Sexually Transmitted Bacterial Pathogen for Which There Are Increasing Antimicrobial Resistance Concerns
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“Isolation of Antibiotic Producing Actinomycetes from Soil”
© 2020 JETIR May 2020, Volume 7, Issue 5 www.jetir.org (ISSN-2349-5162) “ISOLATION OF ANTIBIOTIC PRODUCING ACTINOMYCETES FROM SOIL” *Sneha khadse1Priyanka Titirmare2 1) Project assistant at CSIR NEERI Nagpur, 2) Kamla Nehru Mahavidyalaya, Nagpur. ABSTRACT The present study deals with the isolation, production, purification and optimization of antibiotics from soil. The soil samples were collected from various places. Actinomycetes strains were isolated in specific medium using starch casein agar medium. The actinomycetes were screened with regard to potential against gram positive and gram negative bacteria. The purified actinomycetes strains were performed in biochemical tests. Gram staining, sugars fermentation, HS production, urease production, MR-VP test, indole production, citrate 2 utilization. Fermentation was carried out with starch casein broth and identified strain of actinomyces as inoculums. Antimicrobial activity of antibiotics was detected on Mueller Hinton Agar Media against E.coli. The purification of antibiotics was done with the help of activated charcoal. During the experiment a modified fermentation medium was formulated and activity of antibiotic produced in this medium was detected against E.coli. The isolated bacteria such as actinomycetesobtained from the soil. INTRODUCTION Antibiotics are complex chemical secondary metabolites, which are produced by microorganisms & act against other microorganisms. The term antibiotics had its origin from Greek word anti-against+biotikos =”fit for life”. Antibiotics are the best known products of actinomycetes. The best known genus of actinomycetes; Streptomyces (Order Actinomycetales, family Streptomycetaceae are gram-positive, filamentous bacteria that are ubiquitous in soil and produce the majority (>70%) of known antibiotics (Tanaka and Omura, 1990). The isolation & characterization of Actinomycetes were performed in different biochemical methods. -
Biochemical Media Casitone Broth-White Cap with Black Circle. Loop Transfer
Biochemical Media Casitone Broth-white cap with black circle. Loop transfer. (Use care tops may be very loose) (Do not put caps on the wrong tubes during the inoculation procedures). Can the organism split tryptophan into indole, pyruvic acid and ammonia? Test for the presence of indole (unique to this process) by adding 5 drops of Kovacs Test Reagent. If indole is present, a ruby red color will form at the top of the test tube. The media name for casitone comes from the word casein. Casein is a milk protein rich in the amino acid tryptophan. Result sheet recorded with a “pos” or “neg” Phenol Red Carbohydrate Fermentation Broths (Phenol Reds) Red capped broth with durham tube-Phenol Red with Lactose Clear capped broth with durham tube-Phenol Red with Glucose Yellow capped broth with durham tube-Phenol Red with Sucrose Blue capped broth with durham tube-Phenol Red with Maltose Green capped broth with durham tube-Phenol Red with Mannitol All tubes are inoculated with loop transfers. Can the organism ferment the carbohydrates listed above? Each comes with a separate sugar, a durham tube for gas collection and the acid-base indicator called phenolphthalein. Fermentation will produce acidity and sometimes gas. Gas alone is not produced by the fermentation process. Phenolphthalein will turn yellow in the presence of acid, red in an alkaline environment. Gas production can be observed by the presence of air bubbles captured in the durham tube. For each result both an acid and gas response should be indicated. For a large amount of acid (yellow) use “A”. -
Insights Into the Pathogenicity of Burkholderia Pseudomallei
REVIEWS Melioidosis: insights into the pathogenicity of Burkholderia pseudomallei W. Joost Wiersinga*, Tom van der Poll*, Nicholas J. White‡§, Nicholas P. Day‡§ and Sharon J. Peacock‡§ Abstract | Burkholderia pseudomallei is a potential bioterror agent and the causative agent of melioidosis, a severe disease that is endemic in areas of Southeast Asia and Northern Australia. Infection is often associated with bacterial dissemination to distant sites, and there are many possible disease manifestations, with melioidosis septic shock being the most severe. Eradication of the organism following infection is difficult, with a slow fever-clearance time, the need for prolonged antibiotic therapy and a high rate of relapse if therapy is not completed. Mortality from melioidosis septic shock remains high despite appropriate antimicrobial therapy. Prevention of disease and a reduction in mortality and the rate of relapse are priority areas for future research efforts. Studying how the disease is acquired and the host–pathogen interactions involved will underpin these efforts; this review presents an overview of current knowledge in these areas, highlighting key topics for evaluation. Melioidosis is a serious disease caused by the aerobic, rifamycins, colistin and aminoglycosides), but is usually Gram-negative soil-dwelling bacillus Burkholderia pseu- susceptible to amoxicillin-clavulanate, chloramphenicol, domallei and is most common in Southeast Asia and doxycycline, trimethoprim-sulphamethoxazole, ureido- Northern Australia. Melioidosis is responsible for 20% of penicillins, ceftazidime and carbapenems2,4. Treatment all community-acquired septicaemias and 40% of sepsis- is required for 20 weeks and is divided into intravenous related mortality in northeast Thailand. Reported cases are and oral phases2,4. Initial intravenous therapy is given likely to represent ‘the tip of the iceberg’1,2, as confirmation for 10–14 days; ceftazidime or a carbapenem are the of disease depends on bacterial isolation, a technique that drugs of choice. -
Sexually Transmitted Diseases Act)
Europe’s journal on infectious disease epidemiology, prevention and control © Science Photo Special edition: Sexually transmitted infections August 2012 • Reports highlighting increasing trends of gonorrhoea and syphilis and the threat of drug-resistant gonorrhoea in Europe. www.eurosurveillance.org Editorial team Editorial advisors Based at the European Centre for Albania: Alban Ylli, Tirana Disease Prevention and Control (ECDC), Austria: Reinhild Strauss, Vienna 171 83 Stockholm, Sweden Belgium: Koen De Schrijver, Antwerp Telephone number Belgium: Sophie Quoilin, Brussels +46 (0)8 58 60 11 38 or +46 (0)8 58 60 11 36 Bosnia and Herzogovina: Nina Rodić Vukmir, Banja Luka Fax number Bulgaria: Mira Kojouharova, Sofia +46 (0)8 58 60 12 94 Croatia: TBC, Zagreb Cyprus: Chrystalla Hadjianastassiou, Nicosia E-mail Czech Republic: Bohumir Križ, Prague [email protected] Denmark: Peter Henrik Andersen, Copenhagen Editor-in-chief England and Wales: TBC, London Ines Steffens Estonia: Kuulo Kutsar, Tallinn Finland: Outi Lyytikäinen, Helsinki Scientific editors France: Judith Benrekassa, Paris Kathrin Hagmaier Germany: Jamela Seedat, Berlin Williamina Wilson Greece: Rengina Vorou, Athens Karen Wilson Hungary: Ágnes Csohán, Budapest Assistant editors Iceland: Haraldur Briem, Reykjavik Alina Buzdugan Ireland: Lelia Thornton, Dublin Ingela Söderlund Italy: Paola De Castro, Rome Associate editors Kosovo (under UNSCR 1244/99): Lul Raka, Pristina Andrea Ammon, Stockholm, Sweden Latvia: Jurijs Perevoščikovs, Riga Tommi Asikainen, Frankfurt, Germany -
Canada 57-2 Fisheries Peches L+I and Oceans Et Oceans STANDARD PROCEDURES PROCEDURES POUR for BACTERIOLOGICAL ANALYSES ANALYSIS BACTERIOLOGIQUES
/0.58:29 Fisheries Peches l+I and Oceans et Oceans Inspection Services de Services )'inspection Standard Procedures pour Procedures for analyses Bacteriological bacteriologiques Analysis ( /v/fJ,rJ Ul.LS IX 54.3 Canada 57-2 Fisheries Peches l+I and Oceans et Oceans STANDARD PROCEDURES PROCEDURES POUR FOR BACTERIOLOGICAL ANALYSES ANALYSIS BACTERIOLOGIQUES Record of Amendments amend. no chapter date of amend. inserted by insertion date 1 5 +Qn1"' E 31 - ns- X'S C? c l~ Le.Lle.J/ gs - Dtc C; ··7 ~ />f» c ~ e:. ~.J J-~ \ s .. o sfft8 /vf:-l~ fb. ~-o 1~1r . Government Gouvernement of Canada du Canada IDate ••• Canadian Food Agence canadienne 1 15£05£98 Inspection Agency d'inspection des aliments STANDARD PROCEDURES PROCEDURES POUR FOR BACTERIOLOGICAL ANALYSES ANALYSIS BACTERIOLOGIQUES Bulletin TO: All Holders of the Standard Procedures for Bacteriological Analysis Manual SUBJECT: MODIFICATIONS TO THE PROCEDURES Attached are modifications to various Chapters and Appendices of the Bacteriological Analysis manual. The changes have been incorporated in this bulletin format in order to provide the updates to manual holders as quickly as possible and also due to the uncertainty as to whether the manual will continue to be used as a bacteriological procedures reference by the Agency. The changes to the respective sections have been incorporated on separate pages so the pertinent page(s) may be inserted with the relevant chapter/appendix. If required, these modifications will be incorporated in the manual at a later date. Cam Prince Director Fish, -
Characterization of the Burkholderia Cenocepacia J2315 Surface-Exposed Immunoproteome
Article Characterization of the Burkholderia cenocepacia J2315 Surface-Exposed Immunoproteome 1, 1, 1, Sílvia A. Sousa * , António M.M. Seixas y , Manoj Mandal y, Manuel J. Rodríguez-Ortega 2 and Jorge H. Leitão 1,* 1 iBB–Institute for Bioengineering and Biosciences, 1049-001 Lisbon, Portugal; [email protected] (A.M.M.S.); [email protected] (M.M.) 2 Departament of Biochemistry and Molecular Biology, Córdoba University, 14071 Córdoba, Spain; [email protected] * Correspondence: [email protected] (S.A.S.); [email protected] (J.H.L.); Tel.: +351-2184-19986 (S.A.S.); +351-2184-17688 (J.H.L.) Both authors contributed equally to the work. y Received: 31 July 2020; Accepted: 3 September 2020; Published: 6 September 2020 Abstract: Infections by the Burkholderia cepacia complex (Bcc) remain seriously life threatening to cystic fibrosis (CF) patients, and no effective eradication is available. A vaccine to protect patients against Bcc infections is a highly attractive therapeutic option, but none is available. A strategy combining the bioinformatics identification of putative surface-exposed proteins with an experimental approach encompassing the “shaving” of surface-exposed proteins with trypsin followed by peptide identification by liquid chromatography and mass spectrometry is here reported. The methodology allowed the bioinformatics identification of 263 potentially surface-exposed proteins, 16 of them also experimentally identified by the “shaving” approach. Of the proteins identified, 143 have a high probability of containing B-cell epitopes that are surface-exposed. The immunogenicity of three of these proteins was demonstrated using serum samples from Bcc-infected CF patients and Western blotting, validating the usefulness of this methodology in identifying potentially immunogenic surface-exposed proteins that might be used for the development of Bcc-protective vaccines. -
Analysis of Shigella Flexneri Cell Surface Virulence Factors
Analysis of Shigella flexneri Cell Surface Virulence Factors Min Yan Teh B. Sc. (Honours) Submitted for the degree of Doctor of Philosophy Discipline of Microbiology and Immunology The School of Molecular and Biomedical Science The University of Adelaide September 2012 Declaration This work contains no material which has been accepted for the award of any other degree or diploma in any university or other tertiary institution to Min Yan Teh and, to the best of my knowledge and belief, contains no material previously published or written by another person, except where due reference has been made in the text. I give consent to this copy of my thesis, when deposited in the University Library, being made available for loan and photocopying, subject to the provisions of the Copyright Act 1968. The author acknowledges that copyright of published works contained within this thesis resides with the copyright holder(s) of those works. I also give permission for the digital version of my thesis to be made available on the web, via the University’s digital research repository, the Library catalogue, the Australasian Digital Theses Program (ADTP) and also through web search engines, unless permission has been granted by the University to restrict access for a period of time. Adelaide, Australia, September 2012 ___________________ Min Yan Teh i ii Abstract The IcsA autotransporter (AT) is a key virulence protein of Shigella flexneri, a human pathogen that causes bacillary dysentery through invasion of colonic epithelium. IcsA is a polarly distributed, outer membrane protein that confers motility to intracellular bacteria by engaging the host actin regulatory protein, neural Wiskott-Aldrich syndrome protein (N- WASP). -
Laboratory Methods for the Diagnosis of Epidemic Dysentery and Cholera Centers for Disease Control and Prevention Atlanta, Georgia 1999 WHO/CDS/CSR/EDC/99.8
WHO/CDS/CSR/EDC/99.8 Laboratory Methods for the Diagnosis of Epidemic Dysentery and Cholera Centers for Disease Control and Prevention Atlanta, Georgia 1999 WHO/CDS/CSR/EDC/99.8 Laboratory Methods for the Diagnosis of Epidemic Dysentery and Cholera Centers for Disease Control and Prevention Atlanta, Georgia 1999 This manual was prepared by the National Center for Infectious Diseases (NCID), Centers for Disease Control and Prevention (CDC), Atlanta, Georgia, USA, in cooperation with the World Health Organization Regional Office for Africa, (WHO/AFRO) Harare, Zimbabwe. Jeffrey P. Koplan, M.D., M.P.H., Director, CDC James M. Hughes, M.D., Director, NCID, CDC Mitchell L. Cohen, M.D., Director, Division of Bacterial and Mycotic Diseases, NCID, CDC Ebrahim Malek Samba, M.B.,B.S., Regional Director, WHO/AFRO Antoine Bonaventure Kabore, M.D., M.P.H., Director Division for Prevention and Control of Communicable Diseases, WHO/AFRO The following CDC staff members prepared this report: Cheryl A. Bopp, M.S. Allen A. Ries, M.D., M.P.H. Joy G. Wells, M.S. Production: J. Kevin Burlison, Graphics James D. Gathany, Photography Lynne McIntyre, M.A.L.S., Editor Cover: From top, Escherichia co//O157:H7 on sorbitol MacConkey agar, Vibrio cholerae O1 on TCBS agar, and Shige/la flexneri on xylose lysine desoxycholate agar. Acknowledgments Funding for the development of this manual was provided by the U.S. Agency for International Development, Bureau for Africa, Office of Sustainable Development. This manual was developed as a result of a joint effort by the World Health Organization Regional Office for Africa, WHO Headquarters, and the Centers for Disease Control and Prevention as part of the activities of the WHO Global Task Force on Cholera Control. -
Protocol for Non-Typhoidal Salmonella in Drinking and Surface Water - USEPA
Standard Analytical Protocol for Non-Typhoidal Salmonella in Drinking and Surface Water - USEPA Jeremy Olstadt WI State Laboratory of Hygiene, Madison, WI Background • Prolonged survival in water • 1.2 million illnesses in the US per year (CDC)- most are foodborne • Non-typhoidal Salmonella genus is comprised of Salmonella bongori and Salmonella enterica • 2500 know serotypes – all of which are potential human pathogens • Only a few serotypes cause the majority of illness • Haley (2009) Background • Salmonellosis • Symptoms: diarrhea, vomiting, abdominal cramps • Develops 12-72 hours after infection • Lasts 4-7 days Standard Analytical Procedure - Salmonella • BSL-2 Laboratory • USEPA Method 1682: Salmonella in Sewage Sludge (Biosolids) • Support of EPA Homeland Security Efforts Summary of Method • Identification of Salmonella by: Non-Selective and Selective Media Morphological characteristics Biochemical characteristics Serological characteristics Non-Selective Media – Tryptic Soy Broth XLD Plate, Triple Sugar Iron and Salmonella O antiserum agglutination XLD TSI Antibody Test Selective Media – MSRV Plate-Modified Semisolid Rappaport- Vassiliadis Agar Quantitative Sample Analysis • 15 Tube MPN (most probable number)Method 3 Rows of 5 tubes 10mL of 3X (TSB), 5ml of 3X(TSB) and 10mL of 1X(TSB) Inoculate 10mL 3X TSB tubes with 20 mL of sample Inoculate 5mL 3X TSB with 10mL of sample Inoculate 10mL of 1X TSB with 1 mL of sample Incubate at 36.0oC for 24+ 2 hours Arrangement of TSB Tubes for initial enrichment Isolation of Salmonella on -
Downloaded from the NCBI Genomes Gene-Specific Primers (Additional File 22: Table S13) and Porcelli Et Al
Porcelli et al. BMC Genomics 2013, 14:616 http://www.biomedcentral.com/1471-2164/14/616 RESEARCH ARTICLE Open Access Parallel evolution of genome structure and transcriptional landscape in the Epsilonproteobacteria Ida Porcelli, Mark Reuter, Bruce M Pearson, Thomas Wilhelm and Arnoud HM van Vliet* Abstract Background: Gene reshuffling, point mutations and horizontal gene transfer contribute to bacterial genome variation, but require the genome to rewire its transcriptional circuitry to ensure that inserted, mutated or reshuffled genes are transcribed at appropriate levels. The genomes of Epsilonproteobacteria display very low synteny, due to high levels of reshuffling and reorganisation of gene order, but still share a significant number of gene orthologs allowing comparison. Here we present the primary transcriptome of the pathogenic Epsilonproteobacterium Campylobacter jejuni, and have used this for comparative and predictive transcriptomics in the Epsilonproteobacteria. Results: Differential RNA-sequencing using 454 sequencing technology was used to determine the primary transcriptome of C. jejuni NCTC 11168, which consists of 992 transcription start sites (TSS), which included 29 putative non-coding and stable RNAs, 266 intragenic (internal) TSS, and 206 antisense TSS. Several previously unknown features were identified in the C. jejuni transcriptional landscape, like leaderless mRNAs and potential leader peptides upstream of amino acid biosynthesis genes. A cross-species comparison of the primary transcriptomes of C. jejuni and the related Epsilonproteobacterium Helicobacter pylori highlighted a lack of conservation of operon organisation, position of intragenic and antisense promoters or leaderless mRNAs. Predictive comparisons using 40 other Epsilonproteobacterial genomes suggests that this lack of conservation of transcriptional features is common to all Epsilonproteobacterial genomes, and is associated with the absence of genome synteny in this subdivision of the Proteobacteria. -
Polarity and Secretion of Shigella Flexneri Icsa: a Classical Autotransporter
Polarity and Secretion of Shigella flexneri IcsA: A Classical Autotransporter MATTHEW THOMAS DOYLE, B. SC. (BIOTECHNOLOGY) Submitted for the degree of Doctor of Philosophy Department of Molecular and Cellular Biology School of Biological Sciences The University of Adelaide Adelaide, South Australia, Australia July 2015 Declaration I certify that this Thesis contains no material which has been accepted for the award of any other degree or diploma in my name, in any university or other tertiary institution and, to the best of my knowledge and belief, contains no material previously published or written by another person, except where due reference has been made in the text. I certify that no part of this work will, in the future, be used in a submission in my name for any other degree or diploma in any university or other tertiary institution without the prior approval of the University of Adelaide and where applicable, any partner institution responsible for the joint- award of this degree. I give consent to this copy of my thesis when deposited in the University Library, being made available for loan and photocopying, subject to the provisions of the Copyright Act 1968. I acknowledge that copyright of published works contained within this thesis resides with the copyright holders of those works. I give permission for the digital version of my thesis to be made available on the web, via the University’s digital research repository, the Library Search and also through web search engines, unless permission has been granted by the University to restrict access for a period of time. -
Identification of Shigella Species
UK Standards for Microbiology Investigations 2013 Identification of Shigella species DECEMBER 13 - NOVEMBER 15 BETWEEN ON CONSULTED WAS DOCUMENT THIS - DRAFT Issued by the Standards Unit, Microbiology Services, PHE Bacteriology – Identification | ID 20 | Issue no: di+ | Issue date: dd.mm.yy <tab+enter> | Page: 1 of 20 © Crown copyright 2013 Identification of Shigella species Acknowledgments UK Standards for Microbiology Investigations (SMIs) are developed under the auspices of Public Health England (PHE) working in partnership with the National Health Service (NHS), Public Health Wales and with the professional organisations whose logos are displayed below and listed on the website http://www.hpa.org.uk/SMI/Partnerships. SMIs are developed, reviewed and revised by various working groups which are overseen by a steering committee (see http://www.hpa.org.uk/SMI/WorkingGroups). The contributions of many individuals in clinical, specialist and reference laboratories2013 who have provided information and comments during the development of this document are acknowledged. We are grateful to the Medical Editors for editing the medical content. For further information please contact us at: DECEMBER 13 Standards Unit - Microbiology Services Public Health England 61 Colindale Avenue London NW9 5EQ NOVEMBER E-mail: [email protected] 15 Website: http://www.hpa.org.uk/SMI UK Standards for Microbiology Investigations are produced in association with: BETWEEN ON CONSULTED WAS DOCUMENT THIS - DRAFT Bacteriology – Identification | ID 20 | Issue no: di+ | Issue date: dd.mm.yy <tab+enter> | Page: 2 of 20 UK Standards for Microbiology Investigations | Issued by the Standards Unit, Public Health England Identification of Shigella species Contents ACKNOWLEDGMENTS .......................................................................................................... 2 AMENDMENT TABLE ............................................................................................................