Shapes of Molecules, Hybrid Orbitals and Symmetry Descriptions
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Crystal Structures
Crystal Structures Academic Resource Center Crystallinity: Repeating or periodic array over large atomic distances. 3-D pattern in which each atom is bonded to its nearest neighbors Crystal structure: the manner in which atoms, ions, or molecules are spatially arranged. Unit cell: small repeating entity of the atomic structure. The basic building block of the crystal structure. It defines the entire crystal structure with the atom positions within. Lattice: 3D array of points coinciding with atom positions (center of spheres) Metallic Crystal Structures FCC (face centered cubic): Atoms are arranged at the corners and center of each cube face of the cell. FCC continued Close packed Plane: On each face of the cube Atoms are assumed to touch along face diagonals. 4 atoms in one unit cell. a 2R 2 BCC: Body Centered Cubic • Atoms are arranged at the corners of the cube with another atom at the cube center. BCC continued • Close Packed Plane cuts the unit cube in half diagonally • 2 atoms in one unit cell 4R a 3 Hexagonal Close Packed (HCP) • Cell of an HCP lattice is visualized as a top and bottom plane of 7 atoms, forming a regular hexagon around a central atom. In between these planes is a half- hexagon of 3 atoms. • There are two lattice parameters in HCP, a and c, representing the basal and height parameters Volume respectively. 6 atoms per unit cell Coordination number – the number of nearest neighbor atoms or ions surrounding an atom or ion. For FCC and HCP systems, the coordination number is 12. For BCC it’s 8. -
Crystal Structure of a Material Is Way in Which Atoms, Ions, Molecules Are Spatially Arranged in 3-D Space
Crystalline Structures – The Basics •Crystal structure of a material is way in which atoms, ions, molecules are spatially arranged in 3-D space. •Crystal structure = lattice (unit cell geometry) + basis (atom, ion, or molecule positions placed on lattice points within the unit cell). •A lattice is used in context when describing crystalline structures, means a 3-D array of points in space. Every lattice point must have identical surroundings. •Unit cell: smallest repetitive volume •Each crystal structure is built by stacking which contains the complete lattice unit cells and placing objects (motifs, pattern of a crystal. A unit cell is chosen basis) on the lattice points: to represent the highest level of geometric symmetry of the crystal structure. It’s the basic structural unit or building block of crystal structure. 7 crystal systems in 3-D 14 crystal lattices in 3-D a, b, and c are the lattice constants 1 a, b, g are the interaxial angles Metallic Crystal Structures (the simplest) •Recall, that a) coulombic attraction between delocalized valence electrons and positively charged cores is isotropic (non-directional), b) typically, only one element is present, so all atomic radii are the same, c) nearest neighbor distances tend to be small, and d) electron cloud shields cores from each other. •For these reasons, metallic bonding leads to close packed, dense crystal structures that maximize space filling and coordination number (number of nearest neighbors). •Most elemental metals crystallize in the FCC (face-centered cubic), BCC (body-centered cubic, or HCP (hexagonal close packed) structures: Room temperature crystal structure Crystal structure just before it melts 2 Recall: Simple Cubic (SC) Structure • Rare due to low packing density (only a-Po has this structure) • Close-packed directions are cube edges. -
Tetrahedral Coordination with Lone Pairs
TETRAHEDRAL COORDINATION WITH LONE PAIRS In the examples we have discussed so far, the shape of the molecule is defined by the coordination geometry; thus the carbon in methane is tetrahedrally coordinated, and there is a hydrogen at each corner of the tetrahedron, so the molecular shape is also tetrahedral. It is common practice to represent bonding patterns by "generic" formulas such as AX4, AX2E2, etc., in which "X" stands for bonding pairs and "E" denotes lone pairs. (This convention is known as the "AXE method") The bonding geometry will not be tetrahedral when the valence shell of the central atom contains nonbonding electrons, however. The reason is that the nonbonding electrons are also in orbitals that occupy space and repel the other orbitals. This means that in figuring the coordination number around the central atom, we must count both the bonded atoms and the nonbonding pairs. The water molecule: AX2E2 In the water molecule, the central atom is O, and the Lewis electron dot formula predicts that there will be two pairs of nonbonding electrons. The oxygen atom will therefore be tetrahedrally coordinated, meaning that it sits at the center of the tetrahedron as shown below. Two of the coordination positions are occupied by the shared electron-pairs that constitute the O–H bonds, and the other two by the non-bonding pairs. Thus although the oxygen atom is tetrahedrally coordinated, the bonding geometry (shape) of the H2O molecule is described as bent. There is an important difference between bonding and non-bonding electron orbitals. Because a nonbonding orbital has no atomic nucleus at its far end to draw the electron cloud toward it, the charge in such an orbital will be concentrated closer to the central atom. -
Symmetry and Tensors Rotations and Tensors
Symmetry and tensors Rotations and tensors A rotation of a 3-vector is accomplished by an orthogonal transformation. Represented as a matrix, A, we replace each vector, v, by a rotated vector, v0, given by multiplying by A, 0 v = Av In index notation, 0 X vm = Amnvn n Since a rotation must preserve lengths of vectors, we require 02 X 0 0 X 2 v = vmvm = vmvm = v m m Therefore, X X 0 0 vmvm = vmvm m m ! ! X X X = Amnvn Amkvk m n k ! X X = AmnAmk vnvk k;n m Since xn is arbitrary, this is true if and only if X AmnAmk = δnk m t which we can rewrite using the transpose, Amn = Anm, as X t AnmAmk = δnk m In matrix notation, this is t A A = I where I is the identity matrix. This is equivalent to At = A−1. Multi-index objects such as matrices, Mmn, or the Levi-Civita tensor, "ijk, have definite transformation properties under rotations. We call an object a (rotational) tensor if each index transforms in the same way as a vector. An object with no indices, that is, a function, does not transform at all and is called a scalar. 0 A matrix Mmn is a (second rank) tensor if and only if, when we rotate vectors v to v , its new components are given by 0 X Mmn = AmjAnkMjk jk This is what we expect if we imagine Mmn to be built out of vectors as Mmn = umvn, for example. In the same way, we see that the Levi-Civita tensor transforms as 0 X "ijk = AilAjmAkn"lmn lmn 1 Recall that "ijk, because it is totally antisymmetric, is completely determined by only one of its components, say, "123. -
Properties of the Single and Double D4d Groups and Their Isomorphisms with D8 and C8v Groups A
Properties of the single and double D4d groups and their isomorphisms with D8 and C8v groups A. Le Paillier-Malécot, L. Couture To cite this version: A. Le Paillier-Malécot, L. Couture. Properties of the single and double D4d groups and their isomorphisms with D8 and C8v groups. Journal de Physique, 1981, 42 (11), pp.1545-1552. 10.1051/jphys:0198100420110154500. jpa-00209347 HAL Id: jpa-00209347 https://hal.archives-ouvertes.fr/jpa-00209347 Submitted on 1 Jan 1981 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. J. Physique 42 (1981) 1545-1552 NOVEMBRE 1981, 1545 Classification Physics Abstracts 75.10D Properties of the single and double D4d groups and their isomorphisms with D8 and C8v groups A. Le Paillier-Malécot Laboratoire de Magnétisme et d’Optique des Solides, 1, place A.-Briand, 92190 Meudon Bellevue, France and Université de Paris-Sud XI, Centre d’Orsay, 91405 Orsay Cedex, France and L. Couture Laboratoire Aimé-Cotton (*), C.N.R.S., Campus d’Orsay, 91405 Orsay Cedex, France and Laboratoire d’Optique et de Spectroscopie Cristalline, Université Pierre-et-Marie-Curie, Paris VI, 75230 Paris Cedex 05, France (Reçu le 15 mai 1981, accepté le 9 juillet 1981) Résumé. -
Molecular Symmetry
Molecular Symmetry Symmetry helps us understand molecular structure, some chemical properties, and characteristics of physical properties (spectroscopy) – used with group theory to predict vibrational spectra for the identification of molecular shape, and as a tool for understanding electronic structure and bonding. Symmetrical : implies the species possesses a number of indistinguishable configurations. 1 Group Theory : mathematical treatment of symmetry. symmetry operation – an operation performed on an object which leaves it in a configuration that is indistinguishable from, and superimposable on, the original configuration. symmetry elements – the points, lines, or planes to which a symmetry operation is carried out. Element Operation Symbol Identity Identity E Symmetry plane Reflection in the plane σ Inversion center Inversion of a point x,y,z to -x,-y,-z i Proper axis Rotation by (360/n)° Cn 1. Rotation by (360/n)° Improper axis S 2. Reflection in plane perpendicular to rotation axis n Proper axes of rotation (C n) Rotation with respect to a line (axis of rotation). •Cn is a rotation of (360/n)°. •C2 = 180° rotation, C 3 = 120° rotation, C 4 = 90° rotation, C 5 = 72° rotation, C 6 = 60° rotation… •Each rotation brings you to an indistinguishable state from the original. However, rotation by 90° about the same axis does not give back the identical molecule. XeF 4 is square planar. Therefore H 2O does NOT possess It has four different C 2 axes. a C 4 symmetry axis. A C 4 axis out of the page is called the principle axis because it has the largest n . By convention, the principle axis is in the z-direction 2 3 Reflection through a planes of symmetry (mirror plane) If reflection of all parts of a molecule through a plane produced an indistinguishable configuration, the symmetry element is called a mirror plane or plane of symmetry . -
Oxide Crystal Structures: the Basics
Oxide crystal structures: The basics Ram Seshadri Materials Department and Department of Chemistry & Biochemistry Materials Research Laboratory, University of California, Santa Barbara CA 93106 USA [email protected] Originally created for the: ICMR mini-School at UCSB: Computational tools for functional oxide materials – An introduction for experimentalists This lecture 1. Brief description of oxide crystal structures (simple and complex) a. Ionic radii and Pauling’s rules b. Electrostatic valence c. Bond valence, and bond valence sums Why do certain combinations of atoms take on specific structures? My bookshelf H. D. Megaw O. Muller & R. Roy I. D. Brown B. G. Hyde & S. Andersson Software: ICSD + VESTA K. Momma and F. Izumi, VESTA 3 for three-dimensional visualization of crystal, volumetric and morphology data, J. Appl. Cryst. 44 (2011) 1272–1276. [doi:10.1107/S0021889811038970] Crystal structures of simple oxides [containing a single cation site] Crystal structures of simple oxides [containing a single cation site] N.B.: CoO is simple, Co3O4 is not. ZnCo2O4 is certainly not ! Co3O4 and ZnCo2O4 are complex oxides. Graphs of connectivity in crystals: Atoms are nodes and edges (the lines that connect nodes) indicate short (near-neighbor) distances. CO2: The molecular structure is O=C=O. The graph is: Each C connected to 2 O, each O connected to a 1 C OsO4: The structure comprises isolated tetrahedra (molecular). The graph is below: Each Os connected to 4 O and each O to 1 Os Crystal structures of simple oxides of monovalent ions: A2O Cu2O Linear coordination is unusual. Found usually in Cu+ and Ag+. -
History of Mathematics
Georgia Department of Education History of Mathematics K-12 Mathematics Introduction The Georgia Mathematics Curriculum focuses on actively engaging the students in the development of mathematical understanding by using manipulatives and a variety of representations, working independently and cooperatively to solve problems, estimating and computing efficiently, and conducting investigations and recording findings. There is a shift towards applying mathematical concepts and skills in the context of authentic problems and for the student to understand concepts rather than merely follow a sequence of procedures. In mathematics classrooms, students will learn to think critically in a mathematical way with an understanding that there are many different ways to a solution and sometimes more than one right answer in applied mathematics. Mathematics is the economy of information. The central idea of all mathematics is to discover how knowing some things well, via reasoning, permit students to know much else—without having to commit the information to memory as a separate fact. It is the reasoned, logical connections that make mathematics coherent. The implementation of the Georgia Standards of Excellence in Mathematics places a greater emphasis on sense making, problem solving, reasoning, representation, connections, and communication. History of Mathematics History of Mathematics is a one-semester elective course option for students who have completed AP Calculus or are taking AP Calculus concurrently. It traces the development of major branches of mathematics throughout history, specifically algebra, geometry, number theory, and methods of proofs, how that development was influenced by the needs of various cultures, and how the mathematics in turn influenced culture. The course extends the numbers and counting, algebra, geometry, and data analysis and probability strands from previous courses, and includes a new history strand. -
Inorganic Chemistry
Inorganic Chemistry Chemistry 120 Fall 2005 Prof. Seth Cohen Some Important Features of Metal Ions Electronic configuration • Oxidation State/Charge. •Size. • Coordination number. • Coordination geometry. • “Soft vs. Hard”. • Lability. • Electrochemistry. • Ligand environment. 1 Oxidation State/Charge • The oxidation state describes the charge on the metal center and number of valence electrons • Group - Oxidation Number = d electron count 3 4 5 6 7 8 9 10 11 12 Size • Size of the metal ions follows periodic trends. • Higher positive charge generally means a smaller ion. • Higher on the periodic table means a smaller ion. • Ions of the same charge decrease in radius going across a row, e.g. Ca2+>Mn2+>Zn2+. • Of course, ion size will effect coordination number. 2 Coordination Number • Coordination Number = the number of donor atoms bound to the metal center. • The coordination number may or may not be equal to the number of ligands bound to the metal. • Different metal ions, depending on oxidation state prefer different coordination numbers. • Ligand size and electronic structure can also effect coordination number. Common Coordination Numbers • Low coordination numbers (n =2,3) are fairly rare, in biological systems a few examples are Cu(I) metallochaperones and Hg(II) metalloregulatory proteins. • Four-coordinate is fairly common in complexes of Cu(I/II), Zn(II), Co(II), as well as in biologically less relevant metal ions such as Pd(II) and Pt(II). • Five-coordinate is also fairly common, particularly for Fe(II). • Six-coordinate is the most common and important coordination number for most transition metal ions. • Higher coordination numbers are found in some 2nd and 3rd row transition metals, larger alkali metals, and lanthanides and actinides. -
Chapter 1 – Symmetry of Molecules – P. 1
Chapter 1 – Symmetry of Molecules – p. 1 - 1. Symmetry of Molecules 1.1 Symmetry Elements · Symmetry operation: Operation that transforms a molecule to an equivalent position and orientation, i.e. after the operation every point of the molecule is coincident with an equivalent point. · Symmetry element: Geometrical entity (line, plane or point) which respect to which one or more symmetry operations can be carried out. In molecules there are only four types of symmetry elements or operations: · Mirror planes: reflection with respect to plane; notation: s · Center of inversion: inversion of all atom positions with respect to inversion center, notation i · Proper axis: Rotation by 2p/n with respect to the axis, notation Cn · Improper axis: Rotation by 2p/n with respect to the axis, followed by reflection with respect to plane, perpendicular to axis, notation Sn Formally, this classification can be further simplified by expressing the inversion i as an improper rotation S2 and the reflection s as an improper rotation S1. Thus, the only symmetry elements in molecules are Cn and Sn. Important: Successive execution of two symmetry operation corresponds to another symmetry operation of the molecule. In order to make this statement a general rule, we require one more symmetry operation, the identity E. (1.1: Symmetry elements in CH4, successive execution of symmetry operations) 1.2. Systematic classification by symmetry groups According to their inherent symmetry elements, molecules can be classified systematically in so called symmetry groups. We use the so-called Schönfliess notation to name the groups, Chapter 1 – Symmetry of Molecules – p. 2 - which is the usual notation for molecules. -
20. Geometry of the Circle (SC)
20. GEOMETRY OF THE CIRCLE PARTS OF THE CIRCLE Segments When we speak of a circle we may be referring to the plane figure itself or the boundary of the shape, called the circumference. In solving problems involving the circle, we must be familiar with several theorems. In order to understand these theorems, we review the names given to parts of a circle. Diameter and chord The region that is encompassed between an arc and a chord is called a segment. The region between the chord and the minor arc is called the minor segment. The region between the chord and the major arc is called the major segment. If the chord is a diameter, then both segments are equal and are called semi-circles. The straight line joining any two points on the circle is called a chord. Sectors A diameter is a chord that passes through the center of the circle. It is, therefore, the longest possible chord of a circle. In the diagram, O is the center of the circle, AB is a diameter and PQ is also a chord. Arcs The region that is enclosed by any two radii and an arc is called a sector. If the region is bounded by the two radii and a minor arc, then it is called the minor sector. www.faspassmaths.comIf the region is bounded by two radii and the major arc, it is called the major sector. An arc of a circle is the part of the circumference of the circle that is cut off by a chord. -
Fifty Years of the VSEPR Model R.J
Available online at www.sciencedirect.com Coordination Chemistry Reviews 252 (2008) 1315–1327 Review Fifty years of the VSEPR model R.J. Gillespie Department of Chemistry, McMaster University, Hamilton, Ont. L8S 4M1, Canada Received 26 April 2007; accepted 21 July 2007 Available online 27 July 2007 Contents 1. Introduction ........................................................................................................... 1315 2. The VSEPR model ..................................................................................................... 1316 3. Force constants and the VSEPR model ................................................................................... 1318 4. Linnett’s double quartet model .......................................................................................... 1318 5. Exceptions to the VSEPR model, ligand–ligand repulsion and the ligand close packing (LCP) model ........................... 1318 6. Analysis of the electron density.......................................................................................... 1321 7. Molecules of the transition metals ....................................................................................... 1325 8. Teaching the VSEPR model ............................................................................................. 1326 9. Summary and conclusions .............................................................................................. 1326 Acknowledgements ...................................................................................................