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Research Plant Geneticist, USDA-ARS Professor, Department
ROGER PHILIP WISE Research Plant Geneticist, USDA-ARS Professor, Department of Plant Pathology and Microbiology Iowa State University Ames, IA 50011-1020 Phone: (515) 294-9756 Fax: (515) 294-9420 E-mail: [email protected] ; [email protected] Web: http://wiselab.org/ ; http://barleygenome.org/ Database: http://plexdb.org/ ; http://www.hordeumtoolbox.org/ A. Professional Preparation Michigan State University Physiology B.S. (High Honor), 1972-1976 Michigan State University Genetics Ph.D., 1978-1983 University of Florida Mol Plant-Microbe Interact Postdoctoral, 1984-1986 Max-Planck-Institut, Köln Plant Molecular Biology Postdoctoral, 1987-1989 B. Appointments 2015 – present ST-00 Cat 1 Research Geneticist, USDA-ARS / Professor, ISU 2003-2014 GS-15 Cat 1 Research Geneticist, USDA-ARS / Professor, ISU 2000-2002 GS-14 Cat 1 Research Geneticist, USDA-ARS / Professor, ISU 1998-2000 GS-14 Cat 1 Research Geneticist, USDA-ARS / Associate Professor, ISU 1994-1998 GS-13 Cat 1 Research Geneticist, USDA-ARS / Associate Professor, ISU 1989-1993 GS-12 Cat 1 Research Geneticist, USDA-ARS / Assistant Professor, ISU Iowa State Interdepartmental Program Affiliations: 1990-present Interdepartmental Genetics 1999-present Interdepartmental Bioinformatics & Computational Biology Iowa State Plant Sciences Institute – Center Membership: 1999-present Center for Plant Responses to Environmental Stresses 1999-present Center for Plant Genomics 1999-present Center for Plant Transformation and Gene Expression C. PROFESSIONAL AFFILIATIONS American Association for the Advancement of Science American Phytopathological Society International Society for Molecular Plant-Microbe Interactions Genetics Society of America American Association of Plant Biologists D. HONORS AND AWARDS 2015: Elected Fellow of AAAS 2011: USDA Secretary's Honor Award: Helping America promote sustainable agricultural production and biotechnology exports as America works to increase food security. -
Involvement of DPP9 in Gene Fusions in Serous Ovarian Carcinoma
Smebye et al. BMC Cancer (2017) 17:642 DOI 10.1186/s12885-017-3625-6 RESEARCH ARTICLE Open Access Involvement of DPP9 in gene fusions in serous ovarian carcinoma Marianne Lislerud Smebye1,2, Antonio Agostini1,2, Bjarne Johannessen2,3, Jim Thorsen1,2, Ben Davidson4,5, Claes Göran Tropé6, Sverre Heim1,2,5, Rolf Inge Skotheim2,3 and Francesca Micci1,2* Abstract Background: A fusion gene is a hybrid gene consisting of parts from two previously independent genes. Chromosomal rearrangements leading to gene breakage are frequent in high-grade serous ovarian carcinomas and have been reported as a common mechanism for inactivating tumor suppressor genes. However, no fusion genes have been repeatedly reported to be recurrent driver events in ovarian carcinogenesis. We combined genomic and transcriptomic information to identify novel fusion gene candidates and aberrantly expressed genes in ovarian carcinomas. Methods: Examined were 19 previously karyotyped ovarian carcinomas (18 of the serous histotype and one undifferentiated). First, karyotypic aberrations were compared to fusion gene candidates identified by RNA sequencing (RNA-seq). In addition, we used exon-level gene expression microarrays as a screening tool to identify aberrantly expressed genes possibly involved in gene fusion events, and compared the findings to the RNA-seq data. Results: We found a DPP9-PPP6R3 fusion transcript in one tumor showing a matching genomic 11;19-translocation. Another tumor had a rearrangement of DPP9 with PLIN3. Both rearrangements were associated with diminished expression of the 3′ end of DPP9 corresponding to the breakpoints identified by RNA-seq. For the exon-level expression analysis, candidate fusion partner genes were ranked according to deviating expression compared to the median of the sample set. -
150 Years of Research at the United States Department of Agriculture
United States Department of Agriculture Agricultural Research Service 150 Years of Research at June 2013 the United States Department of Agriculture: Plant Introduction and Breeding I Cover photo: The stately building that once housed the U.S. Department of Agriculture in Washington, D.C., ca. 1890. (This photo is preserved in the USDA History Collection, Special Collections, National Agricultural Library.) II United States Department of Agriculture Agricultural Research Service 150 Years of Research at June 2013 the United States Department of Agriculture: Plant Introduction and Breeding R.J. Griesbach Griesbach is Deputy Assistant Administrator, Office of Technology Transfer, USDA, Agricultural Research Service, Beltsville, MD. i Abstract Griesbach, R.J. 2013. 150 Years of Research at the While supplies last, single copies of this publication United States Department of Agriculture: can be obtained at no cost from Robert J. Griesbach, Plant Introduction and Breeding. U.S. Department USDA-ARS, Office of Technology Transfer, 5601 of Agriculture, Agricultural Research Service, Sunnyside Avenue, Room 4-1159, Beltsville, MD Washington, DC. 20705; or by email at [email protected]. The U.S. Department of Agriculture celebrated its Copies of this publication may be purchased in various 150th anniversary in 2012. One of the primary formats (microfiche, photocopy, CD, print on demand) functions of the USDA when it was established in 1862 from the National Technical Information Service, 5285 was “to procure, propagate, and distribute among the people new Port Royal Road, Springfield, VA 22161, (800) 553- and valuable seeds and plants.” The U.S. Government first 6847, www.ntis.gov. became involved in new plant introductions in 1825 when President John Quincy Adams directed U.S. -
Barbara Mcclintock
Barbara McClintock Lee B. Kass and Paul Chomet Abstract Barbara McClintock, pioneering plant geneticist and winner of the Nobel Prize in Physiology or Medicine in 1983, is best known for her discovery of transposable genetic elements in corn. This chapter provides an overview of many of her key findings, some of which have been outlined and described elsewhere. We also provide a new look at McClintock’s early contributions, based on our readings of her primary publications and documents found in archives. We expect the reader will gain insight and appreciation for Barbara McClintock’s unique perspective, elegant experiments and unprecedented scientific achievements. 1 Introduction This chapter is focused on the scientific contributions of Barbara McClintock, pioneering plant geneticist and winner of the Nobel Prize in Physiology or Medicine in 1983 for her discovery of transposable genetic elements in corn. Her enlightening experiments and discoveries have been outlined and described in a number of papers and books, so it is not the aim of this report to detail each step in her scientific career and personal life but rather highlight many of her key findings, then refer the reader to the original reports and more detailed reviews. We hope the reader will gain insight and appreciation for Barbara McClintock’s unique perspective, elegant experiments and unprecedented scientific achievements. Barbara McClintock (1902–1992) was born in Hartford Connecticut and raised in Brooklyn, New York (Keller 1983). She received her undergraduate and graduate education at the New York State College of Agriculture at Cornell University. In 1923, McClintock was awarded the B.S. -
Rollins Adams Emerson (1873-1947) Horticulturist Pioneer Plant Geneticist Administrator Inspiring Student Adviser Rosalind Morris University of Nebraska-Lincoln
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Agronomy & Horticulture -- Faculty Publications Agronomy and Horticulture Department 1969 Rollins Adams Emerson (1873-1947) Horticulturist Pioneer Plant Geneticist Administrator Inspiring Student Adviser Rosalind Morris University of Nebraska-Lincoln Follow this and additional works at: http://digitalcommons.unl.edu/agronomyfacpub Part of the Agricultural Science Commons, Agriculture Commons, Agronomy and Crop Sciences Commons, Botany Commons, Horticulture Commons, Other Plant Sciences Commons, and the Plant Biology Commons Morris, Rosalind, "Rollins Adams Emerson (1873-1947) Horticulturist Pioneer Plant Geneticist Administrator Inspiring Student Adviser" (1969). Agronomy & Horticulture -- Faculty Publications. 901. http://digitalcommons.unl.edu/agronomyfacpub/901 This Article is brought to you for free and open access by the Agronomy and Horticulture Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Agronomy & Horticulture -- Faculty Publications by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. ROLLINS ADAMS EMERSON (1873-1947) HORTICULTURIST PIONEER PLANT GENETICIST ADMINISTRATOR INSPIRING STUDENT ADVISER This biography was prepared by Rosa I ind Morris Department of Agronomy, University of Nebraska Lincoln, Nebraska 68503 and was presented in part at the Annual Meeting of The Nebraska Academy of Sciences, 1969. An abstract of the talk was published in the Proceedings of The Academy for 1969. ROLLINS ADAMS EMERSON (1873-1947) HORTICULTURIST, PIONEER PLANT GENETICIST, ADMINISTRATOR, INSPIRING STUDENT ADVISER Rosallnd Morris, Department of Agronomy, University of Nebraska, Lincoln, Nebraska The vigorous and highly productive life of Professor R. A. Emerson spanned 74 years and 7 months. His birth and death took place In New York State, but Nebraska nurtured his early development and schooling. -
RF Annual Report
THE ROCKEFELLER FOUNDATION ANNUAL REPORT FOR 1966 JAN 26 ZD01 2003 The Rockefeller Foundation 31S-3 THE ROCKEFELLER FOUNDATION 111 WEST 50TH STREET, NEW YORK, NEW YORK 10020 PRINTED IN THE UNITED STATES OF AMERICA 2003 The Rockefeller Foundation CONTENTS Trustees, Officers, and Committees, 1966-1967 VIII Officers and Staff, 1966 X THE PRESIDENT'S REVIEW Technology and Nutrition 3 Agriculture as an Industry 4, The Technology of Nutrition 4, New Biological Materials 5, Progress through International Institutes 8, The Search for Quality 11 Toward the Conquest of Hunger 14 Wheat 15, Corn 17, Rice 20, Sorghum and the Millets 23, Potatoes 24, Animal Sciences 27, Nutrition—Protein Sources 29, Institutional Development 31, Schistosomiasis Control 33, Agricultural Economics 35 Problems of Population 38 Teaching and Research in Reproductive Biology and Family Planning 41, Teaching and Research in Demography 47, Training Programs for Professional Personnel 47, Hospital- based Family Planning Programs 49 University Development 52 The University of Ibadan 54, The University of Valle 56, The University of the Philippines 62, Bangkok, Thailand 63, The University of Khartoum 66, Santiago, Chile 68, The University of East Africa 71 Aiding Our Cultural Development 76 Symphonic Music 81, Contemporary Chamber Ensembles 85, Teacher Training and Performer Training 85, Theatre 87, Playwrights 91, Actors and Directors 91, Audience Develop- ment 92, Dance 95, Creative Writing 95, The Humanities and the New Technology 97 Toward Equal Opportunity for All 100 Student -
Mai Muudatuntuu Ti on Man Mini
MAIMUUDATUNTUU US009809854B2 TI ON MAN MINI (12 ) United States Patent ( 10 ) Patent No. : US 9 ,809 ,854 B2 Crow et al. (45 ) Date of Patent : Nov . 7 , 2017 Whitehead et al. (2005 ) Variation in tissue - specific gene expression ( 54 ) BIOMARKERS FOR DISEASE ACTIVITY among natural populations. Genome Biology, 6 :R13 . * AND CLINICAL MANIFESTATIONS Villanueva et al. ( 2011 ) Netting Neutrophils Induce Endothelial SYSTEMIC LUPUS ERYTHEMATOSUS Damage , Infiltrate Tissues, and Expose Immunostimulatory Mol ecules in Systemic Lupus Erythematosus . The Journal of Immunol @(71 ) Applicant: NEW YORK SOCIETY FOR THE ogy , 187 : 538 - 552 . * RUPTURED AND CRIPPLED Bijl et al. (2001 ) Fas expression on peripheral blood lymphocytes in MAINTAINING THE HOSPITAL , systemic lupus erythematosus ( SLE ) : relation to lymphocyte acti vation and disease activity . Lupus, 10 :866 - 872 . * New York , NY (US ) Crow et al . (2003 ) Microarray analysis of gene expression in lupus. Arthritis Research and Therapy , 5 :279 - 287 . * @(72 ) Inventors : Mary K . Crow , New York , NY (US ) ; Baechler et al . ( 2003 ) Interferon - inducible gene expression signa Mikhail Olferiev , Mount Kisco , NY ture in peripheral blood cells of patients with severe lupus . PNAS , (US ) 100 ( 5 ) : 2610 - 2615. * GeneCards database entry for IFIT3 ( obtained from < http : / /www . ( 73 ) Assignee : NEW YORK SOCIETY FOR THE genecards. org /cgi - bin / carddisp .pl ? gene = IFIT3 > on May 26 , 2016 , RUPTURED AND CRIPPLED 15 pages ) . * Navarra et al. (2011 ) Efficacy and safety of belimumab in patients MAINTAINING THE HOSPITAL with active systemic lupus erythematosus : a randomised , placebo FOR SPECIAL SURGERY , New controlled , phase 3 trial . The Lancet , 377 :721 - 731. * York , NY (US ) Abramson et al . ( 1983 ) Arthritis Rheum . -
Inferring Biological Networks from Genome-Wide Transcriptional And
INFERRING BIOLOGICAL NETWORKS FROM GENOME-WIDE TRANSCRIPTIONAL AND FITNESS DATA By WAZEER MOHAMMAD VARSALLY A thesis submitted to The University of Birmingham for the degree of Doctor of Philosophy College of Life and Environmental Sciences School of Biosciences The University of Birmingham July 2013 I University of Birmingham Research Archive e-theses repository This unpublished thesis/dissertation is copyright of the author and/or third parties. The intellectual property rights of the author or third parties in respect of this work are as defined by The Copyright Designs and Patents Act 1988 or as modified by any successor legislation. Any use made of information contained in this thesis/dissertation must be in accordance with that legislation and must be properly acknowledged. Further distribution or reproduction in any format is prohibited without the permission of the copyright holder. ABSTRACT In the last 15 years, the increased use of high throughput biology techniques such as genome-wide gene expression profiling, fitness profiling and protein interactomics has led to the generation of an extraordinary amount of data. The abundance of such diverse data has proven to be an essential foundation for understanding the complexities of molecular mechanisms and underlying pathways within a biological system. One approach of extrapolating biological information from this wealth of data has been through the use of reverse engineering methods to infer biological networks. This thesis demonstrates the capabilities and applications of such methodologies in identifying functionally enriched network modules in the yeast species Saccharomyces cerevisiae and Schizosaccharomyces pombe. This study marks the first time a mutual information based network inference approach has been applied to a set of specific genome-wide expression and fitness compendia, as well as the integration of these multi- level compendia. -
William Friedman, Geneticist Turned Cryptographer
HIGHLIGHTED ARTICLE | PERSPECTIVES William Friedman, Geneticist Turned Cryptographer Irwin L. Goldman1 Department of Horticulture, University of Wisconsin–Madison, Wisconsin 53706 ABSTRACT William Friedman (1891–1969), trained as a plant geneticist at Cornell University, was employed at Riverbank Laboratories by the eccentric millionaire George Fabyan to work on wheat breeding. Friedman, however, soon became intrigued by and started working on a pet project of Fabyan’s involving the conjecture that Francis Bacon, a polymath known for the study of ciphers, was the real author of Shakespeare’s plays. Thus, beginning in 1916, Friedman turned his attention to the so called “Baconian cipher,” and developed decryption techniques that bore similarity to approaches for solving problems in population genetics. His most significant, indeed pathbreaking, work used ideas from genetics and statistics, focusing on analysis of the frequencies of letters in language use. Although he had transitioned from being a geneticist to a cryptographer, his earlier work had resonance in his later pursuits. He soon began working directly for the United States government and produced solutions used to solve complex military ciphers, in particular to break the Japanese Purple code during World War II. Another important legacy of his work was the establishment of the Signal Intelligence Service and eventually the National Security Agency. KEYWORDS cryptogram; cryptanalysis; Baconian cipher; Riverbank Laboratory code is a rule that governs how one piece of information of a gene. Thus, codes and coding have long been a part of Ais converted into a different representation of that in- understanding modern genetics and may be an important formation. Both language and writing are elegant examples part of the allure of this field of science. -
The Science of Crossing and Crops How Modern Science Is Helping Produce More Food in a a Teaching Unit Changing Climate for Year 11 Science Students
THE SCIENCE OF CROSSING AND CROPS HOW MODERN SCIENCE IS HELPING PRODUCE MORE FOOD IN A A TEACHING UNIT CHANGING CLIMATE FOR YEAR 11 SCIENCE STUDENTS THE SCIENCE OF CROSSING AND CROPS 1 About the GRDC The GRDC GRDC Values The Grains Research and Development Corporation is a • We are committed and passionate about the Australian statutory authority established to plan and invest in research, grains industry. development and extension (RD&E) for the Australian grains • We value creativity and innovation. industry. • We build strong relationships and partnerships based on Its primary objective is to drive the discovery, development mutual trust and respect. and delivery of world-class innovation to enhance the productivity, profitability and sustainability of Australian grain • We act ethically and with integrity. growers and benefit the industry and the wider community. • We are transparent and accountable to our stakeholders. Its primary business activity is the allocation and management of investment in grains RD&E. Contact TELEPHONE: 02 6166 4500 GRDC Vision FACSIMILE: 02 6166 4599 A profitable and sustainable Australian grains industry, valued EMAIL: [email protected] by the wider community. INTERNET: www.grdc.com.au GRDC Mission Create value by driving the discovery, development and delivery of world-class innovation in the Australian grains industry. Title: The science of crossing and crops – How modern science is helping produce more food in a changing climate Project Code: AGC00001 Authors: AgCommunicators JUNE 2016 ©Grains Research and Development Corporation 2016 All Rights Reserved This publication is copyright. Except as permitted under the Australian Copyright Act 1968 (Commonwealth) and subsequent amendments, no part of this publication may be reproduced, stored or transmitted in any form or by any means, electronic or otherwise, without the specific permission of the copyright owner. -
Agrohort Newsletter04.Pdf
GROWING PEOPLE FIRST AN ANNUAL PUBLICATION OF THE DEPARTMENT OF AGRONOMY AND HORTICULTURE Department of Agronomy and Horticulture Mission Statement ur mission is to advance the knowledge, theory, and application of plant and soil science and landscape design to improve the quality of life for citizens of ONebraska and the world. Our mission is accomplished through: commitment to undergraduate and graduate education; An effective balance between basic and applied research on topics with the greatest potential for impact in the plant and soil sciences; A Outreach education programs that facilitate adoption of new technologies and landscape design to meet the needs of stakeholder groups and Nebraska citizens. Photos by Brett Hampton/Gary Goodding, IANR/graphic arrangement by Carola Strauss Carola by arrangement IANR/graphic Goodding, Hampton/Gary Brett by Photos S U M M E R g 2 0 0 4 CONTENTS Alumni News . 10 Articles: Agronomy grad now dean at Purdue . 15 Alumni Association undergoes structural change . 24 Corn from the computer . 13 Finding a genetic key . 6 Legumes boost quality in bromegrass pastures . 12 New landscape design lab . 15 Probing ways to increase carbon storage in soil . 20 Successful UNL soil judging team . 25 Survey gives department a clearer mission . 16 Turf stars at Super Bowl. 9 Turning corn to ethanol . 14 WeedSOFT program helps farmers get tough . 8 Clubs: Agronomy . 24 Graduate Student Association(AHGSA) . 21 Horticulture . 23 Range Management . 18 Weed Science Students . 17 Deaths . 10, 21, 22 Department Head Message . 4 Faculty: Awards . 26 Promotions . 25 Fellowships . 28 Funds (Agronomy/Horticulture): Contribution form . 31 Descriptions . -
Biographical Memoir by STEVEN D
NATIONAL ACADEMY OF SCIENCES CHARLES MADERA RICK 1915–2002 A Biographical Memoir by STEVEN D. TANKSLEY AND GURDEV S. KHUSH Any opinions expressed in this memoir are those of the authors and do not necessarily reflect the views of the National Academy of Sciences. Biographical Memoirs, VOLUME 84 PUBLISHED 2003 BY THE NATIONAL ACADEMIES PRESS WASHINGTON, D.C. CHARLES MADERA RICK April 30, 1915–May 5, 2002 BY STEVEN D. TANKSLEY AND GURDEV S. KHUSH O CALL CHARLES M. RICK the father of tomato genetics T would not be an exaggeration. In the 1940s Rick began a series of studies that transformed tomato from a mere garden vegetable to a model organism. He was adept with the tools of reductionism (e.g., cytology, mutagenesis, bio- chemical genetics), yet he never succumbed to the reductionist’s view of life. Rather, he synthesized all his observations and research into an integrated view of to- mato biology, evolution, and biodiversity. Using this com- prehensive approach he developed the biology not only of cultivated tomato but also the entire tomato genus, Lycopersicon. He was a naturalist and adventurer, once aptly described as Charles Darwin and Indiana Jones rolled into one. Rick traveled extensively throughout the Andean re- gion of western South America collecting the wild relatives of tomato. The result was the development of an invaluable germplasm collection now housed at the C. M. Rick Genet- ics Resource Center at the University of California at Davis. This collection has become the cornerstone of tomato breed- ing and genetics and is the source of most of the major disease resistance genes that now characterize modern to- mato cultivars.