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A General and Direct Reductive Amination of Aldehydes and Ketones with Electron-Deficient Anilines

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A General and Direct Reductive Amination of Aldehydes and Ketones with Electron-Deficient Anilines SYNTHESIS0039-78811437-210X © Georg Thieme Verlag Stuttgart · New York 2016, 48, 1301–1317 1301 feature Syn thesis J. Pletz et al. Feature A General and Direct Reductive Amination of Aldehydes and Ketones with Electron-Deficient Anilines Jakob Pletz EWG hydride reductant EWG H NH 1 N R1 Bernhard Berg 2 O R activating agent + Rolf Breinbauer* 2 R2 R Institute of Organic Chemistry, Graz University of Technology, 29 examples up to 99% yield Stremayrgasse 9, 8010 Graz, Austria 3 methods: [email protected] A) BH3•THF, AcOH, CH2Cl2, 0–20 °C 12 anilines In memoriam Philipp Köck B) BH3•THF, TMSCl, DMF, 0 °C 14 ketones C) NaBH4, TMSCl, DMF, 0 °C 3 aldehydes Received: 01.12.2015 Our first goal was the design and synthesis of analogues Accepted after revision: 20.01.2016 of intermediates in the transformation catalyzed by the Published online: 01.03.2016 1 DOI: 10.1055/s-0035-1561384; Art ID: ss-2015-t0688-fa protein PhzA/B. According to Wulf’s proposal, this enzyme was expected to catalyze the imine formation between the putative aminoketone B, resulting from the transformation Abstract In our ongoing efforts in preparing tool compounds for in- of PhzF with dihydrohydroxyanthranilic acid (DHHA; A), vestigating and controlling the biosynthesis of phenazines, we recog- with itself, thereby establishing the tricyclic skeleton C, nized the limitations of existing protocols for C–N bond formation of from which after a series of oxidation reactions phenazine- electron-deficient anilines when using reductive amination. After ex- carboxylic acid E will be formed (Scheme 1). In my group tensive optimization, we have established three robust and scalable protocols for the reductive amination of ketones with electron-deficient the project was pursued by two talented students: Almut anilines, by using either BH3·THF/AcOH/CH2Cl2 (method A), with reac- Graebsch synthesized in her diploma thesis the first li- tion times of several hours, or the more powerful combinations gands, which could be shown, by isothermal calorimetry BH3·THF/TMSCl/DMF (method B) and NaBH4/TMSCl/DMF (method C), which give full conversions for most substrates within 10 to 25 minutes. The scope and limitations of these reactions have been defined for 12 CO H anilines and 14 ketones. CO2H 2 O NH NH2 2 PhzF Key words amines, anilines, borane, hydride, reductive amination, ke- + H N tones, process chemistry, sodium borohydride OH O 2 H CO H A B 2 Introduction DHHA PhzA/B – 2 H2O In 2005 I saw at a conference in London a poster by the HO C PhzE 2 structural biologist and enzymologist Wulf Blankenfeldt, PhzD N who presented his progress on the investigation of the bio- synthesis of phenazines, a class of bacterial natural prod- N ucts among which the virulence factor pyocyanine is proba- chorismic acid C CO2H bly its most prominent member.1 He had already solved the structure of several enzymes along this biosynthetic path- PhzA/B way, but there were several open mechanistic questions, for which it would be important to have substrate analogues HO2C HO2C PhzG H binding to these proteins. These probes would ideally serve N N + O2 also as inhibitors of these enzymes, potentially allowing the – CO chemical control of the biosynthesis pathway – an attrac- 2 N N – H2O2 tive goal and formidable challenge for a synthetic organic CO H E D 2 chemist and the starting point of a fruitful collaboration be- tween our two groups. Scheme 1 Biosynthesis of phenazines © Georg Thieme Verlag Stuttgart · New York — Synthesis 2016, 48, 1301–1317 1302 Syn thesis J. Pletz et al. Feature (ITC) and X-ray crystallography of the protein ligand com- waste products of the Ullmann–Goldberg reaction led to ra- plex, to bind to PhzA/B. This work was continued by Matthias cemic G by bromination of the main product. When sub- Mentel, who, after the move of our laboratory to the Univer- jecting it to ITC and X-ray crystal structure analysis, we sity of Leipzig, used information gained from X-ray crystal- made the completely unexpected and stunning observation lography and ITC to design even more potent molecules, ul- that for racemic G both enantiomers were found in the timately leading to two important ligands, which we named binding pocket of PhzA/B simultaneously. We have carefully ‘Phenazistatin’ (F) and ‘Maverick’ (G) (Figure 1). Phenazista- investigated this case, which is the first example in which tin, which binds to PhzA/B with a Kd = 51 nM, is a strongly the textbook notion of eutomer vs. distomer behavior of ra- affine ligand, mimicking the intermediate after the first cemic drugs is not valid, since each enantiomer of Maverick imine formation catalyzed by PhzA/B. The X-ray crystal (G) binds more strongly to the protein than its racemate.3 structure of the protein-ligand complex of PhzA/B·F proved After the move of our laboratory to Graz, Jakob Pletz important for the unambiguous assignment of the biologi- continued the work of Matthias Mentel, and tried to pre- cal purpose and mechanistic details of PhzA/B function.2 pare even more affine ligands of PhzA/B and analogues of Compound G was isolated in 1% yield, as Matthias noticed it Maverick, exploring if other molecules would also exhibit as a minor byproduct in the Ullmann–Goldberg reaction of the amazing phenotype of simultaneous binding of racemic 2-bromobenzoic acid with 3-aminopiperidine, where Biographical sketches Jakob Pletz was born in Ober- Professor John K. Gallos at the logical characterization of ana- pullendorf (Austria) in 1987. He Aristotle University of Thessa- logues of amine-containing obtained his B.Sc. in chemistry loniki (Greece), he carried out natural products under the and his M.Sc. in technical chem- his Diploma thesis project un- guidance of Professor Rolf istry from the Graz University of der the guidance of Professor Breinbauer at the Graz Universi- Technology and the University Rolf Breinbauer. Since 2012 he ty of Technology (Austria). of Graz. After an Erasmus ex- has been working on his Ph.D. change stay in the laboratory of thesis on the synthesis and bio- Bernhard Berg was born in accomplishing his B.Sc. thesis Since 2015 he has been pursu- San Francisco (USA) in 1990. He under the supervision of Prof. ing his Master studies in techni- finished his primary education Rolf Breinbauer in early 2015. In cal chemistry at the Graz (elementary and high school) in the summer 2015 he worked in University of Technology Linz (Austria) and began study- the laboratory of Nancy I. Totah, (Austria). ing chemistry at the Graz Uni- in the Department of Chemistry versity of Technology in 2011, at Syracuse University (USA). Rolf Breinbauer was born in heim/Ruhr (Germany). After of Dortmund. From 2005 to Schärding (Austria) in 1970. He working as a postdoctoral re- 2007 he was a professor of or- studied chemistry at the Vienna searcher with an Erwin- ganic chemistry at the Universi- University of Technology and Schrödinger fellowship in the ty of Leipzig. Since 2007, he has the University of Heidelberg, laboratory of Professor Eric N. been a full professor of organic carrying out his Diploma thesis Jacobsen (Harvard University, chemistry at the Graz University project under the guidance of USA), he moved in 2000 to of Technology in Graz (Austria). Professor Günter Helmchen. Dortmund (Germany) as a His research interests encom- From 1995 to 1998, he worked group leader at the Max-Planck pass the design and synthesis of as a Ph.D. student under the Institute of Molecular Physiolo- tool compounds for chemical guidance of Professor Manfred gy (department head: Professor biology and the development of T. Reetz at the Max-Planck-Insti- Herbert Waldmann) and as a ju- new synthetic methods. tut für Kohlenforschung in Mül- nior professor at the University © Georg Thieme Verlag Stuttgart · New York — Synthesis 2016, 48, 1301–1317 1303 Syn thesis J. Pletz et al. Feature CO2H more available than the alicyclic amines necessary for the CO2H H H Ullmann–Goldberg route (Figure 2). The lack of control of N N the resulting stereogenic center should not bother us at this early stage of biological testing with PhzA/B, because we Br Br N H have learned from the studies with Maverick (G) that race- CO2H Phenazistatin Maverick mic ligands could offer interesting surprises with this par- F G ticular protein. First we had to develop more efficient pro- tocols for reductive aminations, as we soon noticed that all Figure 1 Structures of Phenazistatin (F) and Maverick (G) established protocols proved to be inefficient for our elec- tron-deficient aniline substrates. In this article we want to molecules in a single binding pocket. Jakob soon recognized report three methods, which proved to be very valuable for that a major limitation in his work was the inefficiency of this type of substrates. the Ullmann–Goldberg reaction for the C–N bond forma- tion.4 Despite considerable efforts and some success in im- Ullmann–Goldberg amination proving the yields for some substrates by optimizing the re- reductive EWG amination action conditions, no reliable protocol could be found H which was suitable for the diverse and highly functional- N ized substrates of our ligands. Jakob suggested a different 1 route in which the C–N bond is formed with the alkyl car- R 2 bon by using reductive amination as the strategic transfor- R mation, which should lead to higher yields and have the ad- Figure 2 Strategic disconnections for the synthesis of PhzA ligands ditional advantage that the required ketone substrates are Table 1 Screening of Reductive Amination Methods CO2Me CO2Me O H reductive N NH amination 2 + Br Br CN CN Entry Conditions Ref.
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