Diet of Leptobotia Elongata Revealed by Stomach Content Analysis and Inferred from Stable Isotope Signatures
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Dynamic Genetic Diversity and Population Structure of Coreius Guichenoti
ZooKeys 1055: 135–148 (2021) A peer-reviewed open-access journal doi: 10.3897/zookeys.1055.70117 RESEARCH ARTICLE https://zookeys.pensoft.net Launched to accelerate biodiversity research Dynamic genetic diversity and population structure of Coreius guichenoti Dongqi Liu1*, Feng Lan2*, Sicai Xie1, Yi Diao1, Yi Zheng1, Junhui Gong1 1 Sichuan Province Key Laboratory of Characteristic Biological Resources of Dry and Hot River Valley, Pan- zhihua University, Panzhihua, 617000, China 2 Upper Changjiang River Burean of Hydrological and Water Resources Survey, Chongqing, 400000, China Corresponding author: Feng Lan ([email protected]) Academic editor: M.E. Bichuette | Received 14 June 2021 | Accepted 27 July 2021 | Published 11 August 2021 http://zoobank.org/ADECA19A-B689-47AE-971B-42913F28F5CE Citation: Liu D, Lan F, Xie S, Diao Y, Zheng Y, Gong J (2021) Dynamic genetic diversity and population structure of Coreius guichenoti. ZooKeys 1055: 135–148. https://doi.org/10.3897/zookeys.1055.70117 Abstract To investigate the genetic effects on the population of Coreius guichenoti of dam constructions in the upper reaches of the Yangtze River, we analyzed the genetic diversity and population structure of 12 popula- tions collected in 2009 and 2019 using mitochondrial DNA (mtDNA) control regions. There was no significant difference in genetic diversity between 2009 and 2019P ( > 0.05), but the population structure tended to become stronger. Genetic differentiation (FST) among five populations (LX, BB, YB, SF and JA) collected in 2009 was not significant P( > 0.05). However, some populations collected in 2019 were significantly differentiated (P < 0.05), indicating that the population structure has undergone change. -
Comparison of Evolutionary Rates in the Mitochondrial DNA Cytochrome B Gene and Control Region and Their Implications for Phylog
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Institute of Hydrobiology, Chinese Academy Of Sciences Molecular Phylogenetics and Evolution 39 (2006) 347–357 www.elsevier.com/locate/ympev Comparison of evolutionary rates in the mitochondrial DNA cytochrome b gene and control region and their implications for phylogeny of the Cobitoidea (Teleostei: Cypriniformes) Qiongying Tang a,b, Huanzhang Liu a,¤, Richard Mayden c, Bangxi Xiong b a Institute of Hydrobiology, Chinese Academy of Sciences, Hubei, Wuhan 430072, PR China b College of Fishery, Huazhong Agricultural University, Hubei, Wuhan 430070, PR China c Department of Biology, Saint Louis University, 3507 Laclede Ave., St. Louis, MO 63103-2010, USA Received 6 July 2005; revised 15 August 2005; accepted 18 August 2005 Available online 4 October 2005 Abstract It is widely accepted that mitochondrial DNA (mtDNA) control region evolves faster than protein encoding genes with few excep- tions. In the present study, we sequenced the mitochondrial cytochrome b gene (cyt b) and control region (CR) and compared their rates in 93 specimens representing 67 species of loaches and some related taxa in the Cobitoidea (Order Cypriniformes). The results showed that sequence divergences of the CR were broadly higher than those of the cyt b (about 1.83 times). However, in considering only closely related species, CR sequence evolution was slower than that of cyt b gene (ratio of CR/cyt b is 0.78), a pattern that is found to be very common in Cypriniformes. Combined data of the cyt b and CR were used to estimate the phylogenetic relationship of the Cobitoidea by maximum parsimony, neighbor-joining, and Bayesian methods. -
A Functional-Morphological Study on the Attachment, Respiration and Feeding Mechanisms in Balitorinae (Balitoridae, Teleostei)
Faculty of Sciences Department of Biology Research group: Evolutionary Morphology of Vertebrates Academic year 2012-2013 A functional-morphological study on the attachment, respiration and feeding mechanisms in Balitorinae (Balitoridae, Teleostei) De Meyer Jens Supervisor: Dr. Tom Geerinckx Thesis submitted to obtain the degree of Tutor: Dr. Tom Geerinckx Master in Biology II © Faculty of Sciences – Evolutionary Morphology of Vertebrates Deze masterproef bevat vertrouwelijk informatie en vertrouwelijke onderzoeksresultaten die toebehoren aan de UGent. De inhoud van de masterproef mag onder geen enkele manier publiek gemaakt worden, noch geheel noch gedeeltelijk zonder de uitdrukkelijke schriftelijke voorafgaandelijke toestemming van de UGent vertegenwoordiger, in casu de promotor. Zo is het nemen van kopieën of het op eender welke wijze dupliceren van het eindwerk verboden, tenzij met schriftelijke toestemming. Het niet respecteren van de confidentiële aard van het eindwerk veroorzaakt onherstelbare schade aan de UGent. Ingeval een geschil zou ontstaan in het kader van deze verklaring, zijn de rechtbanken van het arrondissement Gent uitsluitend bevoegd daarvan kennis te nemen. All rights reserved. This thesis contains confidential information and confidential research results that are property to the UGent. The contents of this master thesis may under no circumstances be made public, nor complete or partial, without the explicit and preceding permission of the UGent representative, i.e. the supervisor. The thesis may under no circumstances be copied or duplicated in any form, unless permission granted in written form. Any violation of the confidential nature of this thesis may impose irreparable damage to the UGent. In case of a dispute that may arise within the context of this declaration, the Judicial Court of© All rights reserved. -
Phylogenetic Position of the Fish Genus Ellopostoma (Teleostei: Cypriniformes) Using Molecular Genetic Data
157 Ichthyol. Explor. Freshwaters, Vol. 20, No. 2, pp. 157-162, 2 figs., June 2009 © 2009 by Verlag Dr. Friedrich Pfeil, München, Germany – ISSN 0936-9902 Phylogenetic position of the fish genus Ellopostoma (Teleostei: Cypriniformes) using molecular genetic data Jörg Bohlen* and Vendula Šlechtová* We investigated the phylogenetic position of Ellopostoma based on nuclear sequence data (RAG-1 gene). Ellopo- stoma is a member of the superfamily Cobitoidea (loaches) of Cypriniformes, but does not belong to any of the currently recognised families. It represents an independent lineage, recognised as a distinct new family Ellopo- stomatidae, characterized by a squarish and oblique snout, a minute protrusible mouth, a single pair of barbels, large eyes and 35-38 pharyngeal teeth. Introduction middle stretches of the Kapuas River in western Borneo. It is only in 1976 that the species was With about 3800 recognised species, the freshwa- collected again, also in the Kapuas (Roberts, 1989). ter fish order Cypriniformes (Osteichthyes: Tele- Kottelat (1989) recorded the presence of an un- ostei) is one of the largest recognised to date named Ellopostoma from the Malay Peninsula among vertebrates. It is divided into two main [Tapi River, Thailand], later described by Tan & lineages, the superfamilies Cyprinoidea (carps, Lim (2002) as E. mystax. Kottelat & Widjanarti minnows and related fishes) and Cobitoidea (2005) provide additional records of E. megalo- (loaches and related fishes) (Nelson, 2006). With- mycter, also in the Kapuas drainage. in Cobitoidea seven lineages are recognizable Because of its unique morphological features, (called families by e. g., Šlechtová et al., 2007; Chen the phylogenetic position of Ellopostoma has been & Mayden, 2009). -
Evolution and Phylogenetic Application of the MC1R Gene in the Cobitoidea (Teleostei: Cypriniformes)
ZOOLOGICAL RESEARCH Evolution and phylogenetic application of the MC1R gene in the Cobitoidea (Teleostei: Cypriniformes) Qiong-Ying TANG1,*, Li-Xia SHI1,2, Fei LIU1, Dan YU1, Huan-Zhang LIU1,* 1 The Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China 2 University of Chinese Academy of Sciences, Beijing 100049, China ABSTRACT INTRODUCTION Fish of the superfamily Cobitoidea sensu stricto (namely loaches) exhibit extremely high diversity of The superfamily Cobitoidea is a group of small- to medium- color patterns, but so far little is known about their sized benthic fish, composed of approximately 28% of species evolutionary mechanism. Melanocortin 1 receptor of the order Cypriniformes, which is the largest group of gene (MC1R) plays an important role during the freshwater fish in the world (Nelson et al., 2016). Depending on synthesis of melanin and formation of animal body different authors, Cobitoidea includes variable families. Bohlen color patterns. In this study, we amplified and sequenced the partial MC1R gene for 44 loach & Šlechtová (2009) and Chen et al. (2009) congruently individuals representing 31 species of four families. recognized the genus Ellopostoma as a distinct new family Phylogenetic analyses yielded a topology congruent Ellopostomatidae, and proposed that Cobitoidea is composed with previous studies using multiple nuclear loci, of eight families (Catostomidae, Gyrinocheilidae, Botiidae, showing that each of the four families was Vaillantellidae, Cobitidae, Ellopostomatidae, Nemacheilidae and monophyletic with sister relationships of Botiidae+ Balitoridae). Kottelat (2012) raised genera Serpenticobitis and (Cobitidae+(Balitoridae+Nemacheilidae)). Gene Barbucca to family rank, and established Serpenticobitidae and evolutionary analyses indicated that MC1R in Barbuccidae. -
PHYLOGENY and ZOOGEOGRAPHY of the SUPERFAMILY COBITOIDEA (CYPRINOIDEI, Title CYPRINIFORMES)
PHYLOGENY AND ZOOGEOGRAPHY OF THE SUPERFAMILY COBITOIDEA (CYPRINOIDEI, Title CYPRINIFORMES) Author(s) SAWADA, Yukio Citation MEMOIRS OF THE FACULTY OF FISHERIES HOKKAIDO UNIVERSITY, 28(2), 65-223 Issue Date 1982-03 Doc URL http://hdl.handle.net/2115/21871 Type bulletin (article) File Information 28(2)_P65-223.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP PHYLOGENY AND ZOOGEOGRAPHY OF THE SUPERFAMILY COBITOIDEA (CYPRINOIDEI, CYPRINIFORMES) By Yukio SAWADA Laboratory of Marine Zoology, Faculty of Fisheries, Bokkaido University Contents page I. Introduction .......................................................... 65 II. Materials and Methods ............... • • . • . • . • • . • . 67 m. Acknowledgements...................................................... 70 IV. Methodology ....................................•....•.........•••.... 71 1. Systematic methodology . • • . • • . • • • . 71 1) The determinlttion of polarity in the morphocline . • . 72 2) The elimination of convergence and parallelism from phylogeny ........ 76 2. Zoogeographical methodology . 76 V. Comparative Osteology and Discussion 1. Cranium.............................................................. 78 2. Mandibular arch ...................................................... 101 3. Hyoid arch .......................................................... 108 4. Branchial apparatus ...................................•..••......••.. 113 5. Suspensorium.......................................................... 120 6. Pectoral -
5Th Indo-Pacific Fish Conference
)tn Judo - Pacifi~ Fish Conference oun a - e II denia ( vernb ~ 3 - t 1997 A ST ACTS Organized by Under the aegis of L'Institut français Société de recherche scientifique Française pour le développement d'Ichtyologie en coopération ' FI Fish Conference Nouméa - New Caledonia November 3 - 8 th, 1997 ABSTRACTS LATE ARRIVAL ZOOLOGICAL CATALOG OF AUSTRALIAN FISHES HOESE D.F., PAXTON J. & G. ALLEN Australian Museum, Sydney, Australia Currently over 4000 species of fishes are known from Australia. An analysis ofdistribution patterns of 3800 species is presented. Over 20% of the species are endemic to Australia, with endemic species occuiring primarily in southern Australia. There is also a small component of the fauna which is found only in the southwestern Pacific (New Caledonia, Lord Howe Island, Norfolk Island and New Zealand). The majority of the other species are widely distributed in the western Pacific Ocean. AGE AND GROWTH OF TROPICAL TUNAS FROM THE WESTERN CENTRAL PACIFIC OCEAN, AS INDICATED BY DAILY GROWm INCREMENTS AND TAGGING DATA. LEROY B. South Pacific Commission, Nouméa, New Caledonia The Oceanic Fisheries Programme of the South Pacific Commission is currently pursuing a research project on age and growth of two tropical tuna species, yellowfm tuna (Thunnus albacares) and bigeye tuna (Thunnus obesus). The daily periodicity of microincrements forrned with the sagittal otoliths of these two spceies has been validated by oxytetracycline marking in previous studies. These validation studies have come from fishes within three regions of the Pacific (eastem, central and western tropical Pacific). Otolith microincrements are counted along transverse section with a light microscope. -
BMC Evolutionary Biology Biomed Central
BMC Evolutionary Biology BioMed Central Research article Open Access Evolution of miniaturization and the phylogenetic position of Paedocypris, comprising the world's smallest vertebrate Lukas Rüber*1, Maurice Kottelat2, Heok Hui Tan3, Peter KL Ng3 and Ralf Britz1 Address: 1Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, UK, 2Route de la Baroche 12, Case postale 57, CH-2952 Cornol, Switzerland (permanent address) and Raffles Museum of Biodiversity Research, National University of Singapore, Kent Ridge, Singapore 119260 and 3Department of Biological Sciences, National University of Singapore, Kent Ridge, Singapore 119260 Email: Lukas Rüber* - [email protected]; Maurice Kottelat - [email protected]; Heok Hui Tan - [email protected]; Peter KL Ng - [email protected]; Ralf Britz - [email protected] * Corresponding author Published: 13 March 2007 Received: 23 October 2006 Accepted: 13 March 2007 BMC Evolutionary Biology 2007, 7:38 doi:10.1186/1471-2148-7-38 This article is available from: http://www.biomedcentral.com/1471-2148/7/38 © 2007 Rüber et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Paedocypris, a highly developmentally truncated fish from peat swamp forests in Southeast Asia, comprises the world's smallest vertebrate. Although clearly a cyprinid fish, a hypothesis about its phylogenetic position among the subfamilies of this largest teleost family, with over 2400 species, does not exist. -
Evolution and Water Resources Utilization of the Yangtze River Evolution and Water Resources Utilization of the Yangtze River Jin Chen
Jin Chen Evolution and Water Resources Utilization of the Yangtze River Evolution and Water Resources Utilization of the Yangtze River Jin Chen Evolution and Water Resources Utilization of the Yangtze River Jin Chen Changjiang Water Resources Commission Changjiang River Science Research Institute Wuhan, Hubei, China The edition is not for sale in the Mainland of China. Customers from the Mainland of China, please order the print book from: Changjiang Press (Wuhan) Co.,Ltd. ISBN 978-981-13-7871-3 ISBN 978-981-13-7872-0 (eBook) https://doi.org/10.1007/978-981-13-7872-0 © Changjiang Press (Wuhan) Co.,Ltd. & Springer Nature Singapore Pte Ltd. 2020 This work is subject to copyright. All rights are reserved by the Publishers, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publishers, the authors, and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publishers nor the authors or the editors give a warranty, express or implied, with respect to the material contained herein or for any errors or omissions that may have been made. -
Development of Microsatellite Markers for Leptobotia Elongata (Cypriniformes: Cobitidae) Using 454 Sequencing and Cross-Species Amplification
Pakistan J. Zool., vol. 46(4), pp. 1147-1151, 2014. Development of Microsatellite Markers for Leptobotia elongata (Cypriniformes: Cobitidae) Using 454 Sequencing and Cross-species Amplification Dongqi Liu1, Jiayun Wu1, Longjun Deng2, Weixiong Gan2, Lianming Du1 and Zhaobin Song1,3* 1Sichuan Key Laboratory of Conservation Biology on Endangered Wildlife, College of Life Sciences, Sichuan University, Chengdu 610065, P. R. China 2Yalong River Hydropower Development Company, Ltd. Chengdu 610051, P. R. China 3Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610065, P. R. China Abstract.- Thirty microsatellite markers were developed from Leptobotia elongata through 454 sequencing and 27 were polymorphic among 24 individuals, with an average of 9.67 alleles per locus, and the mean observed and expected heterozygosities were 0.81 and 0.79, respectively. Polymorphism information content (PIC) ranged from 0.416 to 0.933. In addition, cross-species amplification was tested for all 30 loci in four other loaches of Cobitidae (Leptobotia microphthalma, Botia superciliaris), and Nemacheilidae (Oreias dabryi, Triplophysa stenura). The results showed a significant high level of transferability (63%–97%), which means the possibility of these markers applying to other related species. The microsatellite loci described here would be useful in conservation of L. elongata and possibly some other species. Keywords: Leptobotia elongate, microsatellite markers, next-generation sequencing, cross-species amplification, polymorphism information content. INTRODUCTION develop molecular markers used to population and conservation genetic studies for this endangered species. Leptobotia elongata (Cypriniformes: The traditional process of developing Cobitidae) is an important fish species endemic to genomic microsatellite markers is time consumption China with high ornamental and edible value. -
Guam Marine Biosecurity Action Plan
GuamMarine Biosecurity Action Plan September 2014 This Marine Biosecurity Action Plan was prepared by the University of Guam Center for Island Sustainability under award NA11NOS4820007 National Oceanic and Atmospheric Administration Coral Reef Conservation Program, as administered by the Office of Ocean and Coastal Resource Management and the Bureau of Statistics and Plans, Guam Coastal Management Program. The statements, findings, conclusions, and recommendations are those of the author(s) and do not necessarily reflect the views of the National Oceanic and Atmospheric Administration. Guam Marine Biosecurity Action Plan Author: Roxanna Miller First Released in Fall 2014 About this Document The Guam Marine Biosecurity Plan was created by the University of Guam’s Center for Island Sustainability under award NA11NOS4820007 National Oceanic and Atmospheric Administration Coral Reef Conservation Program, as administered by the Office of Ocean and Coastal Resource Management and the Bureau of Statistics and Plans, Guam Coastal Management Program. Information and recommendations within this document came through the collaboration of a variety of both local and federal agencies, including the National Oceanic and Atmospheric Administration (NOAA) National Marine Fisheries Service (NMFS), the NOAA Coral Reef Conservation Program (CRCP), the University of Guam (UOG), the Guam Department of Agriculture’s Division of Aquatic and Wildlife Resources (DAWR), the United States Coast Guard (USCG), the Port Authority of Guam, the National Park Service -
Bulletin on the Ecological and Environmental Monitoring Results of the Three Gorges Project 2004
Bulletin On the Ecological and Environmental Monitoring Results of the Three Gorges Project 2004 State Environmental Protection Administration May 2004 Content Summary..........................................................................................................................................1 Chapter 1 Progress of the Three Gorges Project..........................................................................2 Chapter 2 Economic and Social Development..............................................................................3 2.1 Population, Society and Economy ..........................................................................................3 2.2 Migration Settlement...............................................................................................................4 Chapter 3 State of the Natural Ecological Environment .............................................................6 3.1 Climate....................................................................................................................................6 3.2 Terrestrial Plants......................................................................................................................9 3.3 Terrestrial Animals..................................................................................................................9 3.4 Fishery Resources and Environment.....................................................................................10 3.5 Peculiar Fishes and Rare Aquatic Animals ...........................................................................13