Prosthetic Joint Infection Diagnosis Using Conventional Methods
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Nontuberculous Mycobacteria and the Environment (Insights from Hawai’I)
Nontuberculous mycobacteria and the environment (insights from Hawai’i) Jennifer R. Honda, PhD 23rd Annual Conference of the Union-North America Region Post-Graduate Course 2-20-19 What’s the myco difference? Mycobacterium tuberculosis (M.tb) Nontuberculous mycobacteria (NTM) Lung, intracellular Ubiquitous environmental distribution Typical place of residence: Mycobacterium abscessus species M. gordonae Mycobacterium avium complex (MAC) M. terrae M. avium M. gilvum Pathogenicity M. intracellulare M. smegmatis ruler: M. chimaera 10 9 8 7 6 5 4 3 2 1 Causes TRUE lung disease Opportunistic pathogens Rarely causes lung disease Overall available knowledge: NTM lung disease • General population are constantly exposed, but infection is rare. • Most common of the ”rare lung diseases.” • General population: 4-7/100,000 persons • Elderly (>65yr) 15-47/100,000 persons • Outbreaks of NTM have occurred. • Treatment is inadequate, lengthy, and expensive. • Person-to-person transmission is not known to occur, but may occur in patients with cystic fibrosis in close proximity to infected persons. Why do we care about NTM lung disease? Changing prevalence of NTM and TB in the U.S. Inadequate knowledge NTM TB Zheng, et al. Q J Med, 2013 • In the U.S., nearly 180,000 individuals are infected with NTM. Major mycobacterial lipids • Prevalence is increasing at >8.2% annually. Tran, T. et al, Tubercu J, 2019; under review Contributing host and environmental factors Virulence of NTM Most HOST-RISK FACTORS Least ANATOMIC ENVIRONMENTAL Prior bronchiectasis EXPOSURE Emphysema Aerosolized water (hot tubs, Pneumoconiosis showerheads) Chronic aspiration Aerosolized soil exposure Calcified chest adenopathy Residence in Southeast U.S. -
Extracellular Traps Released by Antimicrobial TH17 Cells Contribute to Host Defense
Extracellular traps released by antimicrobial TH17 cells contribute to host defense George W. Agak, … , Matteo Pellegrini, Robert L. Modlin J Clin Invest. 2020. https://doi.org/10.1172/JCI141594. Research In-Press Preview Immunology TH17 cell subpopulations have been defined that contribute to inflammation and homeostasis, yet the characteristics of TH17 cells that contribute to host defense against infection are not clear. To elucidate the antimicrobial machinery of the TH17 subset, we studied the response to Cutibacterium acnes, a skin commensal that is resistant to IL-26, the only known TH17 secreted protein with direct antimicrobial activity. We generated C. acnes-specific antimicrobial TH17 clones (AMTH17) with varying antimicrobial activity against C. acnes, which we correlated by RNA-seq to the expression of transcripts encoding proteins that contribute to antimicrobial activity. Additionally, we validated that AMTH17-mediated killing of C. acnes as well as bacterial pathogens, was dependent on the secretion of granulysin, granzyme B, perforin and histone H2B. We found that AMTH17s can release fibrous structures composed of DNA decorated with the histone H2B that entangle C. acnes that we call T cell extracellular traps (TETs). Within acne lesions, H2B and IL-17 colocalized in CD4+ T cells, in proximity to TETs in the extracellular space composed of DNA decorated with H2B. This study identifies a functionally distinct subpopulation of TH17 cells with an ability to form TETs containing secreted antimicrobial proteins that capture and kill bacteria. Find the latest version: https://jci.me/141594/pdf Extracellular traps released by antimicrobial TH17 cells contribute to host defense George W. -
Leprae by Means of Cytoplasmic Antigens
Bull. Org. mond. Santt 1972, 46, 509-513 Bull. Wld Hlth Org. Immunological determination of Mycobacterium leprae by means of cytoplasmic antigens J. B. G. KWAPINSKI,1 J. 0. DE ALMEIDA,2 & E. H. KWAPINSKI 3 Mycobacterium leprae was isolated and purified from lepromas, the spleen, and the liver of leprosy patients. An immunodiffusion analysis of the cytoplasms obtained from four lots of M. leprae and M. lepraemurium, 295 strains of different actinomycetales, and 12 other bacteria was performed with the use ofthe cytoplasm antisera. Immunological relationships were revealed between the cytoplasms of M. leprae, M. lepraemurium, M. avium, M. gallinarum, M. tuberculosis, M. simiae, M. kansasii, M. chitae, M. cap- sulatum, Actinomyces israelii, A. naeslundii, and some strains of saprophytic myco- bacteria. These studies led to the proposed concept of the immunological evolution of M. leprae and M. lepraemurium and an Actinomyces-like progenitor through M. avium- M. gallinarum and to a proposal for the polyvalent vaccine currently being developed by this research group. Most of the past immunological research on lep- help to elucidate the immunogenicity of M. leprae rosy dealt with the skin or serum reactions of leprosy and would be useful for the preparation of an anti- patients with different mycobacterial antigen prepa- leprosy vaccine. rations. Almost all of these data were critically re- viewed by Bechelli (1971) and by de Almeida.4 More recently, the cross-reactions given by polysaccharide- MATERIALS AND METHODS protein complexes purified from M. leprae with the Sources of M. leprae and M. lepraemurium sera obtained from human leprosy, tuberculosis, and nocardiosis were revealed by Estrada-Parra (1970). -
Pdfs/ Ommended That Initial Cultures Focus on Common Pathogens, Pscmanual/9Pscssicurrent.Pdf)
Clinical Infectious Diseases IDSA GUIDELINE A Guide to Utilization of the Microbiology Laboratory for Diagnosis of Infectious Diseases: 2018 Update by the Infectious Diseases Society of America and the American Society for Microbiologya J. Michael Miller,1 Matthew J. Binnicker,2 Sheldon Campbell,3 Karen C. Carroll,4 Kimberle C. Chapin,5 Peter H. Gilligan,6 Mark D. Gonzalez,7 Robert C. Jerris,7 Sue C. Kehl,8 Robin Patel,2 Bobbi S. Pritt,2 Sandra S. Richter,9 Barbara Robinson-Dunn,10 Joseph D. Schwartzman,11 James W. Snyder,12 Sam Telford III,13 Elitza S. Theel,2 Richard B. Thomson Jr,14 Melvin P. Weinstein,15 and Joseph D. Yao2 1Microbiology Technical Services, LLC, Dunwoody, Georgia; 2Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota; 3Yale University School of Medicine, New Haven, Connecticut; 4Department of Pathology, Johns Hopkins Medical Institutions, Baltimore, Maryland; 5Department of Pathology, Rhode Island Hospital, Providence; 6Department of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill; 7Department of Pathology, Children’s Healthcare of Atlanta, Georgia; 8Medical College of Wisconsin, Milwaukee; 9Department of Laboratory Medicine, Cleveland Clinic, Ohio; 10Department of Pathology and Laboratory Medicine, Beaumont Health, Royal Oak, Michigan; 11Dartmouth- Hitchcock Medical Center, Lebanon, New Hampshire; 12Department of Pathology and Laboratory Medicine, University of Louisville, Kentucky; 13Department of Infectious Disease and Global Health, Tufts University, North Grafton, Massachusetts; 14Department of Pathology and Laboratory Medicine, NorthShore University HealthSystem, Evanston, Illinois; and 15Departments of Medicine and Pathology & Laboratory Medicine, Rutgers Robert Wood Johnson Medical School, New Brunswick, New Jersey Contents Introduction and Executive Summary I. -
A Case of Disseminated Infection Due to Actinomyces Meyeri Involving
Case Report Infection & http://dx.doi.org/10.3947/ic.2014.46.4.269 Infect Chemother 2014;46(4):269-273 Chemotherapy ISSN 2093-2340 (Print) · ISSN 2092-6448 (Online) A Case of Disseminated Infection due to Actinomyces meyeri Involving Lung and Brain Hyun Jung Park1, Ki-Ho Park3, Sung-Han Kim1, Heungsup Sung2, Sang-Ho Choi1, Yang Soo Kim1, Jun Hee Woo1, and Sang-Oh Lee1 Departments of 1Internal Medicine and 2Laboratory Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul; 3Department of Internal Medicine, Kyung Hee University School of Medicine, Seoul, Korea Actinomyces meyeri is rarely isolated in cases of actinomycosis. The identification of A. meyeri had historically been difficult and unreliable. With the recent development of 16S ribosomal RNA (16S rRNA) sequencing, Actinomyces species such as A. meyeri can be isolated much more reliably. A. meyeri often causes disseminated disease, which can be secondary to frequent pulmonary infections. A penicillin-based regimen is the mainstay of A. meyeri treatment, with a prolonged course usually re- quired. Here, we report a case of pulmonary actinomycosis with brain abscess caused by A. meyeri that was initially thought to represent lung cancer with brain metastasis. Key Words: Actinomyces; Sequence analysis, RNA; Brain abscess Introduction cies to cause similar clinical disease is largely unknown [2]. Recent developments in microbiological identification tech- Actinomycosis is a chronic infection caused by organisms in niques, especially 16S ribosomal RNA (16S rRNA) sequencing, the genus Actinomyces, with Actinomyces israelii being the have identified other Actinomyces species such as A. meyeri, most common etiologic agent [1]. -
Common Commensals
Common Commensals Actinobacterium meyeri Aerococcus urinaeequi Arthrobacter nicotinovorans Actinomyces Aerococcus urinaehominis Arthrobacter nitroguajacolicus Actinomyces bernardiae Aerococcus viridans Arthrobacter oryzae Actinomyces bovis Alpha‐hemolytic Streptococcus, not S pneumoniae Arthrobacter oxydans Actinomyces cardiffensis Arachnia propionica Arthrobacter pascens Actinomyces dentalis Arcanobacterium Arthrobacter polychromogenes Actinomyces dentocariosus Arcanobacterium bernardiae Arthrobacter protophormiae Actinomyces DO8 Arcanobacterium haemolyticum Arthrobacter psychrolactophilus Actinomyces europaeus Arcanobacterium pluranimalium Arthrobacter psychrophenolicus Actinomyces funkei Arcanobacterium pyogenes Arthrobacter ramosus Actinomyces georgiae Arthrobacter Arthrobacter rhombi Actinomyces gerencseriae Arthrobacter agilis Arthrobacter roseus Actinomyces gerenseriae Arthrobacter albus Arthrobacter russicus Actinomyces graevenitzii Arthrobacter arilaitensis Arthrobacter scleromae Actinomyces hongkongensis Arthrobacter astrocyaneus Arthrobacter sulfonivorans Actinomyces israelii Arthrobacter atrocyaneus Arthrobacter sulfureus Actinomyces israelii serotype II Arthrobacter aurescens Arthrobacter uratoxydans Actinomyces meyeri Arthrobacter bergerei Arthrobacter ureafaciens Actinomyces naeslundii Arthrobacter chlorophenolicus Arthrobacter variabilis Actinomyces nasicola Arthrobacter citreus Arthrobacter viscosus Actinomyces neuii Arthrobacter creatinolyticus Arthrobacter woluwensis Actinomyces odontolyticus Arthrobacter crystallopoietes -
A Phylogenetic Approach in Actinobacteria
On the nature of fur evolution: A phylogenetic approach in Actinobacteria Catarina L Santos, João Vieira, Fernando Tavares, David R Benson, Louis S Tisa, Alison M Berry, Pedro Moradas-Ferreira, Philippe Normand To cite this version: Catarina L Santos, João Vieira, Fernando Tavares, David R Benson, Louis S Tisa, et al.. On the nature of fur evolution: A phylogenetic approach in Actinobacteria. BMC Evolutionary Biology, BioMed Central, 2008, 8 (185), pp.1-14. 10.1186/1471-2148-8-185. halsde-00354531 HAL Id: halsde-00354531 https://hal.archives-ouvertes.fr/halsde-00354531 Submitted on 30 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. BMC Evolutionary Biology BioMed Central Research article Open Access On the nature of fur evolution: A phylogenetic approach in Actinobacteria Catarina L Santos*1,2, João Vieira1, Fernando Tavares1,2, David R Benson3, Louis S Tisa4, Alison M Berry5, Pedro Moradas-Ferreira1,6 and Philippe Normand7 Address: 1IBMC – Instituto de Biologia Molecular e Celular, Universidade do Porto, Rua do Campo Alegre, 823, 4150-180 Porto, Portugal, 2Faculdade de Ciências da Universidade do Porto, Departamento de Botânica, Rua do Campo Alegre 1191, 4150-181 Porto, Portugal, 3Department of Molecular and Cell Biology, University of Connecticut, Storrs, CT 06279, USA, 4Department of Microbiology, University of New Hampshire, Durham, NH, 03824, USA, 5Department of Plant Sciences, Mail Stop 1, PES Building, University of California, Davis, CA 95616, USA, 6Instituto de Ciências Biomédicas Abel Salazar, Lg. -
Are There Good Models of Sarcoidosis?”
Journal of Clinical Medicine Review Models Contribution to the Understanding of Sarcoidosis Pathogenesis: “Are There Good Models of Sarcoidosis?” Valérie Besnard 1,* and Florence Jeny 1,2 1 UMR 1272, Hypoxie & Poumon, Université Sorbonne Paris Nord, 1 rue de Chablis, 93017 Bobigny, France; fl[email protected] 2 AP-HP, Hôpital Avicenne, Service de Pneumologie, 93017 Bobigny, France * Correspondence: [email protected]; Tel.: +33-148-388-877; Fax: +33-148-388-924 Received: 8 July 2020; Accepted: 27 July 2020; Published: 31 July 2020 Abstract: Sarcoidosis is a systemic, granulomatous, and noninfectious disease of unknown etiology. The clinical heterogeneity of the disease (targeted tissue(s), course of the disease, and therapy response) supports the idea that a multiplicity of trigger antigens may be involved. The pathogenesis of sarcoidosis is not yet completely understood, although in recent years, considerable efforts were put to develop novel experimental research models of sarcoidosis. In particular, sarcoidosis patient cells were used within in vitro 3D models to study their characteristics compared to control patients. Likewise, a series of transgenic mouse models were developed to highlight the role of particular signaling pathways in granuloma formation and persistence. The purpose of this review is to put in perspective the contributions of the most recent models in the understanding of sarcoidosis. Keywords: sarcoidosis; models; macrophage; lung; granuloma 1. Introduction Sarcoidosis is a systemic disease of unknown etiology that is characterized by the formation of immune granulomas in different organs, mainly the lungs, the lymphatic system, the skin, the eye, and the heart [1]. The diagnosis consists of the association of compatible clinical, biological, and radiological signs, the histological demonstration of a granuloma characteristic of sarcoidosis, and the elimination of other causes of granulomatosis [2]. -
Tropheryma Whipplei Was 44%
DISPATCHES (mean 3.5 years ± 2.5 years) living in 2 villages in Senegal Tropheryma (Ndiop, 77 children; Dielmo, 73 children) (6). These vil- lages are included in the Dielmo project, initiated in 1990 whipplei in Fecal for long-term investigations of host–parasite associations in the entire village population, which was enrolled in a Samples from longitudinal prospective study (6,7). At the beginning of Children, Senegal the current study, parents or legal guardians of all children gave individual informed consent. The national ethics com- Florence Fenollar, Jean-François Trape, mittee of Senegal approved the project (6). Eight wells in Hubert Bassene, Cheikh Sokhna, the 2 villages (5 from Dielmo, 3 from Ndiop), which are the and Didier Raoult only sources of drinking water for the communities, also were sampled. We tested fecal samples from 150 healthy children After collection, each fecal specimen was mixed with 2–10 years of age who lived in rural Senegal and found the 2.5 mL of absolute ethanol for storage and transportation prevalence of Tropheryma whipplei was 44%. Unique geno- to our laboratory at room temperature. On arrival, DNA types were associated with this bacterium. Our findings was extracted by using the BioRobot MDx workstation suggest that T. whipplei is emerging as a highly prevalent pathogen in sub-Saharan Africa. (QIAGEN, Valencia, CA, USA) in accordance with the manufacturer’s recommendations and protocols. T. whip- plei quantitative PCR assays were performed as previously ropheryma whipplei is known mainly as the bacterial described (8). A case was defined as 2 positive quantita- T pathogen responsible for Whipple disease (1). -
INTERNATIONAL BULLETIN of BACTERIOLOGICAL NOMENCLATURE and TAXONOMY Vol
INTERNATIONAL BULLETIN OF BACTERIOLOGICAL NOMENCLATURE AND TAXONOMY Vol. 15, No. 3 July 15, 1965 pp. 143-163 THE CLASSIFICATION AND PHYLOGENETIC RELATIONSHIPS OF THE ACTINOMYCETALES ' Leo Pine and Lucille Georg Communicable Disease Center, Public Health Service, U. S. Department of Health, Education, and Welfare, Atlanta, Georgia SUMMARY. The taxonomic and phylogenetic re- lationships of members of the order Actino- mycetales have been examined. On the basis of cellular and colony morphology, cell wall composition, fermentation products, and cer- tain physiological characteristics, the taxa within the family Actinomycetaceae were divided into two groups. Each group was closely related to members of the family -Lactobacillaceae. One group consisted of Actinomyces israelii, -A. naeslundii, ,A. pro- pionicus, Nocardia dentocariosus and Odonto- myces viscosis ("hamster organism"). The second group consisted of bovis, ,A. erik- sonii, and Lactobacillus bifidusA. type 11 (k parabifidus). This latter organism was re- named Actinomyces pa.rabifidus nov. comb. because its morphological, physiological and biochemical characteristics related it to the members of both groups of the genus Actino- myces. The families Streptomycetaceae and Mycobacteriaceae appeared more closely re- lated to the family Corynebacteriaceae than to the family Actinomycetaceae. The use of certain criteria for classification and deter- mination of phylogenetic relationships was discussed. We have stressed those areas in which necessasy information is lacking. A report to -
Actinomycetes (Branching Bacteria ): Dr.Jawad K
College of Medicine Microbiology Medical bacteriology Actinomycetes (branching bacteria ): Dr.Jawad K. Al-Khafaji ----------------------------------------------------------------------------------------- Actinomycete (fungus-like bacteria) resembles fungus as it forms mycelia and resemble bacteria as it has not true nucleus. Important properties: 1. Actinomycetes for many years were classified as fungi because the actinomycetes are form long branching filaments that resemble the hyphae of fungi .But they are reclassified as bacteria since they are thin, possesses cell wall containing muramic acid, it has prokaryotic nuclei and susceptible to bacterial antibiotic agents. 2. Actinomycetes are common in soil .There are two medically important organisms, Actinomyces israelii and Nocardia asteroids . A.israelii is anaerobe that forms part of normal flora of oral cavity. N.asteroides is aerobe and is found in environment, particularly in the soil. 3. They are gram-positive bacilli. Many isolates of N.asteroides are weakly acid fast stain. 4. The A israelii is strict anaerobic; whereas N.asteroides is grow under strict aerobic conditions. Transmission : A.israelii infection is acquired endogenously, from normal oral flora. There is no person to person spread. Infection of N.asteroides is acquired from soil by airborne route. Actinomycetes infections are not transmitted from person to person ( the diseases are not communicable ). Pathogenesis : Actinomycetes are responsible for three human infections. 1. Actinomycosis is caused by A.israelii in human or by A.bovis in cattle. The disease is chronic suppurative and granulomatous infection that produces pyogenic lesions with interconnecting sinus tract that contain sulfur granules. Three forms are (i)Cervicofacial lesion is most common ,especially among poor dental hygiene and tooth extraction. -
ABSA General Microbiology Fact Sheets
GENERAL MICROBIOLOGY FACT SHEET Signs & Pathogen Genus species Disease Risk Group Host Range Transmission Symptoms Incubation Fact Micrograph Bacteria Actinomcyces spp. Actinomycosis Humans, cattle, Person-to-person by contact of Opportunistic pathogen. Chronic bacterial variable - days to months. Fatality rate of 5-20% if untreated. Opportuinistic Actinomyces israelii horses mouth, aerosols, fomites. disease localized in jaw, thorax, or pathogen. abdomen. Characterized by persistent swelling, suppuration and formation of 2 abscesses or granulomas. Bacteria Bacillus cereus Food Poisoning Humans Ingestion of foods kept at Opportunistic pathogen; intoxication 1-6 hours, average 4 hours; Infectious dose is greater than 10e6 organisms by ambient conditions after characterized by two forms: an emetic form diarrheal form 6-24 hours ingestion (>10e5 organisms/g of food). cooking; emetic form frequently with severe nausea and vomiting and a (average 17 hours) associated with cooked rice. diarrheal form with abdominal cramps and 2 Not communicable from person diarrhea. Usually mild and self-limiting (24 to person. hrs). Bacteria Bordetella pertussis Whooping Cough Humans Direct contact with discharges Stage 1: Catarrhal: Irritating cough, lasts 1 6-20 days Common in children worldwide; pertussis is among the from respiratory mucous to 2 weeks; Stage 2: Paroxysmal; violent most lethal infant diseases- membranes of infected persons coughs followed by a high pitched Treatment with dTaP(acellular pertussis vaccine, a by the airborne route. inspiratory whoop, lasts 2 to 6 weeks; preventive vaccine) is now available for adults 2 Stage 3: Convalescent; the cough gradually decreases in frequency and severity, lasts several weeks Bacteria Brucella melitensis Brucellosis Humans, swine, Skin or mucous membrane High and protracted (extended) fever.