Genetics, a Mating Experiment Called a Reciprocal Cross Is Performed to Test If an Animal's Trait Is Sex-Linked
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Downloaded from [266]
Patterns of DNA methylation on the human X chromosome and use in analyzing X-chromosome inactivation by Allison Marie Cotton B.Sc., The University of Guelph, 2005 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in The Faculty of Graduate Studies (Medical Genetics) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) January 2012 © Allison Marie Cotton, 2012 Abstract The process of X-chromosome inactivation achieves dosage compensation between mammalian males and females. In females one X chromosome is transcriptionally silenced through a variety of epigenetic modifications including DNA methylation. Most X-linked genes are subject to X-chromosome inactivation and only expressed from the active X chromosome. On the inactive X chromosome, the CpG island promoters of genes subject to X-chromosome inactivation are methylated in their promoter regions, while genes which escape from X- chromosome inactivation have unmethylated CpG island promoters on both the active and inactive X chromosomes. The first objective of this thesis was to determine if the DNA methylation of CpG island promoters could be used to accurately predict X chromosome inactivation status. The second objective was to use DNA methylation to predict X-chromosome inactivation status in a variety of tissues. A comparison of blood, muscle, kidney and neural tissues revealed tissue-specific X-chromosome inactivation, in which 12% of genes escaped from X-chromosome inactivation in some, but not all, tissues. X-linked DNA methylation analysis of placental tissues predicted four times higher escape from X-chromosome inactivation than in any other tissue. Despite the hypomethylation of repetitive elements on both the X chromosome and the autosomes, no changes were detected in the frequency or intensity of placental Cot-1 holes. -
Experiment 1: Linkage Mapping in Drosophila Melanogaster
BIO 184 Laboratory Manual Page 1 CSU, Sacramento Updated: 9/1/2004 EXPERIMENT 1: LINKAGE MAPPING IN DROSOPHILA MELANOGASTER DAY ONE: INTRODUCTION TO DROSOPHILA OBJECTIVES: Today's laboratory will introduce you the common fruit fly, Drosophila melanogaster, as an experimental organism and prepare you for setting up a mating experiment during the next lab period. After today’s experiment you should be able to: Properly anesthetize and handle Drosophila. Properly adjust a stereo dissecting scope and light source for optimal viewing of Drosophila. Distinguish males and females, and have a record for your own reference. Distinguish wild-type from mutant characteristics and have a record for your own reference. Understand the meaning of “single, double, triple, and multiple mutants.” Be familiar with symbols for mutant and wild-type alleles used by Drosophila geneticists. INTRODUCTION: Drosophila melanogaster is used extensively in genetic breeding experiments. It is an ideal testing organism for geneticists because it has a short life cycle, exhibits great variability in inherited characteristics, and may be conveniently raised in the laboratory to produce large numbers of offspring. Drosophila can be used in genetic crosses to demonstrate Mendelian inheritance as well as the unusual inheritance of genes located on the X chromosome (“sex linkage”). The organism is also useful for demonstrating the principles of genetic mapping, which you will be exploring in this first experiment. To do this, you will be performing a cross with real flies to demonstrate the principles behind genetic mapping. Your success in these experiments will depend greatly on your ability to properly handle the flies and to accurately observe their characteristics. -
Identification of Novel Genes for X-Linked Mental Retardation
20.\o. ldent¡f¡cat¡on of Novel Genes for X-linked Mental Retardation Adelaide A thesis submitted for the degree of Dootor of Philosophy to the University of by Marie Mangelsdorf BSc (Hons) School ofMedicine Department of Paediatrics, Women's and Children's Hospital May 2003 Corrections The following references should be referred to in the text as: Page 2,line 2: (Birch et al., 1970) Page 2,line 2: (Moser et al., 1983) Page 3, line 15: (Martin and Bell, 1943) Page 3, line 4 and line 9: (Stevenson et a1.,2000) Page 77,line 5: (Monaco et a|.,1986) And in the reference list as: Birch H. G., Richardson S. ,{., Baird D., Horobin, G. and Ilsley, R. (1970) Mental Subnormality in the Community: A Clinical and Epidemiological Study. Williams and Wilkins, Baltimore. Martin J. P. and Bell J. (1943). A pedigree of mental defect showing sex-linkage . J. Neurol. Psychiatry 6: 154. Monaco 4.P., Nerve R.L., Colletti-Feener C., Bertelson C.J., Kurnit D.M. and Kunkel L.M. (1986) Isolation of candidate cDNAs for portions of the Duchenne muscular dystrophy gene. Nature 3232 646-650. Moser H.W., Ramey C.T. and Leonard C.O. (1933) In Principles and Practice of Medical Genetics (Emery A.E.H. and Rimoin D.L., Eds). Churchill Livingstone, Edinburgh UK Penrose L. (1938) A clinical and genetic study of 1280 cases of mental defect. (The Colchester survey). Medical Research Council, London, UK. Stevenson R.E., Schwartz C.E. and Schroer R.J. (2000) X-linked Mental Retardation. Oxford University Press. -
Sequence Analysis in Bos Taurus Reveals Pervasiveness of X–Y Arms Races in Mammalian Lineages
Downloaded from genome.cshlp.org on September 25, 2021 - Published by Cold Spring Harbor Laboratory Press Research Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages Jennifer F. Hughes,1 Helen Skaletsky,1,2 Tatyana Pyntikova,1 Natalia Koutseva,1 Terje Raudsepp,3 Laura G. Brown,1,2 Daniel W. Bellott,1 Ting-Jan Cho,1 Shannon Dugan-Rocha,4 Ziad Khan,4 Colin Kremitzki,5 Catrina Fronick,5 Tina A. Graves-Lindsay,5 Lucinda Fulton,5 Wesley C. Warren,5,7 Richard K. Wilson,5,8 Elaine Owens,3 James E. Womack,3 William J. Murphy,3 Donna M. Muzny,4 Kim C. Worley,4 Bhanu P. Chowdhary,3,9 Richard A. Gibbs,4 and David C. Page1,2,6 1Whitehead Institute, Cambridge, Massachusetts 02142, USA; 2Howard Hughes Medical Institute, Whitehead Institute, Cambridge, Massachusetts 02142, USA; 3College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas 77843, USA; 4Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA; 5The McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri 63108, USA; 6Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142, USA Studies of Y Chromosome evolution have focused primarily on gene decay, a consequence of suppression of crossing-over with the X Chromosome. Here, we provide evidence that suppression of X–Y crossing-over unleashed a second dynamic: selfish X–Y arms races that reshaped the sex chromosomes in mammals as different as cattle, mice, and men. Using su- per-resolution sequencing, we explore the Y Chromosome of Bos taurus (bull) and find it to be dominated by massive, lin- eage-specific amplification of testis-expressed gene families, making it the most gene-dense Y Chromosome sequenced to date. -
Choroideremia* Clinical and Genetic Aspects by Arnold Sorsby, A
Br J Ophthalmol: first published as 10.1136/bjo.36.10.547 on 1 October 1952. Downloaded from Brit. J. Ophthal. (1952) 36, 547. CHOROIDEREMIA* CLINICAL AND GENETIC ASPECTS BY ARNOLD SORSBY, A. FRANCESCHETTI, RUBY JOSEPH, AND J. B. DAVEY Review of Literature (1) HISTORICAL.-In the fully-developed state, choroideremia presents a characteristic and unmistakable picture of which Fig. 1 and Colour Plate 1(a and b) may be taken as examples. The almost total lack of choroidal vessels strongly suggests a developmental anomaly. In fact most of the early writers on, the subject, such as Mauthner (1872) and Koenig (1874), stressed the likeness to choroidal coloboma. As cases accumulated, less extreme pictures were observed, and these raised the possibility that choroideremia was a progressive affection and not a congenital anomaly-a view that gained some support from the fact that, apart from showing some choroidal vessels, these less extreme cases also showed pigmentary changes, sometimes reminiscent of retinitis pigmentosa (Zorn, 1920; Beckershaus, 1926; Werkle, 1931). copyright. Furthermore, the recognition of gyrate atrophy as a separate entity (Cutler, 1895) fitted in well with such a reading. The patches of atrophy seen in that affection could well be visualized as an early stage of the generalized atrophy seen in choroideremia, and since there was some evidence that gyrate atrophy was itself a variant of retinitis pigmentosa-for the affection is reputed to have been observed in families diagnosed as suffering from retinitis pigmentosa (see Usher, 1935)-the suggestion emerged that choroideremia, far from being a congenital stationary affection, was an http://bjo.bmj.com/ extreme variant of retinitis pigmentosa. -
Molecular Evolution of a Y Chromosome to Autosome Gene Duplication in Drosophila Research Article
Molecular Evolution of a Y Chromosome to Autosome Gene Duplication in Drosophila Kelly A. Dyer,*,1 Brooke E. White,1 Michael J. Bray,1 Daniel G. Pique´,1 and Andrea J. Betancourt* ,2 1Department of Genetics, University of Georgia 2Institute of Evolutionary Biology, University of Edinburgh, Ashworth Labs, Edinburgh, United Kingdom Present address: Institute for Population Genetics, University of Veterinary Medicine Vienna, Vienna 1210, Austria *Corresponding author: [email protected], [email protected]. Associate editor: Jody Hey Abstract In contrast to the rest of the genome, the Y chromosome is restricted to males and lacks recombination. As a result, Research article Y chromosomes are unable to respond efficiently to selection, and newly formed Y chromosomes degenerate until few genes remain. The rapid loss of genes from newly formed Y chromosomes has been well studied, but gene loss from highly degenerate Y chromosomes has only recently received attention. Here, we identify and characterize a Y to autosome duplication of the male fertility gene kl-5 that occurred during the evolution of the testacea group species of Drosophila. The duplication was likely DNA based, as other Y-linked genes remain on the Y chromosome, the locations of introns are conserved, and expression analyses suggest that regulatory elements remain linked. Genetic mapping reveals that the autosomal copy of kl-5 resides on the dot chromosome, a tiny autosome with strongly suppressed recombination. Molecular evolutionary analyses show that autosomal copies of kl-5 have reduced polymorphism and little recombination. Importantly, the rate of protein evolution of kl-5 has increased significantly in lineages where it is on the dot versus Y linked. -
Chromosomes in the Clinic: the Visual Localization and Analysis of Genetic Disease in the Human Genome
University of Pennsylvania ScholarlyCommons Publicly Accessible Penn Dissertations 2013 Chromosomes in the Clinic: The Visual Localization and Analysis of Genetic Disease in the Human Genome Andrew Joseph Hogan University of Pennsylvania, [email protected] Follow this and additional works at: https://repository.upenn.edu/edissertations Part of the History of Science, Technology, and Medicine Commons Recommended Citation Hogan, Andrew Joseph, "Chromosomes in the Clinic: The Visual Localization and Analysis of Genetic Disease in the Human Genome" (2013). Publicly Accessible Penn Dissertations. 873. https://repository.upenn.edu/edissertations/873 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/edissertations/873 For more information, please contact [email protected]. Chromosomes in the Clinic: The Visual Localization and Analysis of Genetic Disease in the Human Genome Abstract This dissertation examines the visual cultures of postwar biomedicine, with a particular focus on how various techniques, conventions, and professional norms have shaped the `look', classification, diagnosis, and understanding of genetic diseases. Many scholars have previously highlighted the `informational' approaches of postwar genetics, which treat the human genome as an expansive data set comprised of three billion DNA nucleotides. Since the 1950s however, clinicians and genetics researchers have largely interacted with the human genome at the microscopically visible level of chromosomes. Mindful of this, my dissertation examines -
7.013 S18 Recitation 5
7.013: Spring 2018: MIT 7.013 Recitation 5 – Spring 2018 (Note: The recitation summary should NOT be regarded as the substitute for lectures) Summary of Lecture 6 (2/23): Classic experiment by Morgan that laid the foundation of human genetics: Morgan identified a gene located on the X chromosome that controls eye color in fruit flies. Since females have XX as their sex chromosomes, they have two alleles of each gene located on the X chromosome. In comparison, males have XY as their sex chromosomes and will only have one allele for all the genes located on the X chromosome (i.e. they are hemizygous). Morgan designed a mating experiment between a homozygous recessive female fly with white eyes (genotype XwXw) with a normal male fly with red eyes (genotype X+Y) and obtained red-eyed females (genotype XwX+) and white-eyed male flies (genotype XwY). This proved that white-eye color is a recessive trait and the allele regulating the eye color is located on the X- chromosome (i.e. eye color in flies shows an X- linked recessive mode of inheritance). You can read through the original article (link below) if interested! http://www.nature.com/scitable/topicpage/thomas-hunt-morgan-and-sex-linkage-452 Pedigrees: A pedigree shows how a trait runs through a family. A person displaying the trait is indicated by a filled in circle (female) or square (male). Simple human traits that are determined by a single gene display one of six different modes of inheritance: autosomal dominant, autosomal recessive, X-linked dominant or X-linked recessive, Y- linked recessive or dominant and mitochondrial inheritance (which is always passed on from the mother to all her children). -
Linkage Groups of Protein-Coding Genes in Western Palearctic Water Frogs Reveal Extensive Evolutionary Conservation
Copyright 0 1997 by the Genetics Society of America Linkage Groups of Protein-Coding Genes in Western Palearctic Water Frogs Reveal Extensive Evolutionary Conservation Hansjiirg Hotz,* Thomas Uzzellt and Leszek Berger: * Zoologisches Museum, Universitat Zurich-Irchel, CH-8057 Zurich, Switzerland, tAcademy of Natural Sciences, Philadelphia, Pennsylvania 19103 and $Research Centrefor Agricultural and Forest Environment, Polish Academy of Sciences, PL-60-809 Poznali, Poland Manuscript received October 14, 1996 Accepted for publication April 21, 1997 ABSTRACT Among progeny of a hybrid (Rana shqiperica X R. lessonae) X R lessonae, 14 of 22 loci form four linkage groups (LGs) : (1) mitochondrialaspartate aminotransferase, carbonate dehydratase-2, esterase 4, peptidase 0; (2) mannosephosphate isomerase, lactate dehydrogenase-B, sex, hexokinase-1, peptidase B; (3) albumin, fructose- biphosphatase-1, guanine deaminase; (4) mitochondrial superoxide dismutase, cytosolic malic enzyme, xanthine oxidase. Fructose-biphosphate aldolase-2 and cytosolic aspartate aminotransferase possibly form a fifth LG. Mito- chondrial aconitatehydratase, a-glucosidase, glyceraldehyde-3+hosphate dehydrogenase, phosphogluconate dehydroge- nase, and phosphoglucomutase-2 are unlinked to other loci. All testable linkages (among eightloci of LGs 1, 2, 3, and 4) are shared with eastern Palearctic water frogs. Including published data, 44 protein loci can be assigned to 10 of the 13 chromosomes in Holarctic Rana. Of testable pairs among 18 protein loci, agreementbetween Palearctic andNearctic Rana is complete (125 unlinked,14 linked pairs among 14 loci of five syntenies), and Holarctic Rana and Xenopus laevis are highly concordant (125 shared nonlinkages, 13 shared linkages, three differences). Several Rana syntenies occur in mammals and fish. Many syntenies apparentlyhave persisted for 60-140 X lo6years (frogs), some even for 350-400 X lo6 years (mammals and teleosts). -
©Copyright 2008 Joseph A. Ross the Evolution of Sex-Chromosome Systems in Stickleback Fishes
©Copyright 2008 Joseph A. Ross The Evolution of Sex-Chromosome Systems in Stickleback Fishes Joseph A. Ross A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Washington 2008 Program Authorized to Offer Degree: Molecular and Cellular Biology University of Washington Graduate School This is to certify that I have examined this copy of a doctoral dissertation by Joseph A. Ross and have found that it is complete and satisfactory in all respects, and that any and all revisions required by the final examining committee have been made. Chair of the Supervisory Committee: Catherine L. Peichel Reading Committee: Catherine L. Peichel Steven Henikoff Barbara J. Trask Date: In presenting this dissertation in partial fulfillment of the requirements for the doctoral degree at the University of Washington, I agree that the Library shall make its copies freely available for inspection. I further agree that extensive copying of the dissertation is allowable only for scholarly purposes, consistent with “fair use” as prescribed in the U.S. Copyright Law. Requests for copying or reproduction of this dissertation may be referred to ProQuest Information and Learning, 300 North Zeeb Road, Ann Arbor, MI 48106-1346, 1-800-521-0600, to whom the author has granted “the right to reproduce and sell (a) copies of the manuscript in microform and/or (b) printed copies of the manuscript made from microform.” Signature Date University of Washington Abstract The Evolution of Sex-Chromosome Systems in Stickleback Fishes Joseph A. Ross Chair of the Supervisory Committee: Affiliate Assistant Professor Catherine L. -
Patterns of Inheritance
Patterns of inheritance Learning goals By the end of this material you would have learnt about: How traits and characteristics are passed on from one generation to another The different patterns of inheritance Genomic or parental imprinting Observations of the way traits, or characteristics, are passed from one generation to the next in the form of identifiable phenotypes probably represent the oldest form of genetics. However, the scientific study of patterns of inheritance is conventionally said to have started with the work of the Austrian monk Gregor Mendel in the second half of the nineteenth century. In diploid organisms each body cell (or 'somatic cell') contains two copies of the genome. So each somatic cell contains two copies of each chromosome, and two copies of each gene. The exceptions to this rule are the sex chromosomes that determine sex in a given species. For example, in the XY system that is found in most mammals - including human beings - males have one X chromosome and one Y chromosome (XY) and females have two X chromosomes (XX). The paired chromosomes that are not involved in sex determination are called autosomes, to distinguish them from the sex chromosomes. Human beings have 46 chromosomes: 22 pairs of autosomes and one pair of sex chromosomes (X and Y). The different forms of a gene that are found at a specific point (or locus) along a given chromosome are known as alleles. Diploid organisms have two alleles for each autosomal gene - one inherited from the mother, one inherited from the father. Mendelian inheritance patterns Within a population, there may be a number of alleles for a given gene. -
Sex Determination in the Genus Salmo
SEX DETERMINATION IN THE GENUS SALMO by Jieying Li (李杰颖) Bachelor of Science, Simon Fraser University 2008 THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE In the Department of Molecular Biology and Biochemistry © Jieying Li 2010 SIMON FRASER UNIVERSITY Fall 2010 All rights reserved. However, in accordance with the Copyright Act of Canada, this work may be reproduced, without authorization, under the conditions for Fair Dealing. Therefore, limited reproduction of this work for the purposes of private study, research, criticism, review and news reporting is likely to be in accordance with the law, particularly if cited appropriately. Approval Name: Jieying Li Degree: Master of Science Title of Thesis: Sex determination in the genus Salmo Examining Committee: Chair: Mark Paetzel Associate Professor, Department of Molecular Biology and Biochemistry ___________________________________________ William S. Davidson Senior Supervisor Professor, Department of Molecular Biology and Biochemistry ___________________________________________ Jack Chen Supervisor Associate Professor, Department of Molecular Biology and Biochemistry ___________________________________________ Lynne Quarmby Supervisor Professor, Department of Molecular Biology and Biochemistry ___________________________________________ Robert H. Devlin Internal Examiner DFO Scientists Fisheries and Oceans Canada Date Defended/Approved: December 9, 2010 ii Declaration of Partial Copyright Licence The author, whose copyright is declared on the title page of this work, has granted to Simon Fraser University the right to lend this thesis, project or extended essay to users of the Simon Fraser University Library, and to make partial or single copies only for such users or in response to a request from the library of any other university, or other educational institution, on its own behalf or for one of its users.