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Use of Solvents for Pahs Extraction and Enhancement of the Pahs Bioremediation in Coal- Tar-Contaminated Soils Pak-Hing Lee Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 2000 Use of solvents for PAHs extraction and enhancement of the PAHs bioremediation in coal- tar-contaminated soils Pak-Hing Lee Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Environmental Engineering Commons Recommended Citation Lee, Pak-Hing, "Use of solvents for PAHs extraction and enhancement of the PAHs bioremediation in coal-tar-contaminated soils " (2000). Retrospective Theses and Dissertations. 13912. https://lib.dr.iastate.edu/rtd/13912 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter fece, while others may be from any type of computer printer. The quality of this reproduction is dependent upon the quaiity of the copy submitted. Broken or indistinct print colored or poor quality illustrations and photographs, print bleedthrough, substeindard margins, and improper alignment can adversely affect reproduction. In the unlilcely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. -
EPA Method 8315A (SW-846): Determination of Carbonyl Compounds by High Performance Liquid Chromatography (HPLC)
METHOD 8315A DETERMINATION OF CARBONYL COMPOUNDS BY HIGH PERFORMANCE LIQUID CHROMATOGRAPHY (HPLC) 1.0 SCOPE AND APPLICATION 1.1 This method provides procedures for the determination of free carbonyl compounds in various matrices by derivatization with 2,4-dinitrophenylhydrazine (DNPH). The method utilizes high performance liquid chromatography (HPLC) with ultraviolet/visible (UV/vis) detection to identify and quantitate the target analytes. This method includes two procedures encompassing all aspects of the analysis (extraction to determination of concentration). Procedure 1 is appropriate for the analysis of aqueous, soil and waste samples and stack samples collected by Method 0011. Procedure 2 is appropriate for the analysis of indoor air samples collected by Method 0100. The list of target analytes differs by procedure. The appropriate procedure for each target analyte is listed in the table below. Compound CAS No. a Proc. 1b Proc. 2 b Acetaldehyde 75-07-0 X X Acetone 67-64-1 X Acrolein 107-02-8 X Benzaldehyde 100-52-7 X Butanal (Butyraldehyde) 123-72-8 X X Crotonaldehyde 123-73-9 X X Cyclohexanone 108-94-1 X Decanal 112-31-2 X 2,5-Dimethylbenzaldehyde 5779-94-2 X Formaldehyde 50-00-0 X X Heptanal 111-71-7 X Hexanal (Hexaldehyde) 66-25-1 X X Isovaleraldehyde 590-86-3 X Nonanal 124-19-6 X Octanal 124-13-0 X Pentanal (Valeraldehyde) 110-62-3 X X Propanal (Propionaldehyde) 123-38-6 X X m-Tolualdehyde 620-23-5 X X o-Tolualdehyde 529-20-4 X p-Tolualdehyde 104-87-0 X a Chemical Abstract Service Registry Number. -
Reactivity Landscape of Pyruvate Under Simulated Hydrothermal Vent
Reactivity landscape of pyruvate under simulated SEE COMMENTARY hydrothermal vent conditions Yehor Novikova and Shelley D. Copleyb,c,1 aDepartment of Chemistry and Biochemistry, bDepartment of Molecular, Cellular, and Developmental Biology, and cCooperative Institute for Research in Environmental Sciences, University of Colorado Boulder, Boulder, CO 80309 Edited by Paul G. Falkowski, Rutgers, The State University of New Jersey, New Brunswick, NJ, and approved June 14, 2013 (received for review March 14, 2013) Pyruvate is an important “hub” metabolite that is a precursor for concentrations of many components (4). Fig. 1 shows an example in amino acids, sugars, cofactors, and lipids in extant metabolic net- which the availability of catalysts for different steps in a network works. Pyruvate has been produced under simulated hydrother- results in significantly different network topologies and accumu- mal vent conditions from alkyl thiols and carbon monoxide in the lation of different products. Network topology also depends on the presence of transition metal sulfides at 250 °C [Cody GD et al. set of reagents available and the concentrations of those reagents. K (2000) Science 289(5483):1337–1340], so it is plausible that pyru- For example, the network depicted in Fig. 1 would form only and M H J M vate was formed in hydrothermal systems on the early earth. We if no were available, and would form only and if the concentration of H were very high (assuming equal rate constants report here that pyruvate reacts readily in the presence of transi- D tion metal sulfide minerals under simulated hydrothermal vent for the partitioning of between the two possible pathways). -
Introduction to Ionic Mechanisms Part I: Fundamentals of Bronsted-Lowry Acid-Base Chemistry
INTRODUCTION TO IONIC MECHANISMS PART I: FUNDAMENTALS OF BRONSTED-LOWRY ACID-BASE CHEMISTRY HYDROGEN ATOMS AND PROTONS IN ORGANIC MOLECULES - A hydrogen atom that has lost its only electron is sometimes referred to as a proton. That is because once the electron is lost, all that remains is the nucleus, which in the case of hydrogen consists of only one proton. The large majority of organic reactions, or transformations, involve breaking old bonds and forming new ones. If a covalent bond is broken heterolytically, the products are ions. In the following example, the bond between carbon and oxygen in the t-butyl alcohol molecule breaks to yield a carbocation and hydroxide ion. H3C CH3 H3C OH H3C + OH CH3 H3C A tertiary Hydroxide carbocation ion The full-headed curved arrow is being used to indicate the movement of an electron pair. In this case, the two electrons that make up the carbon-oxygen bond move towards the oxygen. The bond breaks, leaving the carbon with a positive charge, and the oxygen with a negative charge. In the absence of other factors, it is the difference in electronegativity between the two atoms that drives the direction of electron movement. When pushing arrows, remember that electrons move towards electronegative atoms, or towards areas of electron deficiency (positive, or partial positive charges). The electron pair moves towards the oxygen because it is the more electronegative of the two atoms. If we examine the outcome of heterolytic bond cleavage between oxygen and hydrogen, we see that, once again, oxygen takes the two electrons because it is the more electronegative atom. -
Acetonitrile
Fact Sheet Acetonitrile What is Acetonitrile Acetonitrile is a toxic, colorless liquid with an ether-like odor and a sweet, burnt taste. It is an extremely dangerous substance and must be handled with caution as it can cause severe health effects and/or death. It is also known as cyanomethane, ethyl nitrile, ethanenitrile, methanecarbonitrile, acetronitrile cluster and methyl cyanide. Acetonitrile is easily ignited by heat, sparks or flames and gives off highly toxic hydrogen cyanide fumes when heated. It dissolves easily in water. It can react with water, steam or acids to produce flammable vapors that can from explosive mixtures when exposed to air. The vapors are heavier than air and can travel to low or confined areas. Containers of the liquid can explode when heated. Acetonitrile is used to make pharmaceuticals, perfumes, rubber products, pesticides, acrylic nail removers and batteries. It is also used to extract fatty acids from animal and vegetable oils. Before working with acetonitrile, employee training must be provided on safe handling and storage procedures. Pregnant women should avoid contact with acetonitrile. Exposure Exposure usually occurs in the industries where acetonitrile is produced or used. Though unlikely, the general population may be exposed by due to chemical spills, accidents or releases. It is also found in cigarette smoke and automobile exhaust. Acetonitrile changes to cyanide with the body. Route of exposure can occur by: . Breathing ─Inhalation of acetonitrile vapors can cause adverse health effects. Eating/Drinking ─Ingestion of acetonitrile is not a likely route of exposure due to its irritating effects. Skin/Eye Contact ─Acetonitrile vapors and liquids can be absorbed through the skin or eyes. -
An Extractive Distillation System for Benzene-Acetonitrile Separation Using Dimethyl Sulfoxide As an Entrainer Bloch Sohil Y
An Extractive Distillation System for Benzene-Acetonitrile Separation Using Dimethyl Sulfoxide as an Entrainer Bloch Sohil Y. & Mehulkumar Sutariya Sardar Vallabhbhai National Institute of Technology, Surat Email: [email protected] Unit System: Pressure-Kpa; Molar Flow-kg/hr; Other-SI Background Hydrocarbons like Acetonitrile and Benzene are important raw materials in the manufacturing of polymeric products and as a solvent. They often require high-purity Acetonitrile and Benzene. Acetonitrile is widely used mainly as a solvent in the purification of butadiene in refineries it is widely used in battery applications because of its relatively high dielectric constant and ability to dissolve electrolytes. For similar reasons it is a popular solvent in cyclic voltammetry. Acetonitrile plays a significant role as the dominant solvent used in the manufacture of DNA oligonucleotides from monomers.Industrially, it is used as a solvent for the manufacture of pharmaceuticals and photographic film.The mixer of Acetonitrile and Benzene can not be seperated out by the simple distillation column because of the less difference between their boiling point (near 1.5 K) and same boiling point behaviour of azeotrope. Extractive Distillation of Close Boiling Compounds Extractive distillation is the method of separating close boiling compounds from each other by carrying out the distillation in a multiple columns in the presence of an added liquid or liquid mixture.1 This Liquid or Liquid mixture is known as extractive agent or entrainer. The presence of the entrainer alter the volatility of compounds and thus the degree of separation is increase with the same numbers of plate. This entrainer must have high boiling point than the compounds which are going to separated. -
Infrared Spectroscopy of Protonated Acetic Acid
Probing Elusive Cations: Infrared Spectroscopy of Protonated Acetic Acid Julia A. Davies,a) Nicholas A. Besley,b) Shengfu Yanga) and Andrew M. Ellisa),* a) Department of Chemistry, University of Leicester, University Road, Leicester, LE1 7RH, UK b) School of Chemistry, University of Nottingham, University Park, Nottingham, NG7 2RD, UK *Corresponding author: Email: [email protected] Manuscript submitted to The Journal of Physical Chemistry Letters 1 Abstract Protonated carboxylic acids, (RCOOH)H+, are the initial intermediates in acid-catalyzed (Fischer) esterification reactions. However the identity of the isomeric form is under debate. Surprisingly, no optical spectra have been reported for any isomer of the protonated carboxylic acid monomer, despite it being a fundamental organic cation. Here, we address these issues by using a new approach to prepare cold He-tagged cations of protonated acetic acid (AA), which entails electron ionization of helium nanodroplets containing metastable dimers of AA. The protonated species is subsequently probed using infrared photodissociation spectroscopy and, following a comparison with calculations, we identify the two isomers whose roles are debated in Fischer esterification. These are the carbonyl-protonated E,Z isomer and the metastable hydroxyl-protonated isomer. Our technique provides a novel approach that can be applied to other elusive ionic species. TOC Graphic 2 The mechanism of the acid-catalyzed (Fischer) esterification of carboxylic acids was first explored in detail in the 1930s.1,2 This early mechanistic work suggested that initial protonation occurs at the hydroxyl oxygen atom. In the case of an acetic acid monomer (AA), this leads to formation of the structure labelled as prot-OH in Figure 1. -
NMR Chemical Shifts of Common Laboratory Solvents As Trace Impurities
7512 J. Org. Chem. 1997, 62, 7512-7515 NMR Chemical Shifts of Common Laboratory Solvents as Trace Impurities Hugo E. Gottlieb,* Vadim Kotlyar, and Abraham Nudelman* Department of Chemistry, Bar-Ilan University, Ramat-Gan 52900, Israel Received June 27, 1997 In the course of the routine use of NMR as an aid for organic chemistry, a day-to-day problem is the identifica- tion of signals deriving from common contaminants (water, solvents, stabilizers, oils) in less-than-analyti- cally-pure samples. This data may be available in the literature, but the time involved in searching for it may be considerable. Another issue is the concentration dependence of chemical shifts (especially 1H); results obtained two or three decades ago usually refer to much Figure 1. Chemical shift of HDO as a function of tempera- more concentrated samples, and run at lower magnetic ture. fields, than today’s practice. 1 13 We therefore decided to collect H and C chemical dependent (vide infra). Also, any potential hydrogen- shifts of what are, in our experience, the most popular bond acceptor will tend to shift the water signal down- “extra peaks” in a variety of commonly used NMR field; this is particularly true for nonpolar solvents. In solvents, in the hope that this will be of assistance to contrast, in e.g. DMSO the water is already strongly the practicing chemist. hydrogen-bonded to the solvent, and solutes have only a negligible effect on its chemical shift. This is also true Experimental Section for D2O; the chemical shift of the residual HDO is very NMR spectra were taken in a Bruker DPX-300 instrument temperature-dependent (vide infra) but, maybe counter- (300.1 and 75.5 MHz for 1H and 13C, respectively). -
Protonation Patterns in Reduced and Oxidized Forms of Electron Transfer Proteins
Protonation patterns in reduced and oxidized forms of electron transfer proteins Dissertation For the award of the degree “doctor rerum naturalium” Division of Mathematics and Natural Sciences of the Georg-August-Universit¨at G¨ottingen submitted by Plamen Dobrev from Harmanli G¨ottingen 2012 Prof. Dr. Helmut Grubm¨uller (Reviewer) Department of Theoretical and Computational Biophysics, Max Planck In- stitute for Biophysical Chemistry G¨ottingen Prof. Dr. Marcus M¨uller (Reviewer) Institute for Theoretical Physics, Georg August University G¨ottingen Prof. Dr. Claudia Steinem Institute for Organic and Biomolecular Chemistry, Georg August University G¨ottingen Date of the oral examination: 08.05.2012 1 It is declared that the presented thesis has been written independently and with no other sources and aids than quoted. G¨ottingen, 10.04.2012 Plamen Dobrev 2 Contents 1 Introduction 6 2 Theory and Methods 13 2.1 Moleculardynamics........................ 13 2.2 pKa calculations of an acid in solution . 15 2.3 Free Energy calculation of deprotonation of an amino acid in MDsimulation .......................... 17 2.4 pKa calculation of ionizable groups in proteins using constant pHMD .............................. 19 2.5 Construction of the model compounds and the titratable amino acidsintheprotein ........................ 23 2.5.1 Residues with Carboxyl titratable group . 24 2.5.2 Histidine . 26 2.5.3 Tyrosine.......................... 27 2.5.4 Modelcompounds.. .. 27 2.6 Keeping the simulation box neutral upon protonation or de- protonation ............................ 29 2.6.1 Thechangeoftheionicstrength. 29 2.6.2 Restraing the coupled water molecules and the entropy change due tothe restraining potential . 30 3 2.6.3 Distance between the titrating site and the coupled watermolecule ..................... -
Intact Carbonic Acid Is a Viable Protonating Agent for Biological Bases
Intact carbonic acid is a viable protonating agent for biological bases Daniel Aminova, Dina Pinesa, Philip M. Kieferb, Snehasis Daschakrabortyb,1, James T. Hynesb,c,2, and Ehud Pinesa,2 aDepartment of Chemistry, Ben-Gurion University of the Negev, 84105 Beer-Sheva, Israel; bDepartment of Chemistry, University of Colorado Boulder, Boulder, CO 80309-0215; and cPASTEUR, Départmente de Chimie, Ecole Normale Supérieure, PSL Research University, Sorbonne Université, UPMC Université Paris 06, CNRS, 75005 Paris, France Contributed by James T. Hynes, August 28, 2019 (sent for review June 3, 2019; reviewed by Graham R. Fleming and Sharon Hammes-Schiffer) Carbonic acid H2CO3 (CA) is a key constituent of the universal CA/ plasma’s buffer capacity and about 53% of the whole blood ca- bicarbonate/CO2 buffer maintaining the pH of both blood and the pacity (16, 17) and, as the blood’s “front-line” buffer, is extremely oceans. Here we demonstrate the ability of intact CA to quantita- important for human physiology (7, 8). It is regulated in the body by tively protonate bases with biologically-relevant pKas and argue one of nature’s most efficient enzymes, carbonic anhydrase (18, 19). that CA has a previously unappreciated function as a major source − It is crucial that the very large HCO3 concentration (26 through of protons in blood plasma. We determine with high precision the 28 mM) (1, 2, 7–9) in equilibrium with CA makes CA a permanent = − + + temperature dependence of pKa(CA), pKa(T) 373.604 16,500/T factor in the plasma, with an equilibrium 2–3 μM concentration, 56.478 ln T. -
Stability Studies of Selected Polycyclic Aromatic Hydrocarbons in Different Organic Solvents and Identification of Their Transformation Products
Polish J. of Environ. Stud. Vol. 17, No. 1 (2008), 17-24 Original Research Stability Studies of Selected Polycyclic Aromatic Hydrocarbons in Different Organic Solvents and Identification of Their Transformation Products D. Dąbrowska1, A. Kot-Wasik2, J. Namieśnik*2 1Polish geological institute, Central Chemical laboratory, warsaw, Poland 2Department of Analytical Chemistry, gdansk university of technology, ul. Narutowicza 11/12, 80-892 gdańsk, Poland Received: May 7, 2007 Accepted: October 1, 2007 Abstract one of the problems in an hPlC laboratory is the preservation of samples and extracts prior to analysis without any changes. It has been found that degradation processes cannot be eliminated entirely, but they can be slowed down considerably. Photodegradation kinetics of fluorene, anthracene and benzo(a)pyrene were studied in various organic solvents. Solvents known as good media to store PAhs for a long time were selected with respect to avoid degradation. in the case of fluorene, 9-fluorenone and 9-hydroxyfluorene were detected as main photoproducts. Formation of anthraquinone and 1,8-dihydroxyanthraquinone during the degradation of anthracene was observed. Benzo(a)pyrene-4,5-dihydrodiol and one of the isomers of hydroxy-BaP-dione as products of benzo(a)pyrene photodegradation have been identified. Keywords: polycyclic aromatic hydrocarbons, photodegradation, degradation products, sample stability Introduction 4 or more rings and their metabolites, have a variety of mutagenic and carcinogenic effects on microorganisms, Polycyclic aromatic hydrocarbons (PAhs) are ubiq- plants and animals, and are classified as compounds with uitous contaminants originating from natural and anthro- significant human health risks [6]. pogenic pyrolysis of organic matter such as forest fires, In the environment, primary removal processes of low automobile exhaust, coal and oil refining processes.t heir molecular weight PAhs are microbial degradation and abundance and persistence in several polluted environ- evaporation. -
Methylation Deficiency Disrupts Biological Rhythms from Bacteria To
ARTICLE https://doi.org/10.1038/s42003-020-0942-0 OPEN Methylation deficiency disrupts biological rhythms from bacteria to humans ✉ Jean-Michel Fustin 1,16,18 , Shiqi Ye1,18, Christin Rakers 2, Kensuke Kaneko3, Kazuki Fukumoto1, Mayu Yamano1, Marijke Versteven4, Ellen Grünewald5, Samantha J. Cargill5, T. Katherine Tamai 6, Yao Xu7, Maria Luísa Jabbur7, Rika Kojima8, Melisa L. Lamberti9, Kumiko Yoshioka-Kobayashi10, David Whitmore 11, 1234567890():,; Stephanie Tammam12, P. Lynne Howell 12,13, Ryoichiro Kageyama10, Takuya Matsuo14, Ralf Stanewsky 4, Diego A. Golombek9, Carl Hirschie Johnson7, Hideaki Kakeya 3, Gerben van Ooijen 5 & ✉ Hitoshi Okamura15,17 The methyl cycle is a universal metabolic pathway providing methyl groups for the methy- lation of nuclei acids and proteins, regulating all aspects of cellular physiology. We have previously shown that methyl cycle inhibition in mammals strongly affects circadian rhythms. Since the methyl cycle and circadian clocks have evolved early during evolution and operate in organisms across the tree of life, we sought to determine whether the link between the two is also conserved. Here, we show that methyl cycle inhibition affects biological rhythms in species ranging from unicellular algae to humans, separated by more than 1 billion years of evolution. In contrast, the cyanobacterial clock is resistant to methyl cycle inhibition, although we demonstrate that methylations themselves regulate circadian rhythms in this organism. Mammalian cells with a rewired bacteria-like methyl cycle are protected, like cyanobacteria, from methyl cycle inhibition, providing interesting new possibilities for the treatment of methylation deficiencies. 1 Graduate School of Pharmaceutical Sciences, Laboratory of Molecular Metabology, Kyoto University, Kyoto, Japan.