Comparison of Evolutionary Rates in the Mitochondrial DNA Cytochrome B Gene and Control Region and Their Implications for Phylog
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Oreochromis Niloticus): Molecular Cloning, Tissue Distribution, and Transcriptional Changes in T Various Salinity of Seawater
Genomics 112 (2020) 2213–2222 Contents lists available at ScienceDirect Genomics journal homepage: www.elsevier.com/locate/ygeno Characterization of two kcnk3 genes in Nile tilapia (Oreochromis niloticus): Molecular cloning, tissue distribution, and transcriptional changes in T various salinity of seawater Zheng-Yong Wena,b, Chao Bianb, Xinxin Youa,b, Xinhui Zhangb, Jia Lib, Qiuyao Zhana,b, ⁎ ⁎ Yuxiang Penga,b, Yuan-You Lic, , Qiong Shia,b, a BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China b Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Academy of Marine Sciences, BGI Marine, BGI, Shenzhen 518083, China c School of Marine Sciences, South China Agricultural University, Guangzhou 510642, China ARTICLE INFO ABSTRACT Keywords: As one important member of the two-pore-domain potassium channel (K2P) family, potassium channel subfamily kcnk3 gene K member 3 (KCNK3) has been reported for thermogenesis regulation, energy homeostasis, membrane potential Gene structure conduction, and pulmonary hypertension in mammals. However, its roles in fishes are far less examined and Genomic survey published. In the present study, we identified two kcnk3 genes (kcnk3a and kcnk3b) in an euryhaline fish, Nile Phylogenetic analysis tilapia (Oreochromis niloticus), by molecular cloning, genomic survey and laboratory experiments to investigate Tissue distribution their potential roles for osmoregulation. We obtained full-length coding sequences of the kcnk3a and kcnk3b kcnk3 cluster Osmoregulation genes (1209 and 1173 bp), which encode 402 and 390 amino acids, respectively. Subsequent multiple sequence Nile Tilapia (Oreochromis niloticus) alignments, putative 3D-structure model prediction, genomic survey and phylogenetic analysis confirmed that two kcnk3 paralogs are widely presented in fish genomes. -
A Functional-Morphological Study on the Attachment, Respiration and Feeding Mechanisms in Balitorinae (Balitoridae, Teleostei)
Faculty of Sciences Department of Biology Research group: Evolutionary Morphology of Vertebrates Academic year 2012-2013 A functional-morphological study on the attachment, respiration and feeding mechanisms in Balitorinae (Balitoridae, Teleostei) De Meyer Jens Supervisor: Dr. Tom Geerinckx Thesis submitted to obtain the degree of Tutor: Dr. Tom Geerinckx Master in Biology II © Faculty of Sciences – Evolutionary Morphology of Vertebrates Deze masterproef bevat vertrouwelijk informatie en vertrouwelijke onderzoeksresultaten die toebehoren aan de UGent. De inhoud van de masterproef mag onder geen enkele manier publiek gemaakt worden, noch geheel noch gedeeltelijk zonder de uitdrukkelijke schriftelijke voorafgaandelijke toestemming van de UGent vertegenwoordiger, in casu de promotor. Zo is het nemen van kopieën of het op eender welke wijze dupliceren van het eindwerk verboden, tenzij met schriftelijke toestemming. Het niet respecteren van de confidentiële aard van het eindwerk veroorzaakt onherstelbare schade aan de UGent. Ingeval een geschil zou ontstaan in het kader van deze verklaring, zijn de rechtbanken van het arrondissement Gent uitsluitend bevoegd daarvan kennis te nemen. All rights reserved. This thesis contains confidential information and confidential research results that are property to the UGent. The contents of this master thesis may under no circumstances be made public, nor complete or partial, without the explicit and preceding permission of the UGent representative, i.e. the supervisor. The thesis may under no circumstances be copied or duplicated in any form, unless permission granted in written form. Any violation of the confidential nature of this thesis may impose irreparable damage to the UGent. In case of a dispute that may arise within the context of this declaration, the Judicial Court of© All rights reserved. -
Loaches 2 in and Your Final Choices Are All Compatible
Checklist Never release your aquarium How to care for... Before purchase make sure that: animals or plants into the wild Never release an animal or plant bought for a home aquarium into the wild. It is illegal and for most fish species 1 You have the appropriate equipment and position for the aquarium. this will lead to an untimely and possibly lingering death because they are not native to this country. Any animals or You have researched all the species you are interested plants that do survive might be harmful to the environment. Loaches 2 in and your final choices are all compatible. You are familiar with how to transport and release Important things to remember 3 Always buy... your fish. test kits and regularly check the water for ammonia, nitrite, nitrate and pH. This will allow you to make sure the water in You are aware of the daily, weekly and monthly 4 your aquarium is not causing welfare problems for your fish. maintenance your aquarium will require. Establish a routine... 5 You are prepared to look after your fish properly for for testing the water in your aquarium. Record your results the duration of their life. to enable you to highlight fluctuations quickly. Also check 36 Tropical freshwater fish the temperature of the water. Equipment Maintain... 1 Glass or plastic aquarium the water in the aquarium within the accepted parameters highlighted in this leaflet. You may need to do regular water Gravel cleaner 2 changes to achieve this. 3 Water testing kit Always wash your hands... 4 Tap water conditioner making sure to rinse off all soap residues, before putting them into your aquarium. -
FAMILY Balitoridae Swainson, 1839
FAMILY Balitoridae Swainson, 1839 - hillstream and river loaches [=Balitorinae, Homalopterini, Sinohomalopterini, Homalopteroidini] GENUS Balitora Gray, 1830 - stone loaches [=Sinohomaloptera] Species Balitora annamitica Kottelat, 1988 - annamitica stone loach Species Balitora brucei Gray, 1830 - Gray's stone loach [=anisura, maculata] Species Balitora burmanica Hora, 1932 - Burmese stone loach [=melanosoma] Species Balitora chipkali Kumar et al., 2016 - Kali stone loach Species Balitora eddsi Conway & Mayden, 2010 - Gerwa River stone loach Species Balitora elongata Chen & Li, in Li & Chen, 1985 - elongate stone loach Species Balitora haithanhi Nguyen, 2005 - Gam River stone loach Species Balitora jalpalli Raghavan et al., 2013 - Silent Valley stone loach Species Balitora kwangsiensis (Fang, 1930) - Kwangsi stone loach [=heteroura, hoffmanni, nigrocorpa, songamensis] Species Balitora lancangjiangensis (Zheng, 1980) - Lancangjiang stone loach Species Balitora laticauda Bhoite et al., 2012 - Krishna stone loach Species Balitora longibarbata (Chen, in Zheng et al., 1982) - Yiliang Xian stone loach Species Balitora ludongensis Liu & Chen, in Liu et al., 2012 - Qilong River stone loach Species Balitora meridionalis Kottelat, 1988 - Chan River stone loach Species Balitora mysorensis Hora, 1941 - slender stone loach Species Balitora nantingensis Chen et al., 2005 - Nanting River stone loach Species Balitora nujiangensis Zhang & Zheng, in Zheng & Zhang, 1983 - Nu-Jiang stone loach Species Balitora tchangi Zheng, in Zheng et al., 1982 - Tchang -
Four New Records of Fish Species (Cypriniformes: Nemacheilidae
Zoological Research 35 (1): 51−58 DOI:10.11813/j.issn.0254-5853.2014.1.051 Four new records of fish species (Cypriniformes: Nemacheilidae, Balitoridae; Characiformes: Prochilodontidae) and corrections of two misidentified fish species (Tetraodontiformes: Tetraodontidae; Beloniformes: Belonidae) in Yunnan, China Marco Endruweit* Qingshan Road 601, Qingdao, China Abstract: In this study, six fish species of five families are reported for the first time from Yunnan Province, China. The nemacheilid Schistura amplizona Kottelat, 2000 is reported from the Luosuojiang River and Nanlahe River subbasins, Mekong basin; the prochilodontid Prochilodus lineatus (Valenciennes, 1837), the balitorid Vanmanenia serrilineata Kottelat, 2000, and the tetraodontid Monotrete turgidus Kottelat, 2000, from Nanlahe River subbasin, Mekong basin; the balitorid Beaufortia daon (Mai, 1978), and the belonid Xenentodon canciloides (Bleeker, 1854), both, from Black River subbasin, Red River basin. The freshwater puffer M. turgidus and the needlefish X. canciloides have been previously misidentified as Tetraodon leiurus (Bleeker, 1950) and Tylosurus strongylurus (van Hasselt, 1823), respectively. Keywords: New record; Misidentification; Mekong basin; Red River; Yunnan Yunnan Province is located in the Southwest within Chen et al in 1989, respectively 1990 for the second the People’s Republic of China. Its name refers to its volume, giving 226 species and subspecies accounts in location south of the Yunling Mountain range. It shares the first volume plus an additional 173 in the second. international border with Myanmar in the West and Through extensive fieldwork and re-evaluation of Southwest, with Laos and Vietnam in the South; national institutionally stored lots the number of Yunnanese fish borders with Xizang Autonomous Region to the species is growing (for e.g. -
Diet of Leptobotia Elongata Revealed by Stomach Content Analysis and Inferred from Stable Isotope Signatures
Environ Biol Fish (2015) 98:1965–1978 DOI 10.1007/s10641-015-0414-4 Diet of Leptobotia elongata revealed by stomach content analysis and inferred from stable isotope signatures L. Li & Q. Wei Wei & J. Ming Wu & H. Zhang & Y. Liu & X. Xie Received: 4 July 2014 /Accepted: 16 April 2015 /Published online: 8 May 2015 # Springer Science+Business Media Dordrecht 2015 Abstract The diet of Leptobotia elongata in the Yibin shift to piscivory at c.110 mm standard length was found reach of the Yangtze River, China was investigated by using the stable isotope mixing model to reveal dietary stomach content analysis and by stable isotope analysis ontogeny by IsoSource software, and the trend in varia- from muscle. The results of the two methods were agree- tion of the δ13Candδ15N was similar with increased ment. Both stomach contents and isotope analysis indi- body length, and the plankton is important prey item in cated that L. elongata fedinspringmainlyonplankton, all size classes. The δ13Candδ15Nvaluesinsimilar shrimp and fish, and secondarily on benthic invertebrates sized individuals showed significant seasonal differences and aquatic insect larvae. For the stomach content anal- (δ13C, ANOVA, F=76.33,p<0.001 and δ15N, ANOVA, ysis, the diet composition showed significant differences F=144.56, p<0.001), indicating a temporal dietary and among the size classes in relative weight of prey items, trophic level shift. L. elongata is an important commer- with L. elongata changing feeding habits at c.110 mm cial species, and the results of the study form part of a standard length. The smaller individuals fed on benthic detailed investigation of feeding ecology of L. -
Evolution and Phylogenetic Application of the MC1R Gene in the Cobitoidea (Teleostei: Cypriniformes)
ZOOLOGICAL RESEARCH Evolution and phylogenetic application of the MC1R gene in the Cobitoidea (Teleostei: Cypriniformes) Qiong-Ying TANG1,*, Li-Xia SHI1,2, Fei LIU1, Dan YU1, Huan-Zhang LIU1,* 1 The Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China 2 University of Chinese Academy of Sciences, Beijing 100049, China ABSTRACT INTRODUCTION Fish of the superfamily Cobitoidea sensu stricto (namely loaches) exhibit extremely high diversity of The superfamily Cobitoidea is a group of small- to medium- color patterns, but so far little is known about their sized benthic fish, composed of approximately 28% of species evolutionary mechanism. Melanocortin 1 receptor of the order Cypriniformes, which is the largest group of gene (MC1R) plays an important role during the freshwater fish in the world (Nelson et al., 2016). Depending on synthesis of melanin and formation of animal body different authors, Cobitoidea includes variable families. Bohlen color patterns. In this study, we amplified and sequenced the partial MC1R gene for 44 loach & Šlechtová (2009) and Chen et al. (2009) congruently individuals representing 31 species of four families. recognized the genus Ellopostoma as a distinct new family Phylogenetic analyses yielded a topology congruent Ellopostomatidae, and proposed that Cobitoidea is composed with previous studies using multiple nuclear loci, of eight families (Catostomidae, Gyrinocheilidae, Botiidae, showing that each of the four families was Vaillantellidae, Cobitidae, Ellopostomatidae, Nemacheilidae and monophyletic with sister relationships of Botiidae+ Balitoridae). Kottelat (2012) raised genera Serpenticobitis and (Cobitidae+(Balitoridae+Nemacheilidae)). Gene Barbucca to family rank, and established Serpenticobitidae and evolutionary analyses indicated that MC1R in Barbuccidae. -
PHYLOGENY and ZOOGEOGRAPHY of the SUPERFAMILY COBITOIDEA (CYPRINOIDEI, Title CYPRINIFORMES)
PHYLOGENY AND ZOOGEOGRAPHY OF THE SUPERFAMILY COBITOIDEA (CYPRINOIDEI, Title CYPRINIFORMES) Author(s) SAWADA, Yukio Citation MEMOIRS OF THE FACULTY OF FISHERIES HOKKAIDO UNIVERSITY, 28(2), 65-223 Issue Date 1982-03 Doc URL http://hdl.handle.net/2115/21871 Type bulletin (article) File Information 28(2)_P65-223.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP PHYLOGENY AND ZOOGEOGRAPHY OF THE SUPERFAMILY COBITOIDEA (CYPRINOIDEI, CYPRINIFORMES) By Yukio SAWADA Laboratory of Marine Zoology, Faculty of Fisheries, Bokkaido University Contents page I. Introduction .......................................................... 65 II. Materials and Methods ............... • • . • . • . • • . • . 67 m. Acknowledgements...................................................... 70 IV. Methodology ....................................•....•.........•••.... 71 1. Systematic methodology . • • . • • . • • • . 71 1) The determinlttion of polarity in the morphocline . • . 72 2) The elimination of convergence and parallelism from phylogeny ........ 76 2. Zoogeographical methodology . 76 V. Comparative Osteology and Discussion 1. Cranium.............................................................. 78 2. Mandibular arch ...................................................... 101 3. Hyoid arch .......................................................... 108 4. Branchial apparatus ...................................•..••......••.. 113 5. Suspensorium.......................................................... 120 6. Pectoral -
Photo Images, 3D Models and CT Scanned Data of Loaches (Botiidae, Cobitidae and Nemacheilidae) of Japan
Biodiversity Data Journal 6: e26265 doi: 10.3897/BDJ.6.e26265 Data Paper Photo images, 3D models and CT scanned data of loaches (Botiidae, Cobitidae and Nemacheilidae) of Japan Yuichi Kano‡§, Jun Nakajima , Takeshi Yamasaki|, Jyun-ichi Kitamura¶#, Ryoichi Tabata ‡ Kyushu University, Fukuoka, Japan § Fukuoka Institute of Health and Environmental Sciences, Dazaifu, Japan | Yamashina Institute for Ornithology, Konoyama, Japan ¶ Mie Prefectural Museum, Tsu, Japan # Lake Biwa Museum, Kusatsu, Japan Corresponding author: Yuichi Kano ([email protected]) Academic editor: Yasen Mutafchiev Received: 29 Apr 2018 | Accepted: 11 Jun 2018 | Published: 09 Jul 2018 Citation: Kano Y, Nakajima J, Yamasaki T, Kitamura J, Tabata R (2018) Photo images, 3D models and CT scanned data of loaches (Botiidae, Cobitidae and Nemacheilidae) of Japan. Biodiversity Data Journal 6: e26265. https://doi.org/10.3897/BDJ.6.e26265 ZooBank: urn:lsid:zoobank.org:pub:997E6DE7-09B7-4352-9D78-861689F018DC Abstract Background Loach is one of the major cypriniform fishes in freshwater habitats of Japan; 35 taxa/clades have, until now, been recognised. Parallel to genetic studies, morphological examinations are needed for further development of loach study, eventually ichthyology and fish biology. Digital archiving, concerning taxonomy, ecology, ethology etc., is one of the progressive challenges for the open science of biology. This paper aimed to online publish photo images, 3D models and CT scanned data of all the known clades of loaches inhabiting Japan (103 individuals in total with several type specimens), contributing to ichthyology and public interest of biodiversity/biology. © Kano Y et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. -
Central Marine Fisheries Research Institute P.B.No.1603, Cochin - 682 018, Kerala
Contents of Selected Journals Vol. 1 No.11 November 2011 Library & Documentation Central Marine Fisheries Research Institute P.B.No.1603, Cochin - 682 018, Kerala Contents of Selected Journals November 2011 Compiled V. Edwin Joseph P. Geetha Library & Documentation CMFRI, Cochin – 18 Contents Sl.No. Title Vol./No. Mon./Yr Page No. 1 Aquaculture 319 (3-4) Oct ‘11 1-2 2 Aquaculture 320 (1-2) Oct ‘11 3-4 3 Aquaculture International 19 (5) Oct ‘11 5-6 4 Aquaculture Nutrition 17 (5) Oct ‘11 7 5 Aquaculture Research 42 (10) Sep ‘11 8 6 Aquaculture Research 42 (11) Oct ‘11 9 7 Canadian J. of Fisheries & Aq. Sciences 68 (6) Jun ‘11 10-11 8 Canadian J. of Fisheries & Aq. Sciences 68 (7) Jul ‘11 12-13 9 Crustaceana 84 (8) Jul ‘11 14 10 Crustaceana 84 (9) Aug ‘11 15-16 11 Crustaceana 84 (10) Sep ‘11 17-18 12 Fisheries Management and Ecology 18 (5) Oct ‘11 19 13 Fisheries Research 111 (3) Nov ‘11 20 14 Fisheries Science 77 (3) May ‘11 21 15 Fishing Chimes 31 (7) Oct ‘11 22 16 Global Aquaculture Advocate 14 (5) Sep/Oct ‘11 23 17 ICES Journal of Marine Sciences 68 (8) Sep ‘11 24-26 18 ICES Journal of Marine Sciences 68 (9) Sep ‘11 27 19 Ichthyological Research 58 (2) Apr ‘11 28 20 Ichthyological Research 58 (3) Jul ‘11 29 21 Journal of Fish Biology 79 (4) Oct ‘11 30-31 22 Journal of Fish Diseases 34 (10) Oct ‘11 32 23 Marine Resource Economics 26 (2) 2011 33 24 North American Journal of Aquaculture 73 (3) Jul ‘11 34 25 North American Journal of Fisheries 31 (4) Aug ‘11 35 Management New Additions to Library 1. -
Khu Hệ Cá Nội Địa Vùng Thừa Thiên Huế
ĐẠI HỌC HUẾ TRƢỜNG ĐẠI HỌC SƢ PHẠM NGUYỄN DUY THUẬN KHU HỆ CÁ NỘI ĐỊA VÙNG THỪA THIÊN HUẾ LUẬN ÁN TIẾN SĨ SINH HỌC Huế, năm 2019 ĐẠI HỌC HUẾ TRƢỜNG ĐẠI HỌC SƢ PHẠM NGUYỄN DUY THUẬN KHU HỆ CÁ NỘI ĐỊA VÙNG THỪA THIÊN HUẾ Chuyên ngành: Động vật học Mã số: 9.42.01.03 LUẬN ÁN TIẾN SĨ SINH HỌC Ngƣời hƣớng dẫn khoa học: PGS.TS. VÕ VĂN PHÖ Huế, năm 2019 LỜI CAM ĐOAN Xin cam đoan đây là công trình nghiên cứu của riêng tôi dƣới sự hƣớng dẫn của thầy giáo PGS.TS. Võ Văn Phú. Các số liệu và kết quả nghiên cứu nêu trong luận án là trung thực, đƣợc các đồng tác giả cho phép sử dụng và chƣa từng đƣợc công bố trong bất kỳ một công trình nào khác. Những trích dẫn về bảng biểu, kết quả nghiên cứu của những tác giả khác, tài liệu sử dụng trong luận án đều có nguồn gốc rõ ràng và trích dẫn theo đúng quy định. Thừa Thiên Huế, ngày tháng năm 2019 Tác giả luận án Nguyễn Duy Thuận i LỜI CẢM ƠN Hoàn thành luận án này, tôi xin bày tỏ lòng biết ơn sâu sắc đến thầy giáo PGS.TS. Võ Văn Phú, Khoa Sinh học, Trƣờng Đại học Khoa học, Đại học Huế, ngƣời Thầy đã tận tình chỉ bảo, hƣớng dẫn trong suốt quá trình học tập, nghiên cứu và hoàn thành luận án. Tôi xin phép đƣợc gửi lời cảm ơn chân thành đến tập thể Giáo sƣ, Phó giáo sƣ, Tiến sĩ - những ngƣời Thầy trong Bộ môn Động vật học và Khoa Sinh học, Trƣờng Đại học Sƣ phạm, Đại học Huế đã cho tôi những bài học cơ bản, những kinh nghiệm trong nghiên cứu, truyền cho tôi tinh thần làm việc nghiêm túc, đã cho tôi nhiều ý kiến chỉ dẫn quý báu trong quá trình thực hiện đề tài luận án.