bioRxiv preprint doi: https://doi.org/10.1101/828269; this version posted November 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 1 Profiling the effects of rifaximin on the healthy human colonic microbiota using a 2 chemostat model 3 4 Ines B. Mouraa#, Anthony M. Buckleya, Duncan Ewina, Emma Clarka, Suparna Mitraa, Mark 5 H. Wilcoxa,b, Caroline H. Chiltona 6 7 aLeeds Institute of Medical Research, Faculty of Medicine and Health, University of Leeds, 8 Leeds, UK; 9 bDepartment of Microbiology, Leeds Teaching Hospitals NHS Trust, The General Infirmary, 10 Leeds, UK 11 12 Keywords: Rifaximin, gut microbiota, chemostat model, 16S rRNA sequencing 13 14 # Corresponding Author: Dr Ines Moura 15 Healthcare Associated Infection Research Group 16 Leeds Institute of Medical Research 17 University of Leeds 18 Microbiology, Old Medical School 19 Leeds General Infirmary 20 Leeds LS1 3EX, UK 21 Tel +44 113 392 8663 22 Email:
[email protected] 23 24 25 bioRxiv preprint doi: https://doi.org/10.1101/828269; this version posted November 1, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 2 26 Abstract 27 28 Rifaximin is a low solubility antibiotic with activity against a wide range of bacterial 29 pathogens.