging from 8mm for Lactococcus lactis to 20mm for positive control fluconazole. Pediococcus spp had no antifungal effect on any of the test fungi. None of the LAB isolates had good activity against Aspergillus flavus and Rhizopus spp. Aspergillus niger was inhibited only by Lactococcus lactis . The present study indicates that the LAB isolates if optimized and improved could be used as a natural, food-grade biopreservative agent for management of fungal contamination and food spoilage, thus preventing problems associated with mycotoxins in food and feed products. It is suggested that effective GMP and HACCP application in handling the affairs of food and feed storage/production will no doubt make the use of LAB as preservative a lot easier. Keywords: Antifungal, Biopreservative, Lactic acid bacteria, Ogiri, Ugba, Yoghurt. INTRODUCTION Fungi have a profound biological and economic impact as the production of mycotoxins which are known to be toxic food spoilage agents, decomposers, plant and animal to human and animals (Sweeney and Dobson, 1998; pathogens.
    [Show full text]
  • Solid State Fermentation of Wheat Bran for Production of Glucoamylase by Aspergillus Niger Khushboo Gupta1*, S
    SSR Inst. Int. J. Life Sci. ISSN (O): 2581-8740 | ISSN (P): 2581-8732 Gupta and Nagar, 2020 DOI: 10.21276/SSR-IIJLS.2020.6.4.6 Research Article Solid State Fermentation of Wheat Bran for Production of Glucoamylase by Aspergillus niger Khushboo Gupta1*, S. J. Nagar2 1Student, Department of Biochemical Engineering, HBTU, Kanpur, India 2Professor, Department of Biochemical Engineering, HBTU, Kanpur, India *Address for Correspondence: Khushboo Gupta, Student, Department of Biochemical Engineering, HBTU, Kanpur, India E-mail: [email protected] Received: 16 Dec 2019/ Revised: 29 Jan 2020/ Accepted: 22 Jun 2020 ABSTRACT Background: Glucoamylase is an exo-enzyme use for the digestion of starch. It is widely used in production of glucose from starch, preparation of high fructose corn syrup (HFCS), baking industry, and alcohol production etc. Methods: The present study was deals with the optimization (pH, Temperature, inoculum size, inoculum age, carbon source, and nitrogen source) of the production media (wheat bran) for the production of glucoamylase from Aspergillus niger. Results: optimized study suggested that the highest production of glucoamylase was observed at 35oC temperature, pH 6, inoculum size 15% at 5 day inoculum age. Best production of glucoamylase was observed as 0.6932 U/ml at the optimized condition. Conclusion: Wheat bran is a good source for the production glucoamylase by A. niger. Glucoamylase can be produced by A. niger through solid state fermentation of wheat bran. Pre-treatment of wheat bran can improve the production of glucoamylase. Key-words: - Aspergillus niger, Glucoamylase, Solid state fermentation, SSF, Wheat bran production of glucoamylase INTRODUCTION It is an exo-enzyme use for the hydrolysis of The 0.13% trace amount of calcium’s obtained in carbohydrate.
    [Show full text]
  • An Investigation Into Techniques for Cleaning Mold-Contaminated Home Contents
    Journal of Occupational and Environmental Hygiene, 1: 442–447 ISSN: 1545-9624 print / 1545-9632 online Copyright c 2004 JOEH, LLC DOI: 10.1080/15459620490462823 An Investigation into Techniques for Cleaning Mold-Contaminated Home Contents S.C. Wilson, T.L. Brasel, C.G. Carriker, G.D. Fortenberry, M.R. Fogle, J.M. Martin, C. Wu, L.A. Andriychuk, E. Karunasena, and D.C. Straus Center for Indoor Air Research, Department of Microbiology and Immunology, Texas Tech University Health Sciences Center, Lubbock, Texas This study examined the efficacy of the following treatments and comprehensive testing methodologies for determining to reduce selected fungal spore and mycotoxin levels on materi- what levels of spores and/or mycotoxins are present on contents als commonly found in home contents: (1) gamma irradiation inside structures. For example, the identification of fungal at a 10–13 kiloGray exposure, (2) a detergent/bleach wash, and (3) a steam cleaning technique. A minimum of six repli- colonies on contents can be performed using tape lift and swab (1) cates were performed per treatment. Paper, cloth, wood, and sampling; however, some items may have spores hidden carpet were inoculated with either fungal spores (Stachybotrys inside them or in hard to reach areas, and these sampling chartarum, Aspergillus niger, Penicillium chrysogenum,or techniques are often inadequate to extract the spores. Sam- 2 Chaetomium globosum) at 240,000 spores/2.54 cm of mate- pling techniques for spores and hyphae on contents are there- rial or with the mycotoxins roridin A, T-2, and verrucarin A at fore best viewed as being approximate and not comprehensive 10 µg per 2.54 cm2 of material.
    [Show full text]
  • The Quest for a General and Reliable Fungal DNA Barcode
    The Open Applied Informatics Journal, 2011, 5, (Suppl 1-M6) 45-61 45 Open Access The Quest for a General and Reliable Fungal DNA Barcode Vincent Robert*,1, Szaniszlo Szöke1, Ursula Eberhardt1, Gianluigi Cardinali2, Wieland Meyer3, Keith A. Seifert4, C. Andre Lévesque4 and Chris T. Lewis4 1CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands 2Dipartimento Biologia Applicata- Microbiologia, Università degli Studi di Perugia, Perugia, Italy 3Molecular Mycology Research Laboratory, CIDM, Westmead Millennium Institute, SEIB, Sydney Medical School - Westmead Hospital, The University of Sydney, Sydney, Australia 4Biodiversity (Mycology & Botany), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, Canada Abstract: DNA sequences are key elements for both identification and classification of living organisms. Mainly for historical reasons, a limited number of genes are currently used for this purpose. From a mathematical point of view, any DNA segment, at any location, even outside of coding regions and even if they do not align, could be used as long as PCR primers could be designed to amplify them. This paper describes two methods to search genomic data for the most efficient DNA segments that can be used for identification and classification. Keywords: Genome, molecular, sequences, barcoding, identification, classification, fungi. 1. INTRODUCTION When first large molecular phylogenetic studies were completed, it was obvious that many clades were poorly Since the early days of classification, taxonomists have supported statistically when only one or two genes were struggled with the available information and characteristics used. Recently, several authors explored possibilities for of their organisms of interest to develop systems that reflect analyzing several genes to obtain the true phylogeny [1-7].
    [Show full text]
  • Analysis of Regulation of Pentose Utilisation in Aspergillus Niger Reveals Evolutionary Adaptations in Eurotiales
    available online at www.studiesinmycology.org StudieS in Mycology 69: 31–38. 2011. doi:10.3114/sim.2011.69.03 Analysis of regulation of pentose utilisation in Aspergillus niger reveals evolutionary adaptations in Eurotiales E. Battaglia1, L. Visser1, A. Nijssen1, G.J. van Veluw1, H.A.B. Wösten1 and R.P. de Vries1,2* 1Microbiology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands; 2CBS-KNAW, Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands. *Correspondence: Ronald P. de Vries, [email protected] Abstract: Aspergilli are commonly found in soil and on decaying plant material. D-xylose and L-arabinose are highly abundant components of plant biomass. They are released from polysaccharides by fungi using a set of extracellular enzymes and subsequently converted intracellularly through the pentose catabolic pathway (PCP). In this study, the L-arabinose responsive transcriptional activator (AraR) is identified in Aspergillus niger and was shown to control the L-arabinose catabolic pathway as well as expression of genes encoding extracellular L-arabinose releasing enzymes. AraR interacts with the D-xylose-responsive transcriptional activator XlnR in the regulation of the pentose catabolic pathway, but not with respect to release of L-arabinose and D-xylose. AraR was only identified in the Eurotiales, more specifically in the family Trichocomaceae and appears to have originated from a gene duplication event (from XlnR) after this order or family split from the other filamentous ascomycetes. XlnR is present in all filamentous ascomycetes with the exception of members of the Onygenales. Since the Onygenales and Eurotiales are both part of the subclass Eurotiomycetidae, this indicates that strong adaptation of the regulation of pentose utilisation has occurred at this evolutionary node.
    [Show full text]
  • Aspergillus and Penicillium Identification Using DNA Sequences: Barcode Or MLST?
    Appl Microbiol Biotechnol (2012) 95:339–344 DOI 10.1007/s00253-012-4165-2 MINI-REVIEW Aspergillus and Penicillium identification using DNA sequences: barcode or MLST? Stephen W. Peterson Received: 28 March 2012 /Revised: 9 May 2012 /Accepted: 10 May 2012 /Published online: 27 May 2012 # Springer-Verlag (outside the USA) 2012 Abstract Current methods in DNA technology can detect several commodities. Aspergillus fumigatus, Aspergillus single nucleotide polymorphisms with measurable accuracy flavus, Aspergillus terreus (Walsh et al. 2011), and using several different approaches appropriate for different Talaromyces (syn. 0 Penicillium) marneffei (Sudjaritruk uses. If there are even single nucleotide differences that are et al. 2012) are recognized opportunistic pathogens of humans, invariant markers of the species, we can accomplish identifi- especially those with weakened immune systems. Aspergillus cation through rapid DNA-based tests. The question of whether niger is used for the production of enzymes and citric acid we can reliably detect and identify species of Aspergillus and (e.g., Dhillon et al. 2012), Aspergillus oryzae is used to pro- Penicillium turns mainly upon the completeness of our alpha duce soy sauce, Penicillium roqueforti ripens blue cheeses and taxonomy, our species concepts, and how well the available penicillin is produced by Penicillium chrysogenum (e.g., Xu et DNA data coincide with the taxonomic diversity in the family al. 2012). Heat-resistant Byssochlamys species can grow in Trichocomaceae. No single gene is yet known that is invariant pasteurized fruit juices (Sant’ana et al. 2010). These genera within species and variable between species as would be opti- along with a few others comprise the family Trichocomaceae.
    [Show full text]