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Acta Botanica Brasilica Doi: 10.1590/0102-33062020Abb0051
Acta Botanica Brasilica doi: 10.1590/0102-33062020abb0051 Toward a phylogenetic reclassification of the subfamily Ambavioideae (Annonaceae): establishment of a new subfamily and a new tribe Tanawat Chaowasku1 Received: February 14, 2020 Accepted: June 12, 2020 . ABSTRACT A molecular phylogeny of the subfamily Ambavioideae (Annonaceae) was reconstructed using up to eight plastid DNA regions (matK, ndhF, and rbcL exons; trnL intron; atpB-rbcL, psbA-trnH, trnL-trnF, and trnS-trnG intergenic spacers). The results indicate that the subfamily is not monophyletic, with the monotypic genus Meiocarpidium resolved as the second diverging lineage of Annonaceae after Anaxagorea (the only genus of Anaxagoreoideae) and as the sister group of a large clade consisting of the rest of Annonaceae. Consequently, a new subfamily, Meiocarpidioideae, is established to accommodate the enigmatic African genus Meiocarpidium. In addition, the subfamily Ambavioideae is redefined to contain two major clades formally recognized as two tribes. The tribe Tetramerantheae consisting of only Tetrameranthus is enlarged to include Ambavia, Cleistopholis, and Mezzettia; and Canangeae, a new tribe comprising Cananga, Cyathocalyx, Drepananthus, and Lettowianthus, are erected. The two tribes are principally distinguishable from each other by differences in monoploid chromosome number, branching architecture, and average pollen size (monads). New relationships were retrieved within Tetramerantheae, with Mezzettia as the sister group of a clade containing Ambavia and Cleistopholis. Keywords: Annonaceae, Ambavioideae, Meiocarpidium, molecular phylogeny, systematics, taxonomy et al. 2019). Every subfamily received unequivocally Introduction and consistently strong molecular support except the subfamily Ambavioideae, which is composed of nine Annonaceae, a pantropical family of flowering plants genera: Ambavia, Cananga, Cleistopholis, Cyathocalyx, prominent in lowland rainforests, consist of 110 genera Drepananthus, Lettowianthus, Meiocarpidium, Mezzettia, (Guo et al. -
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
ORIGINAL RESEARCH published: 09 January 2019 doi: 10.3389/fpls.2018.01941 Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes Thomas L. P. Couvreur 1*†, Andrew J. Helmstetter 1†, Erik J. M. Koenen 2, Kevin Bethune 1, Rita D. Brandão 3, Stefan A. Little 4, Hervé Sauquet 4,5 and Roy H. J. Erkens 3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France, 2 Institute of Systematic Botany, University of Zurich, Zurich, Switzerland, 3 Maastricht Science Programme, Maastricht University, Maastricht, Netherlands, 4 Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université-Paris Saclay, Orsay, France, 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, NSW, Australia Edited by: Jim Leebens-Mack, University of Georgia, United States Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic Reviewed by: reconstruction is becoming an important tool for plant systematics and evolution. Eric Wade Linton, Central Michigan University, Annonaceae is a major pantropical plant family with 110 genera and ca. 2,450 species, United States occurring across all major and minor tropical forests of the world. Baits were designed Mario Fernández-Mazuecos, by sequencing the transcriptomes of five species from two of the largest Annonaceae Real Jardín Botánico (RJB), Spain Angelica Cibrian-Jaramillo, subfamilies. Orthologous loci were identified. The resulting baiting kit was used to Centro de Investigación y de Estudios reconstruct phylogenetic relationships at two different levels using concatenated and Avanzados (CINVESTAV), Mexico gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and *Correspondence: Thomas L. P. -
(Bedd.) IM Turner (Annonaceae) and a New Variety from India
Taiwania 62(3): 305‒310, 2017 DOI: 10.6165/tai.2017.62.305 Notes on the Taxonomic status of Polyalthia malabarica (Bedd.) I. M. Turner (Annonaceae) and a new variety from India Mohan ALISTER*, Gopalaprabhu RAJKUMAR, Ahammed NAZARUDEEN and Alagramam Govindasamy PANDURANGAN Division of Plant Systematics and Evolutionary Science, Jawaharlal Nehru Tropical Botanic Garden and Research Institute, Palode, Thiruvananthapuram district, Kerala- 695 562, India. * Corresponding author's email: [email protected] (Manuscript received 15 April 2016; accepted 28 May 2017; online published 25 July 2017) ABSTRACT: The taxonomic status of Polyalthia malabarica (Bedd.) I. M. Turner is discussed and a variety from Western Ghats of India is newly proposed with taxonomic description and illustration. KEY WORDS: Annonaceae, India, Kerala, New variety, Polyalthia malabarica var. longipedicellata. INTRODUCTION et al., 2012). Approximately 65 species were removed from the genus Polyalthia but at the same time nine The genus Polyalthia (Annonaceae) was first additions were included by merging the genus described by C. L. Blume (1830) based on type Haplostichathus as mentioned. Presently the genus specimen Polyalthia subcordata, which was collected Polyalthia comprises approximately 85 species and its from Java (Xue et al., 2012). The genus was considered distribution ranged to Austral-Asian region as one of the largest genera in paleotropical regions in (Chaowasku et al., 2012). the family Annonaceae with distribution ranging from The genus is now characterised by reticulate East Africa to Madagascar, Indian subcontinent and venation of leaves, generally with more or less South East Asia to Australia with approximately about subcordate or cordate leaf base, axillary to extra 150 species (Verdcourt, 1969; Xue et al., 2011; axillary or terminal inflorescence, 2‒6 ovules per ovary, Saunders et al., 2011). -
Chec List What Survived from the PLANAFLORO Project
Check List 10(1): 33–45, 2014 © 2014 Check List and Authors Chec List ISSN 1809-127X (available at www.checklist.org.br) Journal of species lists and distribution What survived from the PLANAFLORO Project: PECIES S Angiosperms of Rondônia State, Brazil OF 1* 2 ISTS L Samuel1 UniCarleialversity of Konstanz, and Narcísio Department C.of Biology, Bigio M842, PLZ 78457, Konstanz, Germany. [email protected] 2 Universidade Federal de Rondônia, Campus José Ribeiro Filho, BR 364, Km 9.5, CEP 76801-059. Porto Velho, RO, Brasil. * Corresponding author. E-mail: Abstract: The Rondônia Natural Resources Management Project (PLANAFLORO) was a strategic program developed in partnership between the Brazilian Government and The World Bank in 1992, with the purpose of stimulating the sustainable development and protection of the Amazon in the state of Rondônia. More than a decade after the PLANAFORO program concluded, the aim of the present work is to recover and share the information from the long-abandoned plant collections made during the project’s ecological-economic zoning phase. Most of the material analyzed was sterile, but the fertile voucher specimens recovered are listed here. The material examined represents 378 species in 234 genera and 76 families of angiosperms. Some 8 genera, 68 species, 3 subspecies and 1 variety are new records for Rondônia State. It is our intention that this information will stimulate future studies and contribute to a better understanding and more effective conservation of the plant diversity in the southwestern Amazon of Brazil. Introduction The PLANAFLORO Project funded botanical expeditions In early 1990, Brazilian Amazon was facing remarkably in different areas of the state to inventory arboreal plants high rates of forest conversion (Laurance et al. -
Nonaceae Using Targeted Enrichment of Nuclear Genes Supplementary
Phylogenomics of the major tropical plant family An- nonaceae using targeted enrichment of nuclear genes Thomas L.P. Couvreur1,*, Andrew J. Helmstetter1, Erik J.M. Koenen2, Kevin Bethune1, Rita D. Brand~ao3, Stefan Little4, Herv´eSauquet4,5, Roy H.J. Erkens3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France 2 Institute of Systematic Botany, University of Zurich, Z¨urich, Switzer- land 3 Maastricht University, Maastricht Science Programme, P.O. Box 616, 6200 MD Maastricht, The Netherlands 4 Ecologie Syst´ematiqueEvolution, Univ. Paris-Sud, CNRS, AgroParis- Tech, Universit´e-Paris Saclay, 91400, Orsay, France 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, Australia * [email protected] Supplementary Information (see next page) 1 Supplementary Table 1. Specimen details of taxa sampled for both An- nonaceae and Piptostigmateae analyses Subfamily Tribe Species Collector number Country INDEX TAG total reads Mapped % enrichment 10x coverage mean depth Ambavioideae Cleistopholis staudii Couvreur, T.L.P. 570 Gabon I12 TAG79 1790158 402150 22 0,82 119,7 Ambavioideae Drepananthus ramuliflorus Sauquet, H. 167 Malaysia I10 TAG45 2676926 150278 6 0,66 45,1 Ambavioideae Meiocarpidium olivieranum Couvreur, T.L.P. 920 Gabon I10 TAG13 3950072 343879 9 0,80 104,3 Anaxagoreoideae Anaxagorea crassipetala Maas, P.J.M. 9408 Costa Rica I10 TAG25 2648398 256748 10 0,67 76,9 Annonoideae Annoneae Annona glabra Chatrou, L.W. 467 Peru I10 TAG36 4328486 622387 14 0,83 190,7 Annonoideae Annoneae Anonidium mannii Couvreur, T.L.P. 1053 Cameroon I04 TAG36 1613002 679049 42 0,89 206,9 Annonoideae Annoneae Boutiquea platypetala Couvreur, T.L.P. -
Anatomical Structure of Barks in Neotropical Genera of Annonaceae
Ann. Bot. Fennici 44: 79–132 ISSN 0003-3847 Helsinki 28 March 2007 © Finnish Zoological and Botanical Publishing Board 2007 Anatomical structure of barks in Neotropical genera of Annonaceae Leo Junikka1 & Jifke Koek-Noorman2 1) Finnish Museum of Natural History, Botanical Museum, P.O. Box 7, FI-00014 University of Helsinki, Finland (present address: Botanic Garden, P.O. Box 44, FI-00014 University of Helsinki, Finland) (e-mail: [email protected]) 2) National Herbarium of the Netherlands, P.O. Box 80102, 3508 TC Utrecht, The Netherlands (e-mail: [email protected]) Received 1 Oct. 2004, revised version received 23 Aug. 2006, accepted 21 Jan. 2005 Junikka, L. & Koek-Noorman, J. 2007: Anatomical structure of barks in Neotropical genera of Annonaceae. — Ann. Bot. Fennici 44 (Supplement A): 79–132. The bark anatomy of 32 Neotropical genera of Annonaceae was studied. A family description based on Neotropical genera and a discussion of individual bark compo- nents are presented. Selected character states at the family and genus levels are sur- veyed for identification purposes. This is followed by a discussion on the taxonomical and phylogenetic relevance of bark characters according to a phylogram in preparation based on molecular characters. Although the value of many bark anatomical characters turned out to be insignificant in systematic studies of the family, some features lend support to recent phylogenetic results based on morphological and molecular data sets. The taxonomically most informative features of the bark anatomy are sclerification of phellem cells, shape of fibre groups and occurrence of crystals in bark components. Key words: anatomy, Annonaceae, bark, periderm, phloem, phylogeny, rhytidome, taxonomy Introduction collections and the development of some novel methods a multidisciplinary programme on Anno- Woody members of the Annonaceae are one of naceae was embarked on in 1983 at the Univer- the most species-rich components in the tropi- sity of Utrecht. -
Polyalthia Longifolia Description Pdf
Polyalthia longifolia description pdf Continue (Sonn.) Thwaites Annonaceae Guatteria longifolia (Sonn.) Walls. Una Longifolia (Sonn.) by Donal Uvaria Longifolia Sonne. Common name: High, narrow form var pendula Photograph: Mokkie General InformationPolyalthia longifolia - evergreen tree, growing up to 20 meters high. Bol straight. The tree is cultivated for its wood in southeast Asia, it is also often grown as ornamental. The tree is highly valued by Hindus, who often plant near temples. Famous HazardsNone is known botanical links, RangeE. Asia - India, Sri Lanka. HabitatDri country in the forests of Sri Lanka. Properties Other uses the HabitEvergreen Tree Height Rating15.00 m Cultivation StatusOrnamental, Wild Cultivation DetailsUn known Edible UsesNone famous MedicinalNone other UsesThe inner bark is said to give a good bast fiber. yellowish-white wood is quite soft, tough, quite close and venous, . It bends easily and has been used in the creation of barrels. Seed - If you have useful information about this plant, please leave a comment. Comments must be approved before they are shown here. Photos: Dr. Maulik Gadani (Description) Leaf - Leaves of polyaltia longifolia grow alternately on the stem (spirally located). The sheet is simple, glossy, bright green in higher and paler beneath it. The leaves are clumsy and heady on both sides. The leaves are 7-8 mm long petiol. The leaves of polyaltia longifolia are 15-25 cm long and 3-4 cm wide. The form of the lanceolate blade with wavy edges, the top is sharp, the base is cuneate and the fields are intact. Venation sheet reticulate with prominent midrib. Polyaltia longifolia leaves Polyaltia longifolia leaf (upper and lower sides) Polyaltia longifolia new leaves Polyaltia longifolia new leaves Polyaltia longifolia foliage Monoon longifolium Scientific classification Kingdom: Plantae Clade: Trachee Clade: Trache Clade: Angiosperms Clade: Magnoliids Order: Magnoliales Family: Annonaceae Sub-Family: Malmeoideae Genus: Monoon Species: M. -
Diversidad De Géneros Y Especies De Annonaceae En México
Diversidad de géneros y especies de Annonaceae en México Andrés-Agustín, Jorge Centro Regional Universitario Centro-Occidente. UACH.A Av. Periférico Independencia Pte. No. 1000. Col. Lomas del Valle. Morelia, Mich. Tel. (443)3 16 14 89, [email protected] Resumen l presente trabajo se desarrolló durante los años 2009-10 y E Posteriormente se revisaron las especies existentes en las colectas herborizadas de la REMIB. Se hicieron recorridos de campo para ha- cer algunas colectas de especies de Annonaceae y visitas a campos experimentales con colecciones de especies en diferentes partes de la República Mexicana. De acuerdo a la base de datos de la REMIB esta revisión nos indica la presencia de 14 géneros y 62 especies de Annonaceae registradas en México. La lista supera con un género y con 23 especies más que las que han sido aceptadas por el Sistema Integrado de Información Taxonómica-México (SIIT*mx)-CONABIO necesario entonces corroborar estas listas mediante exploraciones y 79 Anonáceas. Plantas antiguas, estudios recientes estudios taxonómicos en México para precisar el número de géneros Palabras clave: taxonomía, diversidad, Annonaceae, México Introducción Aún no existe acuerdo sobre el número de géneros y especies de la fami- 46 géneros y entre 500 y 600 especies, en tanto Que Fries (1959), señala Que esta familia contiene 119 géneros y cerca de 2000 especies. Por su parte Popenoe (1974) describió a la familia Annonaceae desde 40 hasta 50 géneros y más de 500 especies, muchas de ellas como arbustos y pe- queños árboles. La APG (1998) consigna que las anonáceas (Annona- ceae) son una familia de Angiospermas del Orden Magnoliales. -
A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname
Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname Editors: Leeanne E. Alonso and Trond H. Larsen 67 CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed RAP (Grensgebergte and Kasikasima) of Southeastern Suriname Bulletin of Biological Assessment 67 Editors: Leeanne E. Alonso and Trond H. Larsen CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION The RAP Bulletin of Biological Assessment is published by: Conservation International 2011 Crystal Drive, Suite 500 Arlington, VA USA 22202 Tel : +1 703-341-2400 www.conservation.org Cover photos: The RAP team surveyed the Grensgebergte Mountains and Upper Palumeu Watershed, as well as the Middle Palumeu River and Kasikasima Mountains visible here. Freshwater resources originating here are vital for all of Suriname. (T. Larsen) Glass frogs (Hyalinobatrachium cf. taylori) lay their -
Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment of Nuclear Genes
bioRxiv preprint doi: https://doi.org/10.1101/440925; this version posted October 11, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Phylogenomics of the major tropical plant family Annonaceae using targeted enrichment of nuclear genes Thomas L.P. Couvreur1,*+, Andrew J. Helmstetter1,+, Erik J.M. Koenen2, Kevin Bethune1, Rita D. Brandão3, Stefan Little4, Hervé Sauquet4,5, Roy H.J. Erkens3 1 IRD, UMR DIADE, Univ. Montpellier, Montpellier, France 2 Institute of Systematic Botany, University of Zurich, Zürich, Switzerland 3 Maastricht University, Maastricht Science Programme, P.O. Box 616, 6200 MD Maastricht, The Netherlands 4 Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université-Paris Saclay, 91400, Orsay, France 5 National Herbarium of New South Wales (NSW), Royal Botanic Gardens and Domain Trust, Sydney, Australia * [email protected] + authors contributed equally Abstract Targeted enrichment and sequencing of hundreds of nuclear loci for phylogenetic reconstruction is becoming an important tool for plant systematics and evolution. Annonaceae is a major pantropical plant family with 109 genera and ca. 2450 species, occurring across all major and minor tropical forests of the world. Baits were designed by sequencing the transcriptomes of five species from two of the largest Annonaceae subfamilies. Orthologous loci were identified. The resulting baiting kit was used to reconstruct phylogenetic relationships at two different levels using concatenated and gene tree approaches: a family wide Annonaceae analysis sampling 65 genera and a species level analysis of tribe Piptostigmateae sampling 29 species with multiple individuals per species. -
Annonaceae in the Western Pacific
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: European Journal of Taxonomy Jahr/Year: 2017 Band/Volume: 0339 Autor(en)/Author(s): Turner Ian M., Utteridge M. A. Artikel/Article: Annonaceae in the Western Pacific: geographic patterns and four new species 1-44 © European Journal of Taxonomy; download unter http://www.europeanjournaloftaxonomy.eu; www.zobodat.at European Journal of Taxonomy 339: 1–44 ISSN 2118-9773 https://doi.org/10.5852/ejt.2017.339 www.europeanjournaloftaxonomy.eu 2017 · Turner I.M. & Utteridge T.M.A. This work is licensed under a Creative Commons Attribution 3.0 License. Research article Annonaceae in the Western Pacifi c: geographic patterns and four new species Ian M. TURNER 1,* & Timothy M.A. UTTERIDGE 2 1,2 Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AE, UK. * Corresponding author: [email protected] 2 Email: [email protected] Abstract. The taxonomy and distribution of Pacifi c Annonaceae are reviewed in light of recent changes in generic delimitations. A new species of the genus Monoon from the Solomon Archipelago is described, Monoon salomonicum I.M.Turner & Utteridge sp. nov., together with an apparently related new species from New Guinea, Monoon pachypetalum I.M.Turner & Utteridge sp. nov. The confi rmed presence of the genus in the Solomon Islands extends the generic range eastward beyond New Guinea. Two new species of Huberantha are described, Huberantha asymmetrica I.M.Turner & Utteridge sp. nov. and Huberantha whistleri I.M.Turner & Utteridge sp. nov., from the Solomon Islands and Samoa respectively. New combinations are proposed: Drepananthus novoguineensis (Baker f.) I.M.Turner & Utteridge comb. -
Angiosperms) Julien Massoni1*, Thomas LP Couvreur2,3 and Hervé Sauquet1
Massoni et al. BMC Evolutionary Biology (2015) 15:49 DOI 10.1186/s12862-015-0320-6 RESEARCH ARTICLE Open Access Five major shifts of diversification through the long evolutionary history of Magnoliidae (angiosperms) Julien Massoni1*, Thomas LP Couvreur2,3 and Hervé Sauquet1 Abstract Background: With 10,000 species, Magnoliidae are the largest clade of flowering plants outside monocots and eudicots. Despite an ancient and rich fossil history, the tempo and mode of diversification of Magnoliidae remain poorly known. Using a molecular data set of 12 markers and 220 species (representing >75% of genera in Magnoliidae) and six robust, internal fossil age constraints, we estimate divergence times and significant shifts of diversification across the clade. In addition, we test the sensitivity of magnoliid divergence times to the choice of relaxed clock model and various maximum age constraints for the angiosperms. Results: Compared with previous work, our study tends to push back in time the age of the crown node of Magnoliidae (178.78-126.82 million years, Myr), and of the four orders, Canellales (143.18-125.90 Myr), Piperales (158.11-88.15 Myr), Laurales (165.62-112.05 Myr), and Magnoliales (164.09-114.75 Myr). Although families vary in crown ages, Magnoliidae appear to have diversified into most extant families by the end of the Cretaceous. The strongly imbalanced distribution of extant diversity within Magnoliidae appears to be best explained by models of diversification with 6 to 13 shifts in net diversification rates. Significant increases are inferred within Piperaceae and Annonaceae, while the low species richness of Calycanthaceae, Degeneriaceae, and Himantandraceae appears to be the result of decreases in both speciation and extinction rates.