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Phylogenetic Relationships of Ruteae (Rutaceae): New Evidence from the Chloroplast Genome and Comparisons with Non-Molecular Data
ARTICLE IN PRESS Molecular Phylogenetics and Evolution xxx (2008) xxx–xxx Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenetic relationships of Ruteae (Rutaceae): New evidence from the chloroplast genome and comparisons with non-molecular data Gabriele Salvo a,*, Gianluigi Bacchetta b, Farrokh Ghahremaninejad c, Elena Conti a a Institute of Systematic Botany, University of Zürich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland b Center for Conservation of Biodiversity (CCB), Department of Botany, University of Cagliari, Viale S. Ignazio da Laconi 13, 09123 Cagliari, Italy c Department of Biology, Tarbiat Moallem University, 49 Dr. Mofatteh Avenue, 15614 Tehran, Iran article info abstract Article history: Phylogenetic analyses of three cpDNA markers (matK, rpl16, and trnL–trnF) were performed to evaluate Received 12 December 2007 previous treatments of Ruteae based on morphology and phytochemistry that contradicted each other, Revised 14 July 2008 especially regarding the taxonomic status of Haplophyllum and Dictamnus. Trees derived from morpho- Accepted 9 September 2008 logical, phytochemical, and molecular datasets of Ruteae were then compared to look for possible pat- Available online xxxx terns of agreement among them. Furthermore, non-molecular characters were mapped on the molecular phylogeny to identify uniquely derived states and patterns of homoplasy in the morphological Keywords: and phytochemical datasets. The phylogenetic analyses determined that Haplophyllum and Ruta form Ruta reciprocally exclusive monophyletic groups and that Dictamnus is not closely related to the other genera Citrus family Morphology of Ruteae. The different types of datasets were partly incongruent with each other. The discordant phy- Phytochemistry logenetic patterns between the phytochemical and molecular trees might be best explained in terms of Congruence convergence in secondary chemical compounds. -
Diversity of the Mountain Flora of Central Asia with Emphasis on Alkaloid-Producing Plants
diversity Review Diversity of the Mountain Flora of Central Asia with Emphasis on Alkaloid-Producing Plants Karimjan Tayjanov 1, Nilufar Z. Mamadalieva 1,* and Michael Wink 2 1 Institute of the Chemistry of Plant Substances, Academy of Sciences, Mirzo Ulugbek str. 77, 100170 Tashkent, Uzbekistan; [email protected] 2 Institute of Pharmacy and Molecular Biotechnology, Heidelberg University, Im Neuenheimer Feld 364, 69120 Heidelberg, Germany; [email protected] * Correspondence: [email protected]; Tel.: +9-987-126-25913 Academic Editor: Ipek Kurtboke Received: 22 November 2016; Accepted: 13 February 2017; Published: 17 February 2017 Abstract: The mountains of Central Asia with 70 large and small mountain ranges represent species-rich plant biodiversity hotspots. Major mountains include Saur, Tarbagatai, Dzungarian Alatau, Tien Shan, Pamir-Alai and Kopet Dag. Because a range of altitudinal belts exists, the region is characterized by high biological diversity at ecosystem, species and population levels. In addition, the contact between Asian and Mediterranean flora in Central Asia has created unique plant communities. More than 8100 plant species have been recorded for the territory of Central Asia; about 5000–6000 of them grow in the mountains. The aim of this review is to summarize all the available data from 1930 to date on alkaloid-containing plants of the Central Asian mountains. In Saur 301 of a total of 661 species, in Tarbagatai 487 out of 1195, in Dzungarian Alatau 699 out of 1080, in Tien Shan 1177 out of 3251, in Pamir-Alai 1165 out of 3422 and in Kopet Dag 438 out of 1942 species produce alkaloids. The review also tabulates the individual alkaloids which were detected in the plants from the Central Asian mountains. -
Phylogenetic Placement of Ivodea and Biogeographic Affinities Of
Plant Systematics and Evolution (2020) 306:7 https://doi.org/10.1007/s00606-020-01633-3 ORIGINAL ARTICLE Phylogenetic placement of Ivodea and biogeographic afnities of Malagasy Rutaceae Marc S. Appelhans1,2 · Jun Wen2 Received: 6 December 2018 / Accepted: 8 January 2020 / Published online: 1 February 2020 © The Author(s) 2020 Abstract The genus Ivodea is endemic to Madagascar and the Comoros and consists of 30 species. This study is the frst to include the genus in a molecular phylogenetic analysis. We sequenced the plastid trnL–trnF and the nuclear ITS regions for three Ivodea species and revealed that the genus is monophyletic and most closely related to the African and Malagasy Vepris, refuting earlier suggestions of a close relationship between Ivodea and the Asian, Malesian, Australasian and Pacifc genera Euodia and Melicope. Ivodea and Vepris provide another example of closely related pairs of Rutaceous groups that have drupaceous and capsular/follicular fruits, respectively, thus further confrming that fruit types are not suited to delimit sub- families in Rutaceae, as has often been done in the past. Ivodea was the last of the seven Malagasy genera to be included in the Rutaceae phylogeny, making it possible to conduct an assessment of biogeographic afnities of the genera that occur on the island. Our assessments based on sister-group relationships suggest that the eight lineages (representing seven genera) of Malagasy Rutaceae either have African or have Asian afnities. Two lineages have an African origin, and one lineage has an Asian origin. Taxon sampling is insufcient to interpret the directionality of dispersal events in the remaining lineages. -
Analysis of Phytochemicals and Anti-Plasmodial
ANALYSIS OF PHYTOCHEMICALS AND ANTI-PLASMODIAL ACTIVITIES OF EXTRACTS FROM HARRISONIA ABYSSINICA, LEUCAS CALOSTACHYS AND RUBIA CORDIFOLIA AGAINST PLASMODIUM FALCIPARUM MAGARA JEREMIAH (B.Ed. Sc.) I56/24461/2013 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENT FOR THE AWARD OF DEGREE OF MASTER OF SCIENCE (APPLIED PARASITOLOGY) IN THE SCHOOL OF PURE AND APPLIED SCIENCES OF KENYATTA UNIVERSITY DECEMBER, 2018 ii DECLARATION I, Magara Jeremiah, declare that this thesis is my original work and has not been presented in any other institution for a degree or any other award. Signature………………………………... Date………………………… Magara Jeremiah (B.Ed Sc.) Department of Zoological Sciences Supervisors’ Approval We confirm that the work reported in this thesis was carried out by the candidate under our supervision as the university supervisors. Signature………………………………. Date ………………………… Dr. Lucy Kamau Department of Zoological Sciences Kenyatta University Signature……………………………… Date………………………….. Dr. Hastings Ozwara Department of Tropical and Infectious Diseases Institute of Primate Research Signature……………………………….. Date…………………………. Dr. Grace Nyambati Department of Biomedical Sciences and Technology The Technical University of Kenya iii DEDICATION I dedicate this work to my wife Ann Monchari and sons Newton Orenge and Brighton Magara for their patience and inspiration. iv ACKNOWLEDGEMENTS This project was carried out at the Institute of Primate Research (IPR) under the supervision of Dr. Lucy Kamau, Dr. Grace Nyambati and Dr. Hastings Ozwara. I wish to thank them for the guidance at all stages of this work. My sincere appreciation to Dr. Grace Nyambati who did preliminary work on the three plants used in this study and Dr. Hastings Ozwara for allowing me to carry out the research in his laboratory at the IPR. -
Accepted Manuscript
Accepted Manuscript Plastid and nuclear DNA markers reveal intricate relationships at subfamilial and tribal levels in the soapberry family (Sapindaceae) Sven Buerki, Félix Forest, Pedro Acevedo-Rodríguez, Martin W. Callmander, Johan A.A. Nylander, Mark Harrington, Isabel Sanmartín, Philippe Küpfer, Nadir Alvarez PII: S1055-7903(09)00017-7 DOI: 10.1016/j.ympev.2009.01.012 Reference: YMPEV 3130 To appear in: Molecular Phylogenetics and Evolution Received Date: 21 May 2008 Revised Date: 27 November 2008 Accepted Date: 23 January 2009 Please cite this article as: Buerki, S., Forest, F., Acevedo-Rodríguez, P., Callmander, M.W., Nylander, J.A.A., Harrington, M., Sanmartín, I., Küpfer, P., Alvarez, N., Plastid and nuclear DNA markers reveal intricate relationships at subfamilial and tribal levels in the soapberry family (Sapindaceae), Molecular Phylogenetics and Evolution (2009), doi: 10.1016/j.ympev.2009.01.012 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. ACCEPTED MANUSCRIPT Buerki et al. 1 1 Plastid and nuclear DNA markers reveal intricate relationships at subfamilial and tribal 2 levels in the soapberry family (Sapindaceae) 3 4 Sven Buerki a,*, Félix Forest b, Pedro Acevedo-Rodríguez c, Martin W. Callmander d,e, 5 Johan A. -
Plastid and Nuclear DNA Markers.Pdf
Molecular Phylogenetics and Evolution 51 (2009) 238–258 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Plastid and nuclear DNA markers reveal intricate relationships at subfamilial and tribal levels in the soapberry family (Sapindaceae) Sven Buerki a,*, Félix Forest b, Pedro Acevedo-Rodríguez c, Martin W. Callmander d,e, Johan A.A. Nylander f, Mark Harrington g, Isabel Sanmartín h, Philippe Küpfer a, Nadir Alvarez a a Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, CH-2009 Neuchâtel, Switzerland b Molecular Systematics Section, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, United Kingdom c Department of Botany, Smithsonian Institution, National Museum of Natural History, NHB-166, Washington, DC 20560, USA d Missouri Botanical Garden, PO Box 299, 63166-0299, St. Louis, MO, USA e Conservatoire et Jardin botaniques de la ville de Genève, ch. de l’Impératrice 1, CH-1292 Chambésy, Switzerland f Department of Botany, Stockholm University, SE-10691, Stockholm, Sweden g School of Marine and Tropical Biology, James Cook University, PO Box 6811, Cairns, Qld 4870, Australia h Department of Biodiversity and Conservation, Real Jardin Botanico – CSIC, Plaza de Murillo 2, 28014 Madrid, Spain article info abstract Article history: The economically important soapberry family (Sapindaceae) comprises about 1900 species mainly found Received 21 May 2008 in the tropical regions of the world, with only a few genera being restricted to temperate areas. The inf- Revised 27 November 2008 rafamilial classification of the Sapindaceae and its relationships to the closely related Aceraceae and Hip- Accepted 23 January 2009 pocastanaceae – which have now been included in an expanded definition of Sapindaceae (i.e., subfamily Available online 30 January 2009 Hippocastanoideae) – have been debated for decades. -
Threatened Ecosystems of Myanmar
Threatened ecosystems of Myanmar An IUCN Red List of Ecosystems Assessment Nicholas J. Murray, David A. Keith, Robert Tizard, Adam Duncan, Win Thuya Htut, Nyan Hlaing, Aung Htat Oo, Kyaw Zay Ya and Hedley Grantham 2020 | Version 1.0 Threatened Ecosystems of Myanmar. An IUCN Red List of Ecosystems Assessment. Version 1.0. Murray, N.J., Keith, D.A., Tizard, R., Duncan, A., Htut, W.T., Hlaing, N., Oo, A.H., Ya, K.Z., Grantham, H. License This document is an open access publication licensed under a Creative Commons Attribution-Non- commercial-No Derivatives 4.0 International (CC BY-NC-ND 4.0). Authors: Nicholas J. Murray University of New South Wales and James Cook University, Australia David A. Keith University of New South Wales, Australia Robert Tizard Wildlife Conservation Society, Myanmar Adam Duncan Wildlife Conservation Society, Canada Nyan Hlaing Wildlife Conservation Society, Myanmar Win Thuya Htut Wildlife Conservation Society, Myanmar Aung Htat Oo Wildlife Conservation Society, Myanmar Kyaw Zay Ya Wildlife Conservation Society, Myanmar Hedley Grantham Wildlife Conservation Society, Australia Citation: Murray, N.J., Keith, D.A., Tizard, R., Duncan, A., Htut, W.T., Hlaing, N., Oo, A.H., Ya, K.Z., Grantham, H. (2020) Threatened Ecosystems of Myanmar. An IUCN Red List of Ecosystems Assessment. Version 1.0. Wildlife Conservation Society. ISBN: 978-0-9903852-5-7 DOI 10.19121/2019.Report.37457 ISBN 978-0-9903852-5-7 Cover photos: © Nicholas J. Murray, Hedley Grantham, Robert Tizard Numerous experts from around the world participated in the development of the IUCN Red List of Ecosystems of Myanmar. The complete list of contributors is located in Appendix 1. -
Contribution to Plant Genome Size Knowledge: First Assessments in Five Genera and 30 Species of Angiosperms from Western Balkans
38 (1): (2014) 25-33 Original Scientific Paper Contribution to plant genome size knowledge: first assessments in five genera and 30 species of angiosperms from western Balkans Joan Vallès1,✳, Neđad Bašić2,6, Faruk Bogunić2,6, Mickael Bourge3, Spencer C. Brown4, Teresa Garnatje5, Alma Hajrudinović2, Edina Muratović6, Fatima Pustahija2,6, Edita M. Šolić7 and Sonja Siljak-Yakovlev8 1 Laboratori de Botànica - Unitat Associada CSIC, Facultat de Farmàcia, Universitat de Barcelona, Av. Joan XXIII s.n., 08028 Barcelona, Catalonia, Spain. 2 Faculty of Forestry, University of Sarajevo, Zagrebačka 20, 71000 Sarajevo, Bosnia and Herzegovina 3 Pôle de Biologie Cellulaire, Imagif & IFR87, CNRS, 91198, Gif-sur-Yvette, France 4 Compartimentation Cellulaire, Institut des Sciences du Végétal, CNRS UPR 2355, 91198, Gif-sur-Yvette, France 5 Institut Botànic de Barcelona (IBB-CSIC-ICUB), Passeig del Migdia s.n., Parc de Montjuïc, 08038 Barcelona, Catalonia, Spain. 6 Department of Biology, University of Sarajevo, Faculty of Sciences, Laboratory for Research and Protection of Endemic Resources, Zmaja od Bosne 33, 71000 Sarajevo, Bosnia and Herzegovina. 7 Institute “Mountain and Sea”, Franjevački put 1, 21300 Makarska, Croatia. 8 Université Paris Sud, Laboratoire d'Ecologie, Systématique et Evolution, UMR8079 CNRS-UPS-AgroParis-Tech, Bât. 360, 91405 Orsay Cedex, France. ABSTRACT: The first assessments, done by flow cytometry, of nuclear DNA amount for five genera and 30 species of angiosperms (three monocots, 27 eudicots) from the western Balkan Peninsula, including eight taxa with some degree of endemism to this area, are presented here. These data complement the substantial existing information on plant genome size in this region, now accounting for 670 species and subspecies studied for this character. -
RUTACEAE 芸香科 Yun Xiang Ke Zhang Dianxiang (张奠湘)1; Thomas G
RUTACEAE 芸香科 yun xiang ke Zhang Dianxiang (张奠湘)1; Thomas G. Hartley2, David J. Mabberley3 Shrubs, trees, or sometimes herbs, sometimes scrambling or scandent, sometimes armed, with aromatic volatile oils contained in glands visible at surface of at least leaves, young branchlets, inflorescences, flower parts, fruit, or cotyledons in seed. Stipules absent [or stipular excrescences rarely present]. Leaves alternate, opposite [or whorled], simple (petiole neither apically swollen nor articulate with leaf blade), 1-foliolate (in individual specimens at least some 1-foliolate leaves with petiole apically swollen and/or articulate with leaf blade), or variously compound. Flowers bisexual or unisexual, usually 3–5-merous, actinomorphic or rarely zygomorphic, hypo- gynous [or rarely perigynous]. Perianth in 2 series, with clearly differentiated calyx and corolla or sometimes in 2 irregular series or 1 series, with ± undifferentiated tepals. Sepals distinct or connate to their full length. Petals distinct [or rarely coherent or connate for part of their length]. Stamens usually as many as or 2 × as many as petals or sometimes more numerous; filaments distinct or sometimes coherent or connate for at least part of their length; anthers introrse or sometimes latrorse, longitudinally dehiscent. Disk [rarely lack- ing] within androecium, nectariferous, flattened, annular, cup-shaped, pulvinate, or sometimes columnar, bell-shaped, conic, or hour- glass-shaped. Gynoecium of 1–5 distinct 1-loculed carpels or 2 to many partially to completely connate carpels; placentation axile [very rarely becoming parietal]; ovules 1 to many per locule. Fruit of 2–5 follicles [drupes or samaras] or a single follicle, capsule, or berry [or samara]. Seeds with relatively large embryo; endosperm present and fleshy or lacking. -
Thonner's Analytical Key to the Families of Flowering Plants
Thonner's analyticalke y to thefamilie s of flowering plants R.Geesin k A.J .M .Leeuwenber g C.E.Ridsdale J.F .Veldkam p PUDOC, Centre for Agricultural Leiden University Press Publishing and Documentation The Hague/Boston/London, Wageningen, 1981 1981 /1/0 07 (P- :>< R. Geesink-Rijksherbarium, Leiden, Netherlands A. J. M. Leeuwenberg - Laboratorium voor Plantensystematiek en Planten- geografie, Agricultural University, Wageningen, Netherlands C. E. Ridsdale-B. A. Krukoff Botanist ofMalesia n Botany, Rijksherbarium, Leiden, Netherlands J. F. Veldkamp-Rijksherbarium, Leiden, Netherlands This volume isliste d inth eLibrar y of Congress Cataloging inPublicatio n Data Thisi sa translate d and revised edition of:Anleitun g zumBestimme n der Familien der Blutenpflanzen, 2nd. ed. 1917, Friedländer, Berlin ISBN 90-220-0730-8 © Centre foragricultura l publishing and documentation, PUDOC, Wageningen 1981 and Martinus Nijhoff Publishers, The Hague, 1981 Allright sreserved . Nopar t ofthi spublicatio n mayb ereproduced , stored ina retrieva l system, or transmitted in any form or by any means, mechanical, photocopying, recording, or otherwise, without the prior written permission of the publishers, Martinus Nijhoff Publishers, P.O. Box 566, 2501 CN The Hague, The Netherlands, and PUDOC, P.O. Box 4,670 0A AWageningen , TheNetherland s Printed inth e Netherlands Contents Preface toth e2n deditio n(1917 ) vii Introduction viii Acknowledgements x FranzThonne r- Life (1863-1928) xii FranzThonner-Bibliograph y xv FranzThonner-Derive dwork s xviii FranzThonner-Eponym y xx The Key - Introduction and Notes xxii Schemefo r adiagnosti cdescriptio n xxvi Conciseke yt oth ema jo rgrouping s 1 Keyt oth efamilie s 3 Glossary 198 Index 214 'All plants are hybrids, but some are greater bastards than others' lf*!Mfc .-, -e *••-r • + VT-V «-•! * . -
Plant Diversity in Burapha University, Sa Kaeo Campus
doi:10.14457/MSU.res.2019.25 ICoFAB2019 Proceedings | 144 Plant Diversity in Burapha University, Sa Kaeo Campus Chakkrapong Rattamanee*, Sirichet Rattanachittawat and Paitoon Kaewhom Faculty of Agricultural Technology, Burapha University Sa Kaeo Campus, Sa Kaeo 27160, Thailand *Corresponding author’s e-mail: [email protected] Abstract: Plant diversity in Burapha University, Sa Kaeo campus was investigated from June 2016–June 2019. Field expedition and specimen collection was done and deposited at the herbarium of the Faculty of Agricultural Technology. 400 plant species from 271 genera 98 families were identified. Three species were pteridophytes, one species was gymnosperm, and 396 species were angiosperms. Flowering plants were categorized as Magnoliids 7 species in 7 genera 3 families, Monocots 106 species in 58 genera 22 families and Eudicots 283 species in 201 genera 69 families. Fabaceae has the greatest number of species among those flowering plant families. Keywords: Biodiversity, Conservation, Sa Kaeo, Species, Dipterocarp forest Introduction Deciduous dipterocarp forest or dried dipterocarp forest covered 80 percent of the forest area in northeastern Thailand spreads to central and eastern Thailand including Sa Kaeo province in which the elevation is lower than 1,000 meters above sea level, dry and shallow sandy soil. Plant species which are common in this kind of forest, are e.g. Buchanania lanzan, Dipterocarpus intricatus, D. tuberculatus, Shorea obtusa, S. siamensis, Terminalia alata, Gardenia saxatilis and Vietnamosasa pusilla [1]. More than 80 percent of the area of Burapha University, Sa Kaeo campus was still covered by the deciduous dipterocarp forest called ‘Khok Pa Pek’. This 2-square-kilometers forest locates at 13°44' N latitude and 102°17' E longitude in Watana Nakorn district, Sa Kaeo province. -
This Article Appeared in a Journal Published by Elsevier. the Attached Copy Is Furnished to the Author for Internal Non-Commerci
This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Molecular Phylogenetics and Evolution 57 (2010) 258–265 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Implications of a molecular phylogenetic study of the Malagasy genus Cedrelopsis and its relatives (Ptaeroxylaceae) Sylvain G. Razafimandimbison a,*, Marc S. Appelhans b,c, Harison Rabarison d, Thomas Haevermans e, Andriarimalala Rakotondrafara f, Stephan R. Rakotonandrasana f, Michel Ratsimbason f, Jean-Noël Labat e, Paul J.A. Keßler b,c, Erik Smets b,c,g, Corinne Cruaud h, Arnaud Couloux h, Milijaona Randrianarivelojosia i,j a Department of Botany, Bergius Foundation, Stockholm University, SE-10691, Stockholm, Sweden b Netherlands Centre for Biodiversity Naturalis (section NHN), Leiden University, 2300 RA, The Netherlands c Hortus Botanicus Leiden, Leiden, The Netherlands d Département de Biologie et Ecologie Végétales, Université d’Antananarivo, Madagascar e Muséum National d’Histoire Naturelle, Département Systématique et Evolution, UMR 7205 CNRS/MNHN Origine, Structure et Evolution de la Biodiversité, C.P.