Symmetry in Chemistry
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Symmetry and Tensors Rotations and Tensors
Symmetry and tensors Rotations and tensors A rotation of a 3-vector is accomplished by an orthogonal transformation. Represented as a matrix, A, we replace each vector, v, by a rotated vector, v0, given by multiplying by A, 0 v = Av In index notation, 0 X vm = Amnvn n Since a rotation must preserve lengths of vectors, we require 02 X 0 0 X 2 v = vmvm = vmvm = v m m Therefore, X X 0 0 vmvm = vmvm m m ! ! X X X = Amnvn Amkvk m n k ! X X = AmnAmk vnvk k;n m Since xn is arbitrary, this is true if and only if X AmnAmk = δnk m t which we can rewrite using the transpose, Amn = Anm, as X t AnmAmk = δnk m In matrix notation, this is t A A = I where I is the identity matrix. This is equivalent to At = A−1. Multi-index objects such as matrices, Mmn, or the Levi-Civita tensor, "ijk, have definite transformation properties under rotations. We call an object a (rotational) tensor if each index transforms in the same way as a vector. An object with no indices, that is, a function, does not transform at all and is called a scalar. 0 A matrix Mmn is a (second rank) tensor if and only if, when we rotate vectors v to v , its new components are given by 0 X Mmn = AmjAnkMjk jk This is what we expect if we imagine Mmn to be built out of vectors as Mmn = umvn, for example. In the same way, we see that the Levi-Civita tensor transforms as 0 X "ijk = AilAjmAkn"lmn lmn 1 Recall that "ijk, because it is totally antisymmetric, is completely determined by only one of its components, say, "123. -
Molecular Symmetry, Super-Rotation, and Semi-Classical Motion –
Molecular symmetry, super-rotation, and semi-classical motion – New ideas for old problems Inaugural - Dissertation zur Erlangung des Doktorgrades der Mathematisch-Naturwissenschaftlichen Fakultät der Universität zu Köln vorgelegt von Hanno Schmiedt aus Köln Berichterstatter: Prof. Dr. Stephan Schlemmer Prof. Per Jensen, Ph.D. Tag der mündlichen Prüfung: 24. Januar 2017 Awesome molecules need awesome theories DR.SANDRA BRUENKEN, 2016 − Abstract Traditional molecular spectroscopy is used to characterize molecules by their structural and dynamical properties. Furthermore, modern experimental methods are capable of determining state-dependent chemical reaction rates. The understanding of both inter- and intra-molecular dynamics contributes exceptionally, for example, to the search for molecules in interstellar space, where observed spectra and reaction rates help in under- standing the various phases of stellar or planetary evolution. Customary theoretical models for molecular dynamics are based on a few fundamental assumptions like the commonly known ball-and-stick picture of molecular structure. In this work we discuss two examples of the limits of conventional molecular theory: Extremely floppy molecules where no equilibrium geometric structure is definable and molecules exhibiting highly excited rotational states, where the large angular momentum poses considerable challenges to quantum chemical calculations. In both cases, we develop new concepts based on fundamental symmetry considerations to overcome the respective limits of quantum chemistry. For extremely floppy molecules where numerous large-amplitude motions render a defini- tion of a fixed geometric structure impossible, we establish a fundamentally new zero-order description. The ‘super-rotor model’ is based on a five-dimensional rigid rotor treatment depending only on a single adjustable parameter. -
Properties of the Single and Double D4d Groups and Their Isomorphisms with D8 and C8v Groups A
Properties of the single and double D4d groups and their isomorphisms with D8 and C8v groups A. Le Paillier-Malécot, L. Couture To cite this version: A. Le Paillier-Malécot, L. Couture. Properties of the single and double D4d groups and their isomorphisms with D8 and C8v groups. Journal de Physique, 1981, 42 (11), pp.1545-1552. 10.1051/jphys:0198100420110154500. jpa-00209347 HAL Id: jpa-00209347 https://hal.archives-ouvertes.fr/jpa-00209347 Submitted on 1 Jan 1981 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. J. Physique 42 (1981) 1545-1552 NOVEMBRE 1981, 1545 Classification Physics Abstracts 75.10D Properties of the single and double D4d groups and their isomorphisms with D8 and C8v groups A. Le Paillier-Malécot Laboratoire de Magnétisme et d’Optique des Solides, 1, place A.-Briand, 92190 Meudon Bellevue, France and Université de Paris-Sud XI, Centre d’Orsay, 91405 Orsay Cedex, France and L. Couture Laboratoire Aimé-Cotton (*), C.N.R.S., Campus d’Orsay, 91405 Orsay Cedex, France and Laboratoire d’Optique et de Spectroscopie Cristalline, Université Pierre-et-Marie-Curie, Paris VI, 75230 Paris Cedex 05, France (Reçu le 15 mai 1981, accepté le 9 juillet 1981) Résumé. -
Molecular Symmetry
Molecular Symmetry Symmetry helps us understand molecular structure, some chemical properties, and characteristics of physical properties (spectroscopy) – used with group theory to predict vibrational spectra for the identification of molecular shape, and as a tool for understanding electronic structure and bonding. Symmetrical : implies the species possesses a number of indistinguishable configurations. 1 Group Theory : mathematical treatment of symmetry. symmetry operation – an operation performed on an object which leaves it in a configuration that is indistinguishable from, and superimposable on, the original configuration. symmetry elements – the points, lines, or planes to which a symmetry operation is carried out. Element Operation Symbol Identity Identity E Symmetry plane Reflection in the plane σ Inversion center Inversion of a point x,y,z to -x,-y,-z i Proper axis Rotation by (360/n)° Cn 1. Rotation by (360/n)° Improper axis S 2. Reflection in plane perpendicular to rotation axis n Proper axes of rotation (C n) Rotation with respect to a line (axis of rotation). •Cn is a rotation of (360/n)°. •C2 = 180° rotation, C 3 = 120° rotation, C 4 = 90° rotation, C 5 = 72° rotation, C 6 = 60° rotation… •Each rotation brings you to an indistinguishable state from the original. However, rotation by 90° about the same axis does not give back the identical molecule. XeF 4 is square planar. Therefore H 2O does NOT possess It has four different C 2 axes. a C 4 symmetry axis. A C 4 axis out of the page is called the principle axis because it has the largest n . By convention, the principle axis is in the z-direction 2 3 Reflection through a planes of symmetry (mirror plane) If reflection of all parts of a molecule through a plane produced an indistinguishable configuration, the symmetry element is called a mirror plane or plane of symmetry . -
Chapter 1 – Symmetry of Molecules – P. 1
Chapter 1 – Symmetry of Molecules – p. 1 - 1. Symmetry of Molecules 1.1 Symmetry Elements · Symmetry operation: Operation that transforms a molecule to an equivalent position and orientation, i.e. after the operation every point of the molecule is coincident with an equivalent point. · Symmetry element: Geometrical entity (line, plane or point) which respect to which one or more symmetry operations can be carried out. In molecules there are only four types of symmetry elements or operations: · Mirror planes: reflection with respect to plane; notation: s · Center of inversion: inversion of all atom positions with respect to inversion center, notation i · Proper axis: Rotation by 2p/n with respect to the axis, notation Cn · Improper axis: Rotation by 2p/n with respect to the axis, followed by reflection with respect to plane, perpendicular to axis, notation Sn Formally, this classification can be further simplified by expressing the inversion i as an improper rotation S2 and the reflection s as an improper rotation S1. Thus, the only symmetry elements in molecules are Cn and Sn. Important: Successive execution of two symmetry operation corresponds to another symmetry operation of the molecule. In order to make this statement a general rule, we require one more symmetry operation, the identity E. (1.1: Symmetry elements in CH4, successive execution of symmetry operations) 1.2. Systematic classification by symmetry groups According to their inherent symmetry elements, molecules can be classified systematically in so called symmetry groups. We use the so-called Schönfliess notation to name the groups, Chapter 1 – Symmetry of Molecules – p. 2 - which is the usual notation for molecules. -
Chapter 4 Symmetry and Chemical Bonding
Chapter 4 Symmetry and Chemical Bonding 4.1 Orbital Symmetries and Overlap 4.2 Valence Bond Theory and Hybrid Orbitals 4.3 Localized and Delocalized Molecular Orbitals 4.4 MXn Molecules with Pi-Bonding 4.5 Pi-Bonding in Aromatic Ring Systems 4.1 Orbital Symmetries and Overlap Bonded state can be represented by a Schrödinger wave equation of the general form H; hamiltonian operator Ψ; eigenfunction E; eigenvalue It is customary to construct approximate wave functions for the molecule from the atomic orbitals of the interacting atoms. By this approach, when two atomic orbitals overlap in such a way that their individual wave functions add constructively, the result is a buildup of electron density in the region around the two nuclei. 4.1 Orbital Symmetries and Overlap The association between the probability, P, of finding the electron at a point in space and the product of its wave function and its complex conjugate. It the probability of finding it over all points throughout space is unity. N; normalization constant 4.1 Orbital Symmetries and Overlap Slater overlap integral; the nature and effectiveness of their interactions S>0, bonding interaction, a reinforcement of the total wave function and a buildup of electron density around the two nuclei S<0, antibonding interaction, decrease of electron density in the region around the two nuclei S=0, nonbonding interaction, electron density is essentially the same as before 4.1 Orbital Symmetries and Overlap Ballon representations: these are rough representations of 90-99% of the probability distribution, which as the product of the wave function and its complex conjugate (or simply the square, if the function is real). -
Molecular Symmetry
Molecular Symmetry 1 I. WHAT IS SYMMETRY AND WHY IT IS IMPORTANT? Some object are ”more symmetrical” than others. A sphere is more symmetrical than a cube because it looks the same after rotation through any angle about the diameter. A cube looks the same only if it is rotated through certain angels about specific axes, such as 90o, 180o, or 270o about an axis passing through the centers of any of its opposite faces, or by 120o or 240o about an axis passing through any of the opposite corners. Here are also examples of different molecules which remain the same after certain symme- try operations: NH3, H2O, C6H6, CBrClF . In general, an action which leaves the object looking the same after a transformation is called a symmetry operation. Typical symme- try operations include rotations, reflections, and inversions. There is a corresponding symmetry element for each symmetry operation, which is the point, line, or plane with respect to which the symmetry operation is performed. For instance, a rotation is carried out around an axis, a reflection is carried out in a plane, while an inversion is carried our in a point. We shall see that we can classify molecules that possess the same set of symmetry ele- ments, and grouping together molecules that possess the same set of symmetry elements. This classification is very important, because it allows to make some general conclusions about molecular properties without calculation. Particularly, we will be able to decide if a molecule has a dipole moment, or not and to know in advance the degeneracy of molecular states. -
Rotation Matrix - Wikipedia, the Free Encyclopedia Page 1 of 22
Rotation matrix - Wikipedia, the free encyclopedia Page 1 of 22 Rotation matrix From Wikipedia, the free encyclopedia In linear algebra, a rotation matrix is a matrix that is used to perform a rotation in Euclidean space. For example the matrix rotates points in the xy -Cartesian plane counterclockwise through an angle θ about the origin of the Cartesian coordinate system. To perform the rotation, the position of each point must be represented by a column vector v, containing the coordinates of the point. A rotated vector is obtained by using the matrix multiplication Rv (see below for details). In two and three dimensions, rotation matrices are among the simplest algebraic descriptions of rotations, and are used extensively for computations in geometry, physics, and computer graphics. Though most applications involve rotations in two or three dimensions, rotation matrices can be defined for n-dimensional space. Rotation matrices are always square, with real entries. Algebraically, a rotation matrix in n-dimensions is a n × n special orthogonal matrix, i.e. an orthogonal matrix whose determinant is 1: . The set of all rotation matrices forms a group, known as the rotation group or the special orthogonal group. It is a subset of the orthogonal group, which includes reflections and consists of all orthogonal matrices with determinant 1 or -1, and of the special linear group, which includes all volume-preserving transformations and consists of matrices with determinant 1. Contents 1 Rotations in two dimensions 1.1 Non-standard orientation -
Langmuir Films of Anthracene Derivatives on Liquid Mercury II: Asymmetric Molecules
2580 J. Phys. Chem. C 2007, 111, 2580-2587 Langmuir Films of Anthracene Derivatives on Liquid Mercury II: Asymmetric Molecules L. Tamam Department of Physics, Bar-Ilan UniVersity, Ramat-Gan 52900, Israel H. Kraack Department of Physics, Bar-Ilan UniVersity, Ramat-Gan 52900, Israel E. Sloutskin Department of Physics, Bar-Ilan UniVersity, Ramat-Gan 52900, Israel B. M. Ocko Department of Physics, BrookhaVen National Laboratory, Upton, New York 11973 P. S. Pershan Department of Physics and DEAS, HarVard UniVersity, Cambridge, Massachusetts 02138 E. Ofer Department of Physics, Bar-Ilan UniVersity, Ramat-Gan 52900, Israel M. Deutsch* Department of Physics, Bar-Ilan UniVersity, Ramat-Gan 52900, Israel ReceiVed: June 23, 2006; In Final Form: NoVember 28, 2006 The structure and phase sequence of liquid-mercury-supported Langmuir films (LFs) of anthrone and anthralin were studied by surface tensiometry and surface-specific synchrotron X-ray diffraction. In the low-coverage phase the molecules are both side-lying, rather than the flat-lying orientation found for anthracene and anthraquinone. In the high-coverage phase, the molecules are either standing up (anthrone) or remain side- lying (anthralin) on the mercury surface. In contrast with the symmetric anthracene and anthraquinone, both high-coverage phases exhibit long-range in-plane order. The order is different for the two compounds. The structural details, the role of molecular symmetry, the oxygen side groups, and the asymmetry-induced dipole moments are discussed. I. Introduction The previous paper1 detailed the reasons for undertaking the present study, discussed the measurement methods, and pre- sented the results obtained for mercury-supported Langmuir films (LFs) of anthracene and anthraquinone molecules, the structure of which is symmetric relative to both the long and short axes of the molecules. -
A Short Math Guide
University of Alabama Department of Physics and Astronomy PH 125 / LeClair Spring 2009 A Short Math Guide Contents 1 Coordinate systems 2 1.1 2D systems . 2 1.2 3D systems . 3 1.3 Rotation of coordinate systems . 3 1.3.1 Two dimensions . 3 1.3.2 Three dimensions . 6 1.3.3 Proper and Improper Rotations: Handedness . 6 2 Vectors 7 2.1 What is a vector? . 7 2.2 Representing vectors . 8 2.3 Adding vectors . 10 2.4 Unit vectors . 12 2.5 Scalar multiplication . 14 2.6 Scalar products . 15 2.7 Scalar Products of Unit Vectors . 16 2.8 Vector products . 17 2.9 Polar and Axial Vectors . 21 2.10 How Vectors Transform under Rotation, Inversion, and Translation . 23 3 Vector Calculus 24 3.1 Derivatives of unit vectors in non-cartesian systems . 24 3.2 Line, surface, and volume elements in different coordinate systems. 24 3.3 Partial Derivatives . 26 3.3.1 Example . 28 3.3.2 Tangents to 3D curves . 30 3.3.3 Equality of second-order partial derivatives . 30 3.3.4 Anti-partial-derivatives . 31 3.3.5 Common Notations . 32 3.4 The Gradient . 33 3.4.1 Vector Functions . 35 1 3.5 Divergence . 36 3.6 Curl . 36 4 Miscellaneous: Solving systems of linear equations 36 1 Coordinate systems Note that we use the convention that the cartesian unit vectors are x^, y^, and ^z, rather than ^{, ^|, and k^, using the substitutions x^ = ^{, y^ = ^|, and ^z = k^. 1.1 2D systems In two dimensions, commonly use two types of coordinate systems: cartesian (x−y) and polar (r−θ). -
A Derivation of the 32 Crystallographic Point Groups Using Elementary
American Mineralogist, Volwne 61, pages 145-165, 1976 A derivationof the 32 crystallographicpoint groupsusing elementary group theory MoNrn B. Borsnu.Jn., nNn G. V. Gtsss Virginia PolytechnicInstitute and State Uniuersity Blacksburg,Virginia 2406I Abstract A rigorous derivation of the 32 crystallographic point groups is presented.The derivation is designed for scientistswho wish to gain an appreciation of the group theoretical derivation but who do not wish to master the large number of specializedtopics used in other rigorous group theoreticalderivations. Introduction have appealedto a number of interestingalgorithms basedon various geometricand heuristic arguments This paper has two objectives.The first is the very to obtain the 32 crystallographicpoint groups.In this specificgoal of giving a complete and rigorous deri- paper we present a rigorous derivation of the 32 vation of the 32 crystallographicpoint groups with crystallographicpoint groups that usesonly the most emphasisplaced on making this paper as self-con- elementarynotions of group theory while still taking tained as possible.The second is the more general advantageof the power of the theory of groups. objective of presenting several concepts of modern The derivation given here was inspired by the dis- mathematics and their applicability to the study of cussionsgiven in Klein (1884),Weber (1896),Zas- crystallography.Throughout the paper we have at- senhaus(1949), and Weyl (1952).The mathematical tempted to present as much of the mathematical the- approach usedin their discussionsis a blend of group ory as possible,without resortingto long digressions, theory and the theory of the equivalencerelation' so that the reader with only a modest amount of Each of these mathematical concepts is described mathematical knowledge will be able to appreciate herein and is used in the ways suggestedby these the derivation. -
Molecular Symmetry and Spectroscopy
Molecular Symmetry and Spectroscopy Molecular Symmetry and Spectroscopy: Astronomy 9701/Physics 9524 Lecturer: Prof. Martin Houde [email protected] http://www.astro.uwo.ca/~houde Location: PAB Chart Room (Room 213e). Lectures: Monday, Wednesday, and Friday, from 11:30 am to 12:30 pm Recommended text: Fundamentals of Molecular Symmetry, (Institute of Physics), by Philip R. Bunker and Per Jensen. Useful references: See the bibliography below. Contact information: Martin Houde Assistant Professor Department of Physics and Astronomy Room 208, Physics and Astronomy Building E-mail: [email protected] Phone: (519) 661-2111 x: 86711 (office) Fax: (519) 661-2033 I can be reached at my office, especially after class where I will do my best to reserve time to answer your questions. I can also be reached during the week through e-mail for simple inquiries, or to make an appointment. I will try to reply to e-mails within two working days of reception. Students should regularly check my website to find out about course material or announcements (at http://www.astro.uwo.ca/~houde/courses/astronomy610a.html). Evaluation: The students will mainly be evaluated trough a series of assignments and a final project at the end of the semester. Although I reserve the right to hold an exam at one point during the semester... In case that were to happen, students absent on an examination day may be allowed to take a make-up exam if they present a note from a medical doctor within a reasonable amount of time. Similar consideration may be given under other exceptional circumstances.