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Phylogenetic Relationships of Ruteae (Rutaceae): New Evidence from the Chloroplast Genome and Comparisons with Non-Molecular Data
ARTICLE IN PRESS Molecular Phylogenetics and Evolution xxx (2008) xxx–xxx Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenetic relationships of Ruteae (Rutaceae): New evidence from the chloroplast genome and comparisons with non-molecular data Gabriele Salvo a,*, Gianluigi Bacchetta b, Farrokh Ghahremaninejad c, Elena Conti a a Institute of Systematic Botany, University of Zürich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland b Center for Conservation of Biodiversity (CCB), Department of Botany, University of Cagliari, Viale S. Ignazio da Laconi 13, 09123 Cagliari, Italy c Department of Biology, Tarbiat Moallem University, 49 Dr. Mofatteh Avenue, 15614 Tehran, Iran article info abstract Article history: Phylogenetic analyses of three cpDNA markers (matK, rpl16, and trnL–trnF) were performed to evaluate Received 12 December 2007 previous treatments of Ruteae based on morphology and phytochemistry that contradicted each other, Revised 14 July 2008 especially regarding the taxonomic status of Haplophyllum and Dictamnus. Trees derived from morpho- Accepted 9 September 2008 logical, phytochemical, and molecular datasets of Ruteae were then compared to look for possible pat- Available online xxxx terns of agreement among them. Furthermore, non-molecular characters were mapped on the molecular phylogeny to identify uniquely derived states and patterns of homoplasy in the morphological Keywords: and phytochemical datasets. The phylogenetic analyses determined that Haplophyllum and Ruta form Ruta reciprocally exclusive monophyletic groups and that Dictamnus is not closely related to the other genera Citrus family Morphology of Ruteae. The different types of datasets were partly incongruent with each other. The discordant phy- Phytochemistry logenetic patterns between the phytochemical and molecular trees might be best explained in terms of Congruence convergence in secondary chemical compounds. -
Diversity of the Mountain Flora of Central Asia with Emphasis on Alkaloid-Producing Plants
diversity Review Diversity of the Mountain Flora of Central Asia with Emphasis on Alkaloid-Producing Plants Karimjan Tayjanov 1, Nilufar Z. Mamadalieva 1,* and Michael Wink 2 1 Institute of the Chemistry of Plant Substances, Academy of Sciences, Mirzo Ulugbek str. 77, 100170 Tashkent, Uzbekistan; [email protected] 2 Institute of Pharmacy and Molecular Biotechnology, Heidelberg University, Im Neuenheimer Feld 364, 69120 Heidelberg, Germany; [email protected] * Correspondence: [email protected]; Tel.: +9-987-126-25913 Academic Editor: Ipek Kurtboke Received: 22 November 2016; Accepted: 13 February 2017; Published: 17 February 2017 Abstract: The mountains of Central Asia with 70 large and small mountain ranges represent species-rich plant biodiversity hotspots. Major mountains include Saur, Tarbagatai, Dzungarian Alatau, Tien Shan, Pamir-Alai and Kopet Dag. Because a range of altitudinal belts exists, the region is characterized by high biological diversity at ecosystem, species and population levels. In addition, the contact between Asian and Mediterranean flora in Central Asia has created unique plant communities. More than 8100 plant species have been recorded for the territory of Central Asia; about 5000–6000 of them grow in the mountains. The aim of this review is to summarize all the available data from 1930 to date on alkaloid-containing plants of the Central Asian mountains. In Saur 301 of a total of 661 species, in Tarbagatai 487 out of 1195, in Dzungarian Alatau 699 out of 1080, in Tien Shan 1177 out of 3251, in Pamir-Alai 1165 out of 3422 and in Kopet Dag 438 out of 1942 species produce alkaloids. The review also tabulates the individual alkaloids which were detected in the plants from the Central Asian mountains. -
Phylogenetic Placement of Ivodea and Biogeographic Affinities Of
Plant Systematics and Evolution (2020) 306:7 https://doi.org/10.1007/s00606-020-01633-3 ORIGINAL ARTICLE Phylogenetic placement of Ivodea and biogeographic afnities of Malagasy Rutaceae Marc S. Appelhans1,2 · Jun Wen2 Received: 6 December 2018 / Accepted: 8 January 2020 / Published online: 1 February 2020 © The Author(s) 2020 Abstract The genus Ivodea is endemic to Madagascar and the Comoros and consists of 30 species. This study is the frst to include the genus in a molecular phylogenetic analysis. We sequenced the plastid trnL–trnF and the nuclear ITS regions for three Ivodea species and revealed that the genus is monophyletic and most closely related to the African and Malagasy Vepris, refuting earlier suggestions of a close relationship between Ivodea and the Asian, Malesian, Australasian and Pacifc genera Euodia and Melicope. Ivodea and Vepris provide another example of closely related pairs of Rutaceous groups that have drupaceous and capsular/follicular fruits, respectively, thus further confrming that fruit types are not suited to delimit sub- families in Rutaceae, as has often been done in the past. Ivodea was the last of the seven Malagasy genera to be included in the Rutaceae phylogeny, making it possible to conduct an assessment of biogeographic afnities of the genera that occur on the island. Our assessments based on sister-group relationships suggest that the eight lineages (representing seven genera) of Malagasy Rutaceae either have African or have Asian afnities. Two lineages have an African origin, and one lineage has an Asian origin. Taxon sampling is insufcient to interpret the directionality of dispersal events in the remaining lineages. -
Contribution to Plant Genome Size Knowledge: First Assessments in Five Genera and 30 Species of Angiosperms from Western Balkans
38 (1): (2014) 25-33 Original Scientific Paper Contribution to plant genome size knowledge: first assessments in five genera and 30 species of angiosperms from western Balkans Joan Vallès1,✳, Neđad Bašić2,6, Faruk Bogunić2,6, Mickael Bourge3, Spencer C. Brown4, Teresa Garnatje5, Alma Hajrudinović2, Edina Muratović6, Fatima Pustahija2,6, Edita M. Šolić7 and Sonja Siljak-Yakovlev8 1 Laboratori de Botànica - Unitat Associada CSIC, Facultat de Farmàcia, Universitat de Barcelona, Av. Joan XXIII s.n., 08028 Barcelona, Catalonia, Spain. 2 Faculty of Forestry, University of Sarajevo, Zagrebačka 20, 71000 Sarajevo, Bosnia and Herzegovina 3 Pôle de Biologie Cellulaire, Imagif & IFR87, CNRS, 91198, Gif-sur-Yvette, France 4 Compartimentation Cellulaire, Institut des Sciences du Végétal, CNRS UPR 2355, 91198, Gif-sur-Yvette, France 5 Institut Botànic de Barcelona (IBB-CSIC-ICUB), Passeig del Migdia s.n., Parc de Montjuïc, 08038 Barcelona, Catalonia, Spain. 6 Department of Biology, University of Sarajevo, Faculty of Sciences, Laboratory for Research and Protection of Endemic Resources, Zmaja od Bosne 33, 71000 Sarajevo, Bosnia and Herzegovina. 7 Institute “Mountain and Sea”, Franjevački put 1, 21300 Makarska, Croatia. 8 Université Paris Sud, Laboratoire d'Ecologie, Systématique et Evolution, UMR8079 CNRS-UPS-AgroParis-Tech, Bât. 360, 91405 Orsay Cedex, France. ABSTRACT: The first assessments, done by flow cytometry, of nuclear DNA amount for five genera and 30 species of angiosperms (three monocots, 27 eudicots) from the western Balkan Peninsula, including eight taxa with some degree of endemism to this area, are presented here. These data complement the substantial existing information on plant genome size in this region, now accounting for 670 species and subspecies studied for this character. -
Intro E Metodologia
UNIVERSIDADE FEDERAL DA BAHIA INSTITUTO DE QUÍMICA PROGRAMA DE PÓS-GRADUAÇÃO IURA MUNIZ ALVES ESTUDO FITOQUÍMICO DA RAIZ DE Dictyoloma vandellianum A. JUSS SALVADOR 2008 i IURA MUNIZ ALVES ESTUDO FITOQUÍMICO DA RAIZ DE Dictyoloma vandellianum A. JUSS Dissertação apresentada ao Programa de Pós-Graduação em Química, área de concentração Química Orgânica, Instituto de Química, Universidade Federal da Bahia, como requisito parcial para a obtenção do grau de mestre em Química, área Química Orgânica. Orientador: Prof. Dr. Frederico Guaré Cruz Co-orientador: Prof. Dr. Eudes da Silva Velozo Salvador 2008 ii AGRADECIMENTOS Agradeço a: Vanilda, Fernanda, Eagles, Dorivaldo, Lourenço, Profª Elaine, Édler, Zan, Cinara, Railda, Cássia, Edjane, Magnólia, Renata, Ricardo, Luíza, Glaucy, Sandra, Zênis, Eudes, Fred, PC Vieira, Sílvio, Jorge David, Márcia Cristina, Nina, Rita, Fernando, Daniel, Jaff, Lú, Mara Spínola, Janice, Fábio, Luciene, Cleiton, Daniel, Pinho, Cristina “The mother of the groove”, Osvaldo, Enobaldo, Angélica, Renata, Anne, Prof Themístocles, Lucas, Acácio, Pablo, Vitor, Cristiano, Juliana, Michele, Mônica, Zemba, Themístocles, Judson, Tatiana Daltro, João Paulo, Vanessa, Pedro, Milena, Aline, Lorena, Andrea, Jailton, Airan, Lenilton, Luciano, Edvan, Rogério, Acyr, Rolemberg, Djavan, Jair Oliveira, Max de Castro, Wilson Simoninha, Wilson das Neves, Ubaldo Versolato, BB King, Robert Johnson, Stevie Vai, The Jeff Healey Band, Jeff Back, The Funk Como Le Gusta, Eletrotech, Tribaltech, John Scofield, Pat Metheny, Herbie Hancock, Dennis Chambers, -
Chilean Pitavia More Closely Related to Oceania and Old World Rutaceae
A peer-reviewed open-access journal PhytoKeys 19: 9–29Chilean (2012) Pitavia more closely related to Oceania and Old World Rutaceae... 9 doi: 10.3897/phytokeys.19.3912 RESEARCH ARTICLE www.phytokeys.com Launched to accelerate biodiversity research Chilean Pitavia more closely related to Oceania and Old World Rutaceae than to Neotropical groups: evidence from two cpDNA non-coding regions, with a new subfamilial classification of the family Milton Groppo1, Jacquelyn A. Kallunki2, José Rubens Pirani3, Alexandre Antonelli4 1 Departamento de Biologia, FFCLRP, Universidade de São Paulo, Av. Bandeirantes 3900, 14040-901 – Ribeirão Preto, SP, Brazil 2 The New York Botanical Garden, Bronx, NY, 10458-5126, USA 3 Instituto de Biociências, Universidade de São Paulo, Rua do Matão 277, 05508-090, São Paulo, SP, Brazil 4 Department of Biological and Environmental Sciences, University of Gothenburg, Carl Skottsbergs gata 22B, PO Box 461, 405 30 Gothenburg, Sweden Corresponding author: Milton Groppo ([email protected]) Academic editor: P. Acevedo-Rodríguez | Received 29 August 2012 | Accepted 5 December 2012 | Published 18 December 2012 Citation: Groppo M, Kallunki JA, Pirani JR, Antonelli A (2012) Chilean Pitavia more closely related to Oceania and Old World Rutaceae than to Neotropical groups: evidence from two cpDNA non-coding regions, with a new subfamilial classification of the family. PhytoKeys 19: 9–29. doi: 10.3897/phytokeys.19.3912 Abstract The position of the plant genus Pitavia within an infrafamilial phylogeny of Rutaceae (rue, or orange family) was investigated with the use of two non-coding regions from cpDNA, the trnL-trnF region and the rps16 intron. The only species of the genus, Pitavia punctata Molina, is restricted to the temperate forests of the Coastal Cordillera of Central-Southern Chile and threatened by loss of habitat. -
Phylogenetic Relationships of Ruteae (Rutaceae): New Evidence from the Chloroplast Genome and Comparisons with Non-Molecular Data
Molecular Phylogenetics and Evolution 49 (2008) 736–748 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenetic relationships of Ruteae (Rutaceae): New evidence from the chloroplast genome and comparisons with non-molecular data Gabriele Salvo a,*, Gianluigi Bacchetta b, Farrokh Ghahremaninejad c, Elena Conti a a Institute of Systematic Botany, University of Zürich, Zollikerstrasse 107, CH-8008 Zürich, Switzerland b Center for Conservation of Biodiversity (CCB), Department of Botany, University of Cagliari, Viale S. Ignazio da Laconi 13, 09123 Cagliari, Italy c Department of Biology, Tarbiat Moallem University, 49 Dr. Mofatteh Avenue, 15614 Tehran, Iran article info abstract Article history: Phylogenetic analyses of three cpDNA markers (matK, rpl16, and trnL–trnF) were performed to evaluate Received 12 December 2007 previous treatments of Ruteae based on morphology and phytochemistry that contradicted each other, Revised 14 July 2008 especially regarding the taxonomic status of Haplophyllum and Dictamnus. Trees derived from morpho- Accepted 9 September 2008 logical, phytochemical, and molecular datasets of Ruteae were then compared to look for possible pat- Available online 17 September 2008 terns of agreement among them. Furthermore, non-molecular characters were mapped on the molecular phylogeny to identify uniquely derived states and patterns of homoplasy in the morphological Keywords: and phytochemical datasets. The phylogenetic analyses determined that Haplophyllum and Ruta form Ruta reciprocally exclusive monophyletic groups and that Dictamnus is not closely related to the other genera Citrus family Morphology of Ruteae. The different types of datasets were partly incongruent with each other. The discordant phy- Phytochemistry logenetic patterns between the phytochemical and molecular trees might be best explained in terms of Congruence convergence in secondary chemical compounds. -
Chapter 5 Age and Historical Biogeography of the Pan Tropically
Phylogeny and biogeography of Spathelioideae (Rutaceae) Appelhans, M.S. Citation Appelhans, M. S. (2011, November 15). Phylogeny and biogeography of Spathelioideae (Rutaceae). Retrieved from https://hdl.handle.net/1887/18076 Version: Corrected Publisher’s Version Licence agreement concerning inclusion of doctoral thesis License: in the Institutional Repository of the University of Leiden Downloaded from: https://hdl.handle.net/1887/18076 Note: To cite this publication please use the final published version (if applicable). Chapter 5 Age and historical biogeography of the pan tropically distributed Spathelioideae (Rutaceae, Sapindales) Marc S. Appelhans, Paul J.A. Keßler, Erik Smets, Sylvain G. Raza!mandim- bison & Steven B. Janssens Resubmitted a"er revision to Journal of Biogeography Abstract #e main objective of this study is to present the !rst molecular dating and biogeographic analyses of the subfamily Spathelioideae (Rutaceae), which allow us to unravel the temporal and spatial origins of this group, ascertaining possible vicariant patterns and dispersal routes and determining diversi!cation rates through time. A dataset comprising a complete taxon sampling at generic level (83.3% at species level) of Spathelioideae was used for a Bayesian molecular dating analysis (BEAST). Four fossil cali- bration points and an age constraint for Sapindales were applied. An ancestral area recon- struction analysis utilising the dispersal-extinction-cladogenesis model and diversi!cation rate analyses were conducted. Rutaceae and Spathelioideae are probably of Late Cretaceous origin, wherea"er Spatheli- oideae split into a Neotropical and a Paleotropical lineage. #e Paleotropical taxa have their origin in Africa with dispersal events to the Mediterranean, the Canary Islands, Madagascar and South-East Asia. -
Evolution of the Angiosperms and Co-Evolution of Secondary Metabolites, Especially of Alkaloids
Evolution of the Angiosperms and Co-evolution of Secondary Metabolites, Especially of Alkaloids Michael Wink Contents 1 Introduction: Evolution and Functions of Secondary Metabolites .. ... .. ... .. ... ... .. ... .. 2 1.1 Plant Secondary Metabolism ........................................................... 2 1.2 Functions of Plant Secondary Metabolites as Defense Compounds . ............... 4 1.3 Functions of Plant Secondary Metabolites as Signal Compounds . .................. 5 1.4 Adaptation of Herbivores ............................................................... 6 2 Evolution and Function of Alkaloids ........................................................ 6 2.1 Evolution of Alkaloids ................................................................. 9 3 Evolution of Angiosperms, Pollinating Insects, and Defense via Alkaloids . ............... 18 4 Co-evolution of Angiosperms, Animals, and Alkaloids ..................................... 20 5 Conclusions ................................................................................... 21 References ........................................................................................ 22 Abstract Plants produce a wide variety of secondary metabolites (PSM) for protection against herbivores, microorganisms, and competing plants. PSM also function as signal compounds to attract pollinating and fruit-dispersing animals. PSM occur in complex mixtures, which vary between organs and developmental stages of a plant. PSM have been structurally optimized during evolution to affect -
Origins of Plant Diversity in the California Floristic Province
UC Berkeley UC Berkeley Previously Published Works Title Origins of plant diversity in the California Floristic Province Permalink https://escholarship.org/uc/item/3cf1t7nk Journal Annual Review of Ecology, Evolution, and Systematics, 45(1) ISSN 1543-592X Author Baldwin, BG Publication Date 2014 DOI 10.1146/annurev-ecolsys-110512-135847 Peer reviewed eScholarship.org Powered by the California Digital Library University of California ES45CH16-Baldwin ARI 27 October 2014 11:34 Origins of Plant Diversity in the California Floristic Province Bruce G. Baldwin Jepson Herbarium and Department of Integrative Biology, University of California, Berkeley, California 94720-2465; email: [email protected] Annu. Rev. Ecol. Evol. Syst. 2014. 45:347–69 Keywords The Annual Review of Ecology, Evolution, and California flora, endemism, plant evolution, phytogeography, speciation Systematics is online at ecolsys.annualreviews.org This article’s doi: Abstract 10.1146/annurev-ecolsys-110512-135847 Recent biogeographic and evolutionary studies have led to improved under- Copyright c 2014 by Annual Reviews. standing of the origins of exceptionally high plant diversity in the California All rights reserved Floristic Province (CA-FP). Spatial analyses of Californian plant diversity and endemism reinforce the importance of geographically isolated areas of high topographic and edaphic complexity as floristic hot spots, in which the Annu. Rev. Ecol. Evol. Syst. 2014.45:347-369. Downloaded from www.annualreviews.org relative influence of factors promoting evolutionary