Standardization of Hemagglutination Inhibition Assay for Influenza
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Red Blood Cell Preparation and Hemagglutination Assay
Red Blood Cell Preparation and Hemagglutination Assay Purpose: This protocol describes the preparation of RBCs for storage and use in Hemagluttination assays, which are used to determine the La Sota B1 lentogenic Newcastle Disease virion hemaglutinin-neuraminidase titer relative to virion stock positive controls. The protocol was adapted from McGinnes et al. (2006) and “Detection of Hemagglutinating Viruses” (n.d.). Materials: ● Whole Blood Cells ● 50mL conical tube ● Multichannel micropipette, micropipette, and tips ● PBS with 2mM Penicillin/Streptomycin ● SV3 ● Alsever’s Solution ● 96 round bottom well plate ● Microscope slide ● Virion stock ● Centrifuge Procedure: 1. RBC preparation a. Obtain 25mL whole blood and add 25mL cold Alsever’s Solution for anti-coagulation in a 50mL conical tube and keep on ice b. Centrifuge whole blood at 500 RCF for 10min c. Aspirate blood plasma, buffy layer, and top erythrocytes d. Wash 3 times by resuspending in PBS with 2mM Penicillin/Streptomycin to double the pellet volume, centrifuging at 500 RCF, and aspirating the supernatant e. Resuspend the pellet in PBS with 2mM Penicillin/Streptomycin or SV3 for a final concentration of 10% pellet volume per total volume, and store at 2-7˚C for 1 week or 42 days 2. HA Titer a. Thaw your virion stock and samples on ice b. Use a multichannel micropipette to add 50µL of cold PBS to each row on a 96 round bottom well plate for each sample in duplicates c. Add 50µL of each sample to column 1 of their respective duplicate rows i. Don’t add anything to the negative control rows and add virion stocks to the positive control rows d. -
Detection of Influenza a Viruses from Environmental Lake and Pond Ice
TITLE “DETECTION OF INFLUENZA A VIRUSES FROM ENVIRONMENTAL LAKE AND POND ICE” Zeynep A. Koçer A Dissertation Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY August 2010 Committee: Scott O. Rogers, Advisor W. Robert Midden Graduate Faculty Representative John Castello George Bullerjahn Paul Morris ii ABSTRACT Scott O. Rogers, Advisor Environmental ice is an ideal matrix for the long-term protection of organisms due to the limitation of degradative processes. As a result of global climate change, some glaciers and polar ice fields are melting at rapid rates. This process releases viable microorganisms that have been embedded in the ice, sometimes for millions of years. We propose that viral pathogens have adapted to being entrapped in ice, such that they are capable of infecting naïve hosts after melting from the ice. Temporal gene flow, which has been termed genome recycling (Rogers et al., 2004), may allow pathogens to infect large host populations rapidly. Accordingly, we hypothesize that viable influenza A virions are preserved in lake and pond ice. Our main objective was to identify influenza A (H1-H16) from the ice of a few lakes and ponds in Ohio that have high numbers of migratory and local waterfowl visiting the sites. We developed a set of hemagglutinin subtype-specific primers for use in four multiplex RT-PCR reactions. Model studies were developed by seeding environmental lake water samples in vitro with influenza A viruses and subjecting the seeded water to five freeze-thaw cycles at -20oC and -80oC. -
Research Article Isolation of a Reassortant H1N2 Swine Flu Strain of Type (Swine-Human-Avian) and Its Genetic Variability Analysis
Hindawi BioMed Research International Volume 2018, Article ID 1096079, 10 pages https://doi.org/10.1155/2018/1096079 Research Article Isolation of a Reassortant H1N2 Swine Flu Strain of Type (Swine-Human-Avian) and Its Genetic Variability Analysis Long-Bai Wang , Qiu-Yong Chen, Xue-Min Wu , Yong-Liang Che, Cheng-Yan Wang, Ru-Jing Chen, and Lun-Jiang Zhou Institute of Animal Husbandry and Veterinary Medicine, Fujian Academy of Agriculture Sciences, Fujian Animal Disease Control Technology Development Center, Fuzhou, Fujian 350013, China Correspondence should be addressed to Lun-Jiang Zhou; [email protected] Received 3 January 2018; Accepted 26 February 2018; Published 29 May 2018 Academic Editor: Jialiang Yang Copyright © 2018 Long-Bai Wang et al. Tis is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Weisolated an infuenza strain named A/Swine/Fujian/F1/2010 (H1N2) from a pig suspected to be infected with swine fu. Te results of electron microscopy, hemagglutination (HA) assay, hemagglutination inhibition (HI) assay, and whole genome sequencing analysis suggest that it was a reassortant virus of swine (H1N1 subtype), human (H3N2 subtype), and avian infuenza viruses. To further study the genetic evolution of A/Swine/Fujian/F1/2010 (H1N2), we cloned its whole genome fragments using RT-PCR and performed phylogenetic analysis on the eight genes. As a result, the nucleotide sequences of HA, NA, PB1, PA, PB2, NP, M, and NS gene are similar to those of A/Swine/Shanghai/1/2007(H1N2) with identity of 98.9%, 98.9%, 99.0%, 98.6%, 99.0%, 98.9%, 99.3%, and 99.3%, respectively. -
Serological Methods in the Identification and Characterization of Viruses
CHAPTER 4 Serological Methods in the Identification and Characterization of Viruses M. H. V. Van Regenmortel Laboratoire de Virologie Institut de Biologie Mo!eculaire et Cellulaire 67000 Strasbourg, France 1. INTRODUCTION The purpose of this chapter is to present an integrated view of the various serological techniques that have been used in virology. The accent will be placed on the principles that govern each type of test and on the general applicability of the different serological techniques in all fields of virus research. In recent years, advances in serological tech niques have sometimes been applied in only one area of virology, although they could have been equally useful to workers studying other groups of viruses. No doubt this stems from the host-oriented approach that has guided the compartmentation of virology into separate fields of specialization. When it comes to serological properties, however, the similarities between animal, insect, bacterial, and plant viruses are paramount. The same immunochemical principles govern the in vitro serological reactions of all viral antigens, and much of general interest can be learned from the findings obtained with each particular group of viruses. An attempt will be made here to emphasize the general validity of specific experimental procedures. A number of recent reviews restricted to the serology of particular groups of viruses are available 183 H. Fraenkel-Conrat et al. (eds.), Comprehensive Virology © Plenum Press, New York 1981 184 Chapter 4 (Cowan, 1973; Schmidt and Lennette, 1973; Ball, 1974; Kurstak and Morisset, 1974; Burns and Allison, 1975; Mazzone and Tignor, 1976; Mayr et al., 1977; Tyrrell, 1978; Van Regenmortel, 1978; Cooper, 1979). -
Immunoprophylaxis of Influenza Using AAV Vector Delivery of Cross
Immunoprophylaxis of Influenza using AAV Vector Delivery of Cross-Subtype Neutralizing Single Domain Antibodies JOANNE MARIE M. DEL ROSARIO Thesis submitted for the degree of Doctor of Philosophy Infection and Immunity University College London 2020 To Chris, as fate would have it. To Teki, thank you for everything. 2 DECLARATION I, Joanne Marie M. Del Rosario, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. __________________________ 3 ABSTRACT Cross-subtype neutralizing single domain antibodies against influenza present new opportunities for immunoprophylaxis and pandemic preparedness. Their simple modular structure and single open reading frame format are highly amenable to gene therapy-mediated delivery. R1a-B6, an alpaca-derived single domain antibody (nanobody), that is capable of potent cross-subtype neutralization in vitro of H1N1, H5N1, H2N2, and H9N2 influenza viruses, through binding to a highly conserved epitope in the influenza hemagglutinin stem region, was previously described. To evaluate the potential of R1a-B6 for immunoprophylaxis via adeno-associated viral (AAV) vector delivery, it was reformatted as Fc fusions of mouse IgG1 (ADCC-) and IgG2a (ADCC+) isotypes. This is also to extend R1a-B6’s half-life and to assess the requirement for ADCC for efficacy of R1a-B6 in vitro and in vivo. It was found that reformatted R1a-B6 of either mouse IgG isotype retained its potent binding and neutralization activity against different Group I influenza A subtypes in vitro. The findings in this study also demonstrate that a single intramuscular injection in mice of AAV encoding R1a-B6-Fc was able to drive sustained high-level expression (0.5–1.1 mg/mL) of the nanobody-Fc in sera with no evidence of reduction for up to 6 months. -
Generation of Influenza a Viruses Entirely from Cloned Cdnas
Proc. Natl. Acad. Sci. USA Vol. 96, pp. 9345–9350, August 1999 Microbiology Generation of influenza A viruses entirely from cloned cDNAs GABRIELE NEUMANN*, TOKIKO WATANABE*†,HIROSHI ITO*, SHINJI WATANABE*†,HIDEO GOTO*, PENG GAO*, MARK HUGHES*, DANIEL R. PEREZ‡,RUBEN DONIS‡,ERICH HOFFMANN§,GERD HOBOM§, AND YOSHIHIRO KAWAOKA*¶ *Department of Pathobiological Sciences, School of Veterinary Medicine, University of Madison-Wisconsin, 2015 Linden Drive West, Madison, WI 53706; †Laboratory of Microbiology, Department of Disease Control, Graduate School of Veterinary Medicine, Hokkaido University, Sapporo 060-0818, Japan; ‡Department of Veterinary and Biomedical Sciences, University of Nebraska-Lincoln, P.O. Box 830905, Lincoln, NE 68583-0905; and §Institut fu¨r Mikro- und Molekularbiologie, Frankfurter Strasse 107, 35392 Giessen, Germany Communicated by Paul Ahlquist, University of Wisconsin, Madison, WI, May 27, 1999 (received for review March 23, 1999) ABSTRACT We describe a new reverse-genetics system ruses, which contain six (Thogotovirus), seven (influenza C that allows one to efficiently generate influenza A viruses virus), or eight (influenza A and B viruses) segments of entirely from cloned cDNAs. Human embryonic kidney cells negative-sense RNA, have been produced entirely from cloned (293T) were transfected with eight plasmids, each encoding a cDNAs. This lag in progress has been felt most acutely in viral RNA of the A͞WSN͞33 (H1N1) or A͞PR͞8͞34 (H1N1) efforts to control influenza virus infections. virus, flanked by the human RNA polymerase I promoter and Palese and colleagues (13) pioneered the reverse-genetics, the mouse RNA polymerase I terminator—together with plas- helper virus-dependent system for influenza A virus (Fig. 1A). mids encoding viral nucleoprotein and the PB2, PB1, and PA In their approach, a ribonucleoprotein (RNP) complex is viral polymerases. -
I M M U N O L O G Y Core Notes
II MM MM UU NN OO LL OO GG YY CCOORREE NNOOTTEESS MEDICAL IMMUNOLOGY 544 FALL 2011 Dr. George A. Gutman SCHOOL OF MEDICINE UNIVERSITY OF CALIFORNIA, IRVINE (Copyright) 2011 Regents of the University of California TABLE OF CONTENTS CHAPTER 1 INTRODUCTION...................................................................................... 3 CHAPTER 2 ANTIGEN/ANTIBODY INTERACTIONS ..............................................9 CHAPTER 3 ANTIBODY STRUCTURE I..................................................................17 CHAPTER 4 ANTIBODY STRUCTURE II.................................................................23 CHAPTER 5 COMPLEMENT...................................................................................... 33 CHAPTER 6 ANTIBODY GENETICS, ISOTYPES, ALLOTYPES, IDIOTYPES.....45 CHAPTER 7 CELLULAR BASIS OF ANTIBODY DIVERSITY: CLONAL SELECTION..................................................................53 CHAPTER 8 GENETIC BASIS OF ANTIBODY DIVERSITY...................................61 CHAPTER 9 IMMUNOGLOBULIN BIOSYNTHESIS ...............................................69 CHAPTER 10 BLOOD GROUPS: ABO AND Rh .........................................................77 CHAPTER 11 CELL-MEDIATED IMMUNITY AND MHC ........................................83 CHAPTER 12 CELL INTERACTIONS IN CELL MEDIATED IMMUNITY ..............91 CHAPTER 13 T-CELL/B-CELL COOPERATION IN HUMORAL IMMUNITY......105 CHAPTER 14 CELL SURFACE MARKERS OF T-CELLS, B-CELLS AND MACROPHAGES...............................................................111 -
Oligomerization of Bacterially Expressed H1N1 Recombinant
www.nature.com/scientificreports OPEN Oligomerization of bacterially expressed H1N1 recombinant hemagglutinin contributes to Received: 30 April 2018 Accepted: 13 July 2018 protection against viral challenge Published: xx xx xxxx Tess E. Kuenstling1, Anthony R. Sambol1,2, Steven H. Hinrichs1,2 & Marilynn A. Larson1 Vaccination is the most efective intervention to prevent infuenza and control the spread of the virus. Alternatives are needed to the traditional egg-based vaccine strategy for a more rapid response to new outbreaks. Two diferent hemagglutinin (HA) fragments (rHA11-326 and rHA153-269) derived from infuenza A virus subtype H1N1 were expressed in Escherichia coli and characterized by immunoblot, gel fltration, hemagglutination, and competitive binding assays. rHA11-326 included neutralizing epitopes and the trimerization domain, whereas rHA153-269 included only the head of HA with the neutralizing epitopes. Mice were immunized with rHA11-326 or rHA153-269, and sera were tested for the presence of neutralizing antibodies. Mice were then challenged with H1N1 and infection severity was monitored. rHA11-326 trimerized, whereas rHA153-269 was unable to form oligomers. Both rHA11-326 and rHA153-269 elicited the production of neutralizing antibodies, but only oligomerized rHA11-326 protected against live virus challenges in mice. This study demonstrated that bacterially expressed HA was capable of folding properly and eliciting the production of neutralizing antibodies, and that HA oligomerization contributed to protection against viral challenge. Therefore, prokaryotic-derived vaccine platforms can provide antigenic and structural requirements for viral protection, as well as allow for the rapid and cost-efective incorporation of multiple antigens for broader protection. Infuenza seasonal infections lead to approximately 36,000 deaths in the United States alone each year with an associated annual economic burden of $87.1 billion dollars1,2. -
Chapter 14, Pp
In: Advances in Chemistry Research. Volume 20 ISBN: 978-1-62948-275-0 Editor: James C. Taylor © 2014 Nova Science Publishers, Inc. No part of this digital document may be reproduced, stored in a retrieval system or transmitted commercially in any form or by any means. The publisher has taken reasonable care in the preparation of this digital document, but makes no expressed or implied warranty of any kind and assumes no responsibility for any errors or omissions. No liability is assumed for incidental or consequential damages in connection with or arising out of information contained herein. This digital document is sold with the clear understanding that the publisher is not engaged in rendering legal, medical or any other professional services. Chapter 3 COAGULATION, FLOCCULATION, AGGLUTINATION AND HEMAGLUTINATION: SIMILAR PROPERTIES? A. F. S. Santos1, L. A. Luz2, T. H. Napoleão2, P. M. G. Paiva2 and L. C. B. B. Coelho2, 1IBB-Institute for Biotechnology and Bioengineering, Centre of Biological Engineering, University of Minho, Campus de Gualtar, Braga, Portugal 2Departamento de Bioquímica, Centro de Ciências Biológicas, Avenida Professor Moraes Rego, Universidade Federal de Pernambuco, Recife, Brazil ABSTRACT Coagulation, flocculation and agglutination are terms that usually cause confusion. Coagulation is a process of making colloidal matter dispersed/suspended in a liquid to join in a coherent mass. Flocculation is a physical process of contact and adhesions wherein the aggregates form larger-size clusters called flocs being excluded from suspension. These processes have several remarkable applications such as water treatment. The agglutination phenomena can be defined as the linkage of particles or cells in a liquid resulting in formation of clumps. -
A Review on the Methods Used for the Detection and Diagnosis of Rabbit Hemorrhagic Disease Virus (RHDV)
microorganisms Review A Review on the Methods Used for the Detection and Diagnosis of Rabbit Hemorrhagic Disease Virus (RHDV) Joana Abrantes 1,2 and Ana M. Lopes 1,3,* 1 CIBIO/InBio-UP, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, 4485-661 Vairão, Portugal; [email protected] 2 Departamento de Biologia, Faculdade de Ciências da Universidade do Porto, 4169-007 Porto, Portugal 3 Instituto de Ciências Biomédicas Abel Salazar (ICBAS)/Unidade Multidisciplinar de Investigação Biomédica (UMIB), Universidade do Porto, 4050-313 Porto, Portugal * Correspondence: [email protected] Abstract: Since the early 1980s, the European rabbit (Oryctolagus cuniculus) has been threatened by the rabbit hemorrhagic disease (RHD). The disease is caused by a lagovirus of the family Caliciviridae, the rabbit hemorrhagic disease virus (RHDV). The need for detection, identification and further characterization of RHDV led to the development of several diagnostic tests. Owing to the lack of an appropriate cell culture system for in vitro propagation of the virus, much of the methods involved in these tests contributed to our current knowledge on RHD and RHDV and to the development of vaccines to contain the disease. Here, we provide a comprehensive review of the RHDV diagnostic tests used since the first RHD outbreak and that include molecular, histological and serological techniques, ranging from simpler tests initially used, such as the hemagglutination test, to the more recent and sophisticated high-throughput sequencing, along with an overview of their potential and their limitations. Citation: Abrantes, J.; Lopes, A.M. A Review on the Methods Used for the Keywords: rabbit hemorrhagic disease virus; detection; European rabbit Detection and Diagnosis of Rabbit Hemorrhagic Disease Virus (RHDV). -
Hemagglutination by Purified Type I Escherichia Coli Pili*
CORE Metadata, citation and similar papers at core.ac.uk Provided by PubMed Central HEMAGGLUTINATION BY PURIFIED TYPE I ESCHERICHIA COLI PILI* BY I. E. SALIT,$ AND E. C. GOTSCHLICH (From The Rockefeller University, New York 10021) Agglutination of erythrocytes by Escherichia coli (1), Shigella (2), Salmonella (3), and Klebsiella (4) has been known for many years. More recently, the gonococcus has been associated with hemagglutination (HA) 1 (5) and, by using purified pili, it has been conclusively demonstrated that these appendages are the hemagglutinin (6). For coliform bacteria, HA has in some instances been attributed to nonpili components of the bacterial cell (7), but in other studies, using whole organisms, pili have been implicated (2-4). HA presumed to be caused by pili is inhibited by low concentrations of mannose, but that related to nonpili components is unaffected by mannose. Pilated and nonpilated bacterial variants were used in these earlier HA studies, but this approach does not permit detailed analysis. Purified pili must be used to prove conclusively that mannose-sensitive HA is caused by pili and to investigate further the characteristics of such binding. An outline of a method for type I pili isolation has previously been reported (8), but there have been no subsequent studies on the adherence of purified type I pili to mammalian cells. We have modified Brinton's isolation procedure and have prepared large yields of type I pili from E. coli K12. These pili are pure by electron microscopy, gel electrophoresis, and isopycnic centrifugation, and they agglutinate erythrocytes from several species. HA is inhibited by anti-pili antibodies and saccharides related to D-mannose. -
Recent Advances in Two-Dimensional Transition Metal Dichalcogenide Nanocomposites Biosensors for Virus Detection Before and During COVID-19 Outbreak
Review Recent Advances in Two-Dimensional Transition Metal Dichalcogenide Nanocomposites Biosensors for Virus Detection before and during COVID-19 Outbreak Ching Ying Katherine Lam 1,† , Qin Zhang 1,†, Bohan Yin 1, Yingying Huang 1, Hui Wang 2, Mo Yang 1,* and Siu Hong Dexter Wong 1,* 1 Department of Biomedical Engineering, Hong Kong Polytechnic University, Hong Kong 999077, China; [email protected] (C.Y.K.L.); [email protected] (Q.Z.); [email protected] (B.Y.); [email protected] (Y.H.) 2 Fishery Resource and Environment Research Center, Chinese Academy of Fishery Sciences, Beijing 100141, China; [email protected] * Correspondence: [email protected] (M.Y.); [email protected] (S.H.D.W.); Tel.: +852-2766-4946 (M.Y.); +852-2766-7676 (S.H.D.W.) † These authors contributed equally to this work. Abstract: The deadly Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) outbreak has become one of the most challenging pandemics in the last century. Clinical diagnosis reports a high infection rate within a large population and a rapid mutation rate upon every individual infection. The polymerase chain reaction has been a powerful and gold standard molecular diagnostic technique over the past few decades and hence a promising tool to detect the SARS-CoV-2 nucleic Citation: Lam, C.Y.K.; Zhang, Q.; acid sequences. However, it can be costly and involved in complicated processes with a high demand Yin, B.; Huang, Y.; Wang, H.; Yang, for on-site tests. This pandemic emphasizes the critical need for designing cost-effective and fast M.; Wong, S.H.D.