The Reaction of Hydrogen Halides with Tetrahydroborate Anion and Hexahydro-Closo-Hexaborate Dianion
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Densifying Metal Hydrides with High Temperature and Pressure
3,784,682 United States Patent Office Patented Jan. 8, 1974 feet the true density. That is, by this method only theo- 3,784,682 retical or near theoretical densities can be obtained by DENSIFYING METAL HYDRIDES WITH HIGH making the material quite free from porosity (p. 354). TEMPERATURE AND PRESSURE The true density remains the same. Leonard M. NiebylsM, Birmingham, Mich., assignor to Ethyl Corporation, Richmond, Va. SUMMARY OF THE INVENTION No Drawing. Continuation-in-part of abandoned applica- tion Ser. No. 392,370, Aug. 24, 1964. This application The process of this invention provides a practical Apr. 9,1968, Ser. No. 721,135 method of increasing the true density of hydrides of Int. CI. COlb 6/00, 6/06 metals of Groups II-A, II-B, III-A and III-B of the U.S. CI. 423—645 8 Claims Periodic Table. More specifically, true densities of said 10 metal hydrides may be substantially increased by subject- ing a hydride to superatmospheric pressures at or above ABSTRACT OF THE DISCLOSURE fusion temperatures. When beryllium hydride is subjected A method of increasing the density of a hydride of a to this process, a material having a density of at least metal of Groups II-A, II-B, III-A and III-B of the 0.69 g./cc. is obtained. It may or may not be crystalline. Periodic Table which comprises subjecting a hydride to 15 a pressure of from about 50,000 p.s.i. to about 900,000 DESCRIPTION OF THE PREFERRED p.s.i. at or above the fusion temperature of the hydride; EMBODIMENT i.e., between about 65° C. -
Thermodynamic Hydricity of Small Borane Clusters and Polyhedral Closo-Boranes
molecules Article Thermodynamic Hydricity of Small Borane Clusters y and Polyhedral closo-Boranes Igor E. Golub 1,* , Oleg A. Filippov 1 , Vasilisa A. Kulikova 1,2, Natalia V. Belkova 1 , Lina M. Epstein 1 and Elena S. Shubina 1,* 1 A. N. Nesmeyanov Institute of Organoelement Compounds and Russian Academy of Sciences (INEOS RAS), 28 Vavilova St, 119991 Moscow, Russia; [email protected] (O.A.F.); [email protected] (V.A.K.); [email protected] (N.V.B.); [email protected] (L.M.E.) 2 Faculty of Chemistry, M.V. Lomonosov Moscow State University, 1/3 Leninskiye Gory, 119991 Moscow, Russia * Correspondence: [email protected] (I.E.G.); [email protected] (E.S.S.) Dedicated to Professor Bohumil Štibr (1940-2020), who unfortunately passed away before he could reach the y age of 80, in the recognition of his outstanding contributions to boron chemistry. Academic Editors: Igor B. Sivaev, Narayan S. Hosmane and Bohumír Gr˝uner Received: 6 June 2020; Accepted: 23 June 2020; Published: 25 June 2020 MeCN Abstract: Thermodynamic hydricity (HDA ) determined as Gibbs free energy (DG◦[H]−) of the H− detachment reaction in acetonitrile (MeCN) was assessed for 144 small borane clusters (up 2 to 5 boron atoms), polyhedral closo-boranes dianions [BnHn] −, and their lithium salts Li2[BnHn] (n = 5–17) by DFT method [M06/6-311++G(d,p)] taking into account non-specific solvent effect (SMD MeCN model). Thermodynamic hydricity values of diborane B2H6 (HDA = 82.1 kcal/mol) and its 2 MeCN dianion [B2H6] − (HDA = 40.9 kcal/mol for Li2[B2H6]) can be selected as border points for the range of borane clusters’ reactivity. -
Organic Chemistry Lesson 10 Reactions of Organic Molecules Combusition Reactions Substitution Reactions
Organic Chemistry Lesson 10 Reactions of Organic Molecules Combusition Reactions Substitution Reactions Physical Sciences Grade 12 1 Instructions Lesson 10 (16 April 2020) 1. Read ALL the slides in this document. 2. Homework: Just understand the theory for now. • If you have any questions, post them onto your WhatsApp group and your teacher will attend to them when (s)he has a chance. • Additional Resources: • Summary on pg.132 of your textbook. Physical Sciences Grade 12 2 Types of Reactions of Organic Compounds 1. Esterification: formation of an ester from an alcohol and a carboxylic acid. 2. Combustion Reactions (aka Oxidation): organic molecule + oxygen. 3. Substitution Reactions: one or more atoms are replaced by other atoms. (i) alkanes to alkyl halides; (ii) alcohols to alkyl halides; (iii) alkyl halides to alcohols 4. Addition Reactions: one or more atoms are added. (i) hydrogenation; (ii) halogenation; (iii) hydrohalogenation; (iv) hydration 5. Elimination Reactions: one or more atoms are removed. (i) dehydrohalogenation; (ii) dehydration; (iii) cracking of alkanes Physical Sciences Grade 12 3 1. Esterification • Already discussed (refer to earlier notes). Physical Sciences Grade 12 4 2. Combustion Reactions, i.e. Oxidation • A combustion reaction is the reaction of an organic molecule with oxygen. • Please note: “combustion” does NOT mean “explosion”. All combustion reactions release energy but most do so WITHOUT any explosion. • Alkanes – in the form of fossil fuels – are currently the main source of energy worldwide as their combustion is highly exothermic. • Examples: Burning wood for a braai. Propane combusting in a gas stove. Petrol combusting in a car engine. Physical Sciences Grade 12 5 2. -
Activity 33. Hydrohalogenation & Hydration of Alkynes
Chem 201, Fall 2010 Activity 33, M Nov 22 Activity 33. Hydrohalogenation & Hydration of Alkynes Alkynes undergo many of the same addition reactions that alkenes do, including additions that require carbocation intermediates. Different energy and geometry changes may be required for additions to an alkyne and an alkene so some surprising outcomes may occur with alkynes. Model 1. Addition of HX Hydrogen halides (HCl, HBr, HI) add to alkynes to make vinyl halides . A carbocation mechanism is followed when the reaction is performed in the dark in a peroxide-free solvent. This addition obeys Markovnikov’s rule. A free-radical-chain mechanism is followed when HBr addition is initiated by organic peroxides. This addition gives an anti-Markonikov product. Critical Thinking Questions 1. Draw the carbocations indicated by the two bouncy curved arrows (below). Based on the observation that the carbocation mechanism yields a Markovnikov product, circle the more stable carbocation. 2. (CI) Draw the free radicals indicated by the two competing pathways (below). Based on the observation that the free-radical mechanism yields an anti-Markovnikov product, circle the more stable free radical. 3. The cations and radicals in CTQ #1 and #2 are called vinyl cations and vinyl radicals , respectively. Based on the regioselectivities reported in Model 1, what effect do alkyl substituents at the charged/radical carbon have on the energies of these species? Is this consistent with, or opposed to, their effect on R 3C+ and R 3C• species? 4. The geometry of a vinyl cation can be anticipated using VSEPR. Count electron domains in the cation below and predict all of the HCC bond angles. -
Catalytic, Thermal, Regioselective Functionalization of Alkanes and Arenes with Borane Reagents
ACS Symposium Series 885, Activation and Functionalization of C-H Bonds, Karen I. Goldberg and Alan S. Goldman, eds. 2004. CHAP TER 8 Catalytic, Thermal, Regioselective Functionalization of Alkanes and Arenes with Borane Reagents John F. Hartwig Department of Chemistry, Yale University, New Haven, Connecticut 06520-8107 Work in the author’s group that has led to a regioselective catalytic borylation of alkanes at the terminal position is summarized. Early findings on the photochemical, stoichiometric functionalization of arenes and alkanes and the successful extension of this work to a catalytic functionalization of alkanes under photochemical conditions is presented first. The discovery of complexes that catalyze the functionalization of alkanes to terminal alkylboronate esters is then presented, along with mechanistic studies on these system and computational work on the stoichiometric reactions of isolated metal-boryl compounds with alkanes. Parallel results on the development of catalysts and a mechanistic understanding of the borylation of arenes under mild conditions to form arylboronate esters are also presented. © 2004 American Chemical Society 136 137 1. Introduction Although alkanes are considered among the least reactive organic molecules, alkanes do react with simple elemental reagents such as halogens and oxygen.1,2) Thus, the conversion of alkanes to functionalized molecules at low temperatures with control of selectivity and at low temperatures is a focus for development of catalytic processes.(3) In particular the conversion of an alkane to a product with a functional group at the terminal position has been a longstanding goal (eq. 1). Terminal alcohols such as n-butanol and terminal amines, such as hexamethylene diamine, are major commodity chemicals(4) that are produced from reactants several steps downstream from alkane feedstocks. -
Boranes in Organic Chemistry 2. Β-Aminoalkyl- and Β-Sulfanylalkylboranes in Organic Synthesis V.M
Eurasian ChemTech Journal 4 (2002) 153-167 Boranes in Organic Chemistry 2. β-Aminoalkyl- and β-sulfanylalkylboranes in organic synthesis V.M. Dembitsky1, G.A. Tolstikov2*, M. Srebnik1 1Department of Pharmaceutical Chemistry and Natural Products, School of Pharmacy, P.O. Box 12065, The Hebrew University of Jerusalem, Jerusalem 91120, Israel 2Novosibirsk Institute of Organic Chemistry SB RAS, 9, Lavrentieva Ave., Novosibirsk, 630090, Russia Abstract Problems on using of β-aminoalkyl- and β-sulfanylalkylboranes in organic synthesis are considered in this review. The synthesis of boron containing α-aminoacids by Curtius rearrangement draws attention. The use of β-aminoalkylboranes available by enamine hydroboration are described. Examples of enamine desamination with the formation of alkenes, aminoalcohols and their transfor- mations into allylic alcohol are presented. These conversions have been carried out on steroids and nitro- gen containing heterocyclic compounds. The dihydroboration of N-vinyl-carbamate and N-vinyl-urea have been described. Examples using nitrogen and oxygen containing boron derivatives for introduction of boron functions were presented. The route to borylhydrazones by hydroboration of enehydrazones was envisaged. The possibility of trialkylamine hydroboration was shown on indole alkaloids and 11-azatricyclo- [6.2.11,802,7]2,4,6,9-undecatetraene examples. The synthesis of β-sulfanyl-alkylboranes by various routes was described. The synthesis of boronic thioaminoacids was carried out by free radical thiilation of dialkyl-vinyl- boronates. Ethoxyacetylene has been shown smoothly added 1-ethylthioboracyclopentane. Derivatives of 1,4-thiaborinane were readily obtained by divinylboronate hydroboration. Dialkylvinylboronates react with mercaptoethanol with the formation of 1,5,2-oxathioborepane derivatives. Stereochemistry of thiavinyl esters hydroboration leading to stereoisomeric β-sulfanylalkylboranes are discussed. -
Reactivity Landscape of Pyruvate Under Simulated Hydrothermal Vent
Reactivity landscape of pyruvate under simulated SEE COMMENTARY hydrothermal vent conditions Yehor Novikova and Shelley D. Copleyb,c,1 aDepartment of Chemistry and Biochemistry, bDepartment of Molecular, Cellular, and Developmental Biology, and cCooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, Boulder, CO 80309 Edited by Paul G. Falkowski, Rutgers, The State University of New Jersey, New Brunswick, NJ, and approved June 14, 2013 (received for review March 14, 2013) Pyruvate is an important “hub” metabolite that is a precursor for concentrations of many components (4). Fig. 1 shows an example in amino acids, sugars, cofactors, and lipids in extant metabolic net- which the availability of catalysts for different steps in a network works. Pyruvate has been produced under simulated hydrother- results in significantly different network topologies and accumu- mal vent conditions from alkyl thiols and carbon monoxide in the lation of different products. Network topology also depends on the presence of transition metal sulfides at 250 °C [Cody GD et al. set of reagents available and the concentrations of those reagents. K (2000) Science 289(5483):1337–1340], so it is plausible that pyru- For example, the network depicted in Fig. 1 would form only and M H J M vate was formed in hydrothermal systems on the early earth. We if no were available, and would form only and if the concentration of H were very high (assuming equal rate constants report here that pyruvate reacts readily in the presence of transi- D tion metal sulfide minerals under simulated hydrothermal vent for the partitioning of between the two possible pathways). -
Introduction to Ionic Mechanisms Part I: Fundamentals of Bronsted-Lowry Acid-Base Chemistry
INTRODUCTION TO IONIC MECHANISMS PART I: FUNDAMENTALS OF BRONSTED-LOWRY ACID-BASE CHEMISTRY HYDROGEN ATOMS AND PROTONS IN ORGANIC MOLECULES - A hydrogen atom that has lost its only electron is sometimes referred to as a proton. That is because once the electron is lost, all that remains is the nucleus, which in the case of hydrogen consists of only one proton. The large majority of organic reactions, or transformations, involve breaking old bonds and forming new ones. If a covalent bond is broken heterolytically, the products are ions. In the following example, the bond between carbon and oxygen in the t-butyl alcohol molecule breaks to yield a carbocation and hydroxide ion. H3C CH3 H3C OH H3C + OH CH3 H3C A tertiary Hydroxide carbocation ion The full-headed curved arrow is being used to indicate the movement of an electron pair. In this case, the two electrons that make up the carbon-oxygen bond move towards the oxygen. The bond breaks, leaving the carbon with a positive charge, and the oxygen with a negative charge. In the absence of other factors, it is the difference in electronegativity between the two atoms that drives the direction of electron movement. When pushing arrows, remember that electrons move towards electronegative atoms, or towards areas of electron deficiency (positive, or partial positive charges). The electron pair moves towards the oxygen because it is the more electronegative of the two atoms. If we examine the outcome of heterolytic bond cleavage between oxygen and hydrogen, we see that, once again, oxygen takes the two electrons because it is the more electronegative atom. -
Infrared Spectroscopy of Protonated Acetic Acid
Probing Elusive Cations: Infrared Spectroscopy of Protonated Acetic Acid Julia A. Davies,a) Nicholas A. Besley,b) Shengfu Yanga) and Andrew M. Ellisa),* a) Department of Chemistry, University of Leicester, University Road, Leicester, LE1 7RH, UK b) School of Chemistry, University of Nottingham, University Park, Nottingham, NG7 2RD, UK *Corresponding author: Email: [email protected] Manuscript submitted to The Journal of Physical Chemistry Letters 1 Abstract Protonated carboxylic acids, (RCOOH)H+, are the initial intermediates in acid-catalyzed (Fischer) esterification reactions. However the identity of the isomeric form is under debate. Surprisingly, no optical spectra have been reported for any isomer of the protonated carboxylic acid monomer, despite it being a fundamental organic cation. Here, we address these issues by using a new approach to prepare cold He-tagged cations of protonated acetic acid (AA), which entails electron ionization of helium nanodroplets containing metastable dimers of AA. The protonated species is subsequently probed using infrared photodissociation spectroscopy and, following a comparison with calculations, we identify the two isomers whose roles are debated in Fischer esterification. These are the carbonyl-protonated E,Z isomer and the metastable hydroxyl-protonated isomer. Our technique provides a novel approach that can be applied to other elusive ionic species. TOC Graphic 2 The mechanism of the acid-catalyzed (Fischer) esterification of carboxylic acids was first explored in detail in the 1930s.1,2 This early mechanistic work suggested that initial protonation occurs at the hydroxyl oxygen atom. In the case of an acetic acid monomer (AA), this leads to formation of the structure labelled as prot-OH in Figure 1. -
Chapter 13 Group 13 Elements
Chapter 13 Group 13 Elements Physical Properties Metals Halides, oxides, hydroxides, salts of oxoacids Compounds containing nitrogen Metal boride Electron deficient borane and carborane clusters: an introduction 1 Borax Boron Relative abundances of the group 13 elements in the Earth’s crust. http://www.astro.virginia.edu/class/oconnell/LBT/ Abundances of elements in the Earth’s crusts. 2 Production of aluminium in the US between 1960 and 2008. World production (estimated) and US consumption of gallium between 1980 and 2008 3 Uses of aluminium in the US in 2008 Uses of boron in the US in 2008 Some physical properties of the group 13 elements, M, and their ions. 4 Some physical properties of the group 13 elements, M, and their ions. (Continued) α Part of one layer of the infinite lattice of -rhombohedral boron, showing the B 12 - icosahedral building blocks which are covalently linked to give a rigid, infinite lattice. 5 B 12 B12 +12B B60 B84 = B 12 B12 B60 β The construction of the B 84 -unit, the main building block of the infinite lattice of - rhombohedral boron. (a) In the centre of the unit is a B 12 -icosahedron, and (b) to each of these 12, another boron atom is covalently bonded. (c) A B60 -cage is the outer ‘skin’ of the B 84 -unit. (d) The final B 84 -unit can be described in terms of covalently bonded sub-units (B 12 )(B 12 )(B 60 ). Neutral Group 13 Hydrides Molecular compounds – BnHm B2H6 Delocalized 3-center 2-electron B-H-B interactions 6 Selected reactions of B 2H6 and Ga 2H6 GaBH 6 Gas Phase Solid State Part of one chain of the polymeric structure of crystalline GaBH 6 (X-ray diffraction at 110 K) 7 Adducts of GaH 3 t Formation of adducts RH 2N•GaH 3 (R = Me, Bu) − [Al 2H6(THF) 2] [Al(BH 4)3] [Al(BH 4)4] 8 π The formation of partial -bonds in a trigonal planar BX 3 molecule Reaction of BX 3 with a Lewis base Boron Halide Clusters B4Cl 4 B8Cl 8 B9Br 9 The family of BnXn (X = Cl, Br, I) molecules possess cluster structures. -
Protonation Patterns in Reduced and Oxidized Forms of Electron Transfer Proteins
Protonation patterns in reduced and oxidized forms of electron transfer proteins Dissertation For the award of the degree “doctor rerum naturalium” Division of Mathematics and Natural Sciences of the Georg-August-Universit¨at G¨ottingen submitted by Plamen Dobrev from Harmanli G¨ottingen 2012 Prof. Dr. Helmut Grubm¨uller (Reviewer) Department of Theoretical and Computational Biophysics, Max Planck In- stitute for Biophysical Chemistry G¨ottingen Prof. Dr. Marcus M¨uller (Reviewer) Institute for Theoretical Physics, Georg August University G¨ottingen Prof. Dr. Claudia Steinem Institute for Organic and Biomolecular Chemistry, Georg August University G¨ottingen Date of the oral examination: 08.05.2012 1 It is declared that the presented thesis has been written independently and with no other sources and aids than quoted. G¨ottingen, 10.04.2012 Plamen Dobrev 2 Contents 1 Introduction 6 2 Theory and Methods 13 2.1 Moleculardynamics........................ 13 2.2 pKa calculations of an acid in solution . 15 2.3 Free Energy calculation of deprotonation of an amino acid in MDsimulation .......................... 17 2.4 pKa calculation of ionizable groups in proteins using constant pHMD .............................. 19 2.5 Construction of the model compounds and the titratable amino acidsintheprotein ........................ 23 2.5.1 Residues with Carboxyl titratable group . 24 2.5.2 Histidine . 26 2.5.3 Tyrosine.......................... 27 2.5.4 Modelcompounds.. .. 27 2.6 Keeping the simulation box neutral upon protonation or de- protonation ............................ 29 2.6.1 Thechangeoftheionicstrength. 29 2.6.2 Restraing the coupled water molecules and the entropy change due tothe restraining potential . 30 3 2.6.3 Distance between the titrating site and the coupled watermolecule ..................... -
Intact Carbonic Acid Is a Viable Protonating Agent for Biological Bases
Intact carbonic acid is a viable protonating agent for biological bases Daniel Aminova, Dina Pinesa, Philip M. Kieferb, Snehasis Daschakrabortyb,1, James T. Hynesb,c,2, and Ehud Pinesa,2 aDepartment of Chemistry, Ben-Gurion University of the Negev, 84105 Beer-Sheva, Israel; bDepartment of Chemistry, University of Colorado Boulder, Boulder, CO 80309-0215; and cPASTEUR, Départmente de Chimie, Ecole Normale Supérieure, PSL Research University, Sorbonne Université, UPMC Université Paris 06, CNRS, 75005 Paris, France Contributed by James T. Hynes, August 28, 2019 (sent for review June 3, 2019; reviewed by Graham R. Fleming and Sharon Hammes-Schiffer) Carbonic acid H2CO3 (CA) is a key constituent of the universal CA/ plasma’s buffer capacity and about 53% of the whole blood ca- bicarbonate/CO2 buffer maintaining the pH of both blood and the pacity (16, 17) and, as the blood’s “front-line” buffer, is extremely oceans. Here we demonstrate the ability of intact CA to quantita- important for human physiology (7, 8). It is regulated in the body by tively protonate bases with biologically-relevant pKas and argue one of nature’s most efficient enzymes, carbonic anhydrase (18, 19). that CA has a previously unappreciated function as a major source − It is crucial that the very large HCO3 concentration (26 through of protons in blood plasma. We determine with high precision the 28 mM) (1, 2, 7–9) in equilibrium with CA makes CA a permanent = − + + temperature dependence of pKa(CA), pKa(T) 373.604 16,500/T factor in the plasma, with an equilibrium 2–3 μM concentration, 56.478 ln T.