Effects of Low Frequency Rectangular Electric Pulses on Trichoplax (Placozoa)
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Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
Simple Animals Sponges and Placozoa the Twig of the Tree That Is the Animals the Tour Begins
Animal Kingdom Simple animals Sponges and placozoa Tom Hartman Asymmetry www.tuatara9.co.uk Animal form and function 1 Module 111121 2 The twig of the tree that is the animals Animals All other animals Animals Sponges Choanoflagellates Choanoflagellates Fungi Fungi 3 4 All other animals Animals (bilateralia) Radiata Sponges Choanoflagellates Fungi The tour begins 5 6 1 Animal Kingdom The Phylum Quirky phyla • In the standard Linnean system (and taxonomic systems • There are 39 animal phyla (+/- 10!) based on it), a Phylum is the taxonomic category between Kingdom and Class. • The Micrognathozoa were • A phylum is a major ranking of organisms, defined discovered in 2000 (1 species)in according to the most basic body-parts shared by that springs in Greenland. group. But we must include the creatures and their • Xenoturbellida removed from the common ancestor. molluscs and moved to the – Chordata (animals with a notochord - vertebrates and others), – Arthropoda (animals with a jointed exoskeleton) dueterostomes when DNA – Mollusca (animals with a shell-secreting mantle), evidence was discounted due to – Angiosperma (flowering plants), and so on. what it had eaten! – A number of traditional Phyla - e.g. Protozoa, possibly Arthropoda - • Cycliophora discovered on the are probably invalid (polyphyletic). lips of lobsters in 1995. 7 8 The Class Our journey • In the Linnean system (and taxonomic systems Kingdom Group Phylum based on it), a Class is the taxonomic category Porifera between Phylum and Order. Placozoa • A class is a major group of organisms, e.g. Cnidaria Mammalia, Gastropoda, Insecta, etc that Parazoa Ctenophora contains a large number of different Radiata Platyhelminthes sublineages, but have shared characteristics in Animalia Protostome Rotifera common e.g. -
Animal Evolution: Trichoplax, Trees, and Taxonomic Turmoil
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Dispatch R1003 Dispatches Animal Evolution: Trichoplax, Trees, and Taxonomic Turmoil The genome sequence of Trichoplax adhaerens, the founding member of the into the same major classes (C, E/F enigmatic animal phylum Placozoa, has revealed that a surprising level of and B) as do those described from genetic complexity underlies its extremely simple body plan, indicating either Amphimedon [4]. Consistent with that placozoans are secondarily simple or that there is an undiscovered a more derived position, however, morphologically complex life stage. Trichoplax has a number of Antp superclass Hox genes that are absent David J. Miller1 and Eldon E. Ball2 but no other axial differentiation, from the sponge Amphimedon. resembling an amoeba. Grell [3] who These include the ‘ParaHox’ gene With the recent or imminent release formally described these common but Trox-2 [5] and the extended Hox of the whole genome sequences of inconspicuous marine organisms as family gene Not [6] known from a number of key animal species, this belonging to a new phylum, assumed previous work. Particularly intriguing is an exciting time for the ‘evo-devo’ that their simplicity is primary, and is the discovery in Trichoplax of many community. In the last twelve months, that they therefore must represent genes associated with neuroendocrine whole genome analyses of the a key stage in animal evolution. This function across the Bilateria; in cnidarian Nematostella vectensis, view is still held by several prominent common with Amphimedon [7], many the choanoflagellate Monosiga Trichoplax biologists, but has always elements of the post-synaptic scaffold brevicollis and the cephalochordate been contentious; the view that it is are present, but so too are channel Branchiostoma floridae (commonly derived from a more complex ancestor and receptor proteins not known from known as amphioxus) have been has recently been gaining momentum sponges. -
Transepithelial Cytophagy by Trichoplax Adhaerens FE Schulze
Transepithelial Cytophagy by Trichoplax adhaerens F. E. Schulze (Placozoa) Feeding on Yeast Heinz Wenderoth Lehrstuhl für Zellmorphologie, Ruhr-Universität Bochum, D-4630 Bochum 1, Bundesrepublik Deutschland Z. Naturforsch. 41c, 343—347 (1986); received November 8, 1985 Trichoplax adhaerens. Yeast. Phagocytosis After accidental observations of unicellular algae trapped in the intermediate layer of Tricho plax, dead yeast cells were offered systematically as a food. Some of them could be found several hours later engulfed by the big tetraploid fibre cells closely beneath the dorsal epithelium of the animal. This thin epithelial sheet not only allows the expulsion of accumulated waste substances by temporal separation of the cell connections but obviously gives also access to food particles collected previously on the dorsal surface by flagellar movements. Thus, the uppermost cell layer of Trichoplax permits the passage of corpuscles of limited size between its cells. Introduction countered within the Trichoplax body and in close contact with the fibre cells [11], and Grell and Ben- Trichoplax is a primitive multicellular animal that witz [3] noted starch granules derived from the food is found world-wide in the littoral areas of tropical and subtropical seas. It has a plate-like appearance organism, Cryptomonas, within the concrement vac uoles of fibre cells. Feeding experiments with latex and is only 0.2—2 mm wide. There are three cell layers: A flat dorsal epithelium, equipped with beads and human erythrocytes were unsuccessful though particles were regularly collected on the dor flagella; a ventral epithelium of columnar cells, also sal epithelium (Fig. 1). So other material that could bearing flagella; an intermediate layer of rather large serve as a food was sought for and yeast was tried. -
The Phylogeography of the Placozoa Suggests a Taxonrich Phylum In
Molecular Ecology (2010) 19, 2315–2327 doi: 10.1111/j.1365-294X.2010.04617.x The phylogeography of the Placozoa suggests a taxon-rich phylum in tropical and subtropical waters M. EITEL* and B. SCHIERWATER*† *Tiera¨rztliche Hochschule Hannover, ITZ, Ecology and Evolution, Bu¨nteweg 17d, D-30559 Hannover, Germany, †American Museum of Natural History, New York, Division of Invertebrate Zoology, 79 St at Central Park West, New York, NY 10024, USA Abstract Placozoa has been a key phylum for understanding early metazoan evolution. Yet this phylum is officially monotypic and with respect to its general biology and ecology has remained widely unknown. Worldwide sampling and sequencing of the mitochondrial large ribosomal subunit (16S) reveals a cosmopolitan distribution in tropical and subtropical waters of genetically different clades. We sampled a total of 39 tropical and subtropical locations worldwide and found 23 positive sites for placozoans. The number of genetically characterized sites was thereby increased from 15 to 37. The new sampling identified the first genotypes from two new oceanographic regions, the Eastern Atlantic and the Indian Ocean. We found seven out of 11 previously known haplotypes as well as five new haplotypes. One haplotype resembles a new genetic clade, increasing the number of clades from six to seven. Some of these clades seem to be cosmopolitan whereas others appear to be endemic. The phylogeography also shows that different clades occupy different ecological niches and identifies several euryoecious haplotypes with a cosmopolitic distribution as well as some stenoecious haplotypes with an endemic distribution. Haplotypes of different clades differ substantially in their phylogeographic distribution according to latitude. -
Systema Naturae. the Classification of Living Organisms
Systema Naturae. The classification of living organisms. c Alexey B. Shipunov v. 5.601 (June 26, 2007) Preface Most of researches agree that kingdom-level classification of living things needs the special rules and principles. Two approaches are possible: (a) tree- based, Hennigian approach will look for main dichotomies inside so-called “Tree of Life”; and (b) space-based, Linnaean approach will look for the key differences inside “Natural System” multidimensional “cloud”. Despite of clear advantages of tree-like approach (easy to develop rules and algorithms; trees are self-explaining), in many cases the space-based approach is still prefer- able, because it let us to summarize any kinds of taxonomically related da- ta and to compare different classifications quite easily. This approach also lead us to four-kingdom classification, but with different groups: Monera, Protista, Vegetabilia and Animalia, which represent different steps of in- creased complexity of living things, from simple prokaryotic cell to compound Nature Precedings : doi:10.1038/npre.2007.241.2 Posted 16 Aug 2007 eukaryotic cell and further to tissue/organ cell systems. The classification Only recent taxa. Viruses are not included. Abbreviations: incertae sedis (i.s.); pro parte (p.p.); sensu lato (s.l.); sedis mutabilis (sed.m.); sedis possi- bilis (sed.poss.); sensu stricto (s.str.); status mutabilis (stat.m.); quotes for “environmental” groups; asterisk for paraphyletic* taxa. 1 Regnum Monera Superphylum Archebacteria Phylum 1. Archebacteria Classis 1(1). Euryarcheota 1 2(2). Nanoarchaeota 3(3). Crenarchaeota 2 Superphylum Bacteria 3 Phylum 2. Firmicutes 4 Classis 1(4). Thermotogae sed.m. 2(5). -
Global Diversity of the Placozoa
Review Global Diversity of the Placozoa Michael Eitel1,2*, Hans-Ju¨ rgen Osigus1, Rob DeSalle3, Bernd Schierwater1,3,4 1 Stiftung Tiera¨rztliche Hochschule Hannover, Institut fu¨r Tiero¨kologie und Zellbiologie, Ecology and Evolution, Hannover, Germany, 2 The Swire Institute of Marine Science, Faculty of Science, School of Biological Sciences, The University of Hong Kong, Hong Kong, 3 Sackler Institute for Comparative Genomics and Division of Invertebrate Zoology, American Museum of Natural History, New York, New York, United States of America, 4 Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America ‘Urmetazoon’ ([7,33]; for a historical summary of placozoan Abstract: The enigmatic animal phylum Placozoa holds a research see [34–36]). More than a century after the discovery of key position in the metazoan Tree of Life. A simple Trichoplax adhaerens the phylum status of the Placozoa – as bauplan makes it appear to be the most basal metazoan envisioned by Schulze – was finally accepted. known and genetic evidence also points to a position It is important to note that animals described as Trichoplax close to the last common metazoan ancestor. Trichoplax adhaerens in Grell and colleagues’ studies might, although being adhaerens is the only formally described species in the morphologically highly similar to Schulze’s Trichoplax, actually phylum to date, making the Placozoa the only monotypic phylum in the animal kingdom. However, recent molec- belong to a different species. Given our current knowledge of ular genetic as well as morphological studies have placozoan diversity (see below) it is evident that the various studies identified a high level of diversity, and hence a potential of placozoans accomplished over the years have pooled a broad high level of taxonomic diversity, within this phylum. -
A Screen for Gene Paralogies Delineating Evolutionary Branching Order of Early Metazoa
bioRxiv preprint doi: https://doi.org/10.1101/704551; this version posted July 17, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. A screen for gene paralogies delineating evolutionary branching order of early Metazoa Albert Erives and Bernd Fritzsch Department of Biology, University of Iowa, Iowa City, IA, 52242, USA. E-mails for correspondence: [email protected], [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/704551; this version posted July 17, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. The evolutionary diversification of animals is one of nature’s greatest mysteries. In addition, animals evolved wildly divergent multicellular life strategies featuring ciliated sensory epithelia. In many lineages epithelial sensoria became coupled to increasingly complex nervous systems. Currently, different phylogenetic analyses of single-copy genes support mutually-exclusive possibilities that either Porifera or Ctenophora is sister to all other animals. Resolving this dilemma would advance the ecological and evolutionary understanding of the first animals. Here we computationally identify and analyze gene families with ancient duplications that could be informative. In the TMC family of mechano-transducing transmembrane channels, we find that eumetazoans are composed of Placozoa, Cnidaria, and Bilateria, excluding Ctenophora. -
Mixotrophic Chemosynthesis in a Deep-Sea Anemone from Hydrothermal Vents in the Pescadero Basin, Gulf of California Shana K
Goffredi et al. BMC Biology (2021) 19:8 https://doi.org/10.1186/s12915-020-00921-1 RESEARCH ARTICLE Open Access Mixotrophic chemosynthesis in a deep-sea anemone from hydrothermal vents in the Pescadero Basin, Gulf of California Shana K. Goffredi1* , Cambrie Motooka1, David A. Fike2, Luciana C. Gusmão3, Ekin Tilic4, Greg W. Rouse5 and Estefanía Rodríguez3 Abstract Background: Numerous deep-sea invertebrates, at both hydrothermal vents and methane seeps, have formed symbiotic associations with internal chemosynthetic bacteria in order to harness inorganic energy sources typically unavailable to animals. Despite success in nearly all marine habitats and their well-known associations with photosynthetic symbionts, Cnidaria remain one of the only phyla present in the deep-sea without a clearly documented example of dependence on chemosynthetic symbionts. Results: A new chemosynthetic symbiosis between the sea anemone Ostiactis pearseae and intracellular bacteria was discovered at ~ 3700 m deep hydrothermal vents in the southern Pescadero Basin, Gulf of California. Unlike most sea anemones observed from chemically reduced habitats, this species was observed in and amongst vigorously venting fluids, side-by-side with the chemosynthetic tubeworm Oasisia aff. alvinae. Individuals of O. pearseae displayed carbon, nitrogen, and sulfur tissue isotope values suggestive of a nutritional strategy distinct from the suspension feeding or prey capture conventionally employed by sea anemones. Molecular and microscopic evidence confirmed the presence of intracellular SUP05-related bacteria housed in the tentacle epidermis of O. pearseae specimens collected from 5 hydrothermally active structures within two vent fields ~ 2 km apart. SUP05 bacteria (Thioglobaceae) dominated the O. pearseae bacterial community, but were not recovered from other nearby anemones, and were generally rare in the surrounding water. -
Animal Evolution: the Enigmatic Phylum Placozoa Revisited
Current Biology Vol 15 No 1 R26 networks and have a very low turnover in 12. Rabut, G., Lenart, P., and Ellenberg, J. formation in Aspergillus is coupled to live mammalian cells. J. Cell Biol. 154, (2004). Dynamics of nuclear pore tubulin movement into the nucleus. Mol. 71–84. complex organization through the cell Biol. Cell 14, 2192–2200. 9. Rabut, G., Doye, V., and Ellenberg, J. cycle. Curr. Opin. Cell Biol. 16, 314–321. 17. Lenart, P., Rabut, G., Daigle, N., Hand, (2004). Mapping the dynamic 13. Goldberg, M.W., Rutherford, S.A., A.R., Terasaki, M., and Ellenberg, J. organization of the nuclear pore complex Hughes, M., Cotter, L.A., Bagley, S., (2003). Nuclear envelope breakdown in inside single living cells. Nat. Cell Biol. 6, Kiseleva, E., Allen, T.D., and Clarke, P.R. starfish oocytes proceeds by partial NPC 1114–1121. (2000). Ran Alters Nuclear Pore Complex disassembly followed by a rapidly 10. Walther, T.C., Alves, A., Pickersgill, H., Conformation. J. Mol. Biol. 300, 519–529. spreading fenestration of nuclear Loiodice, I., Hetzer, M., Galy, V., 14. Feldherr, C.M., Akin, D., and Cohen, R.J. membranes. J. Cell Biol. 160, 1055–1068. Hulsmann, B.B., Kocher, T., Wilm, M., (2001). Regulation of functional nuclear Allen, T., et al. (2003). The conserved pore size in fibroblasts. J. Cell Sci. 114, Nup107–160 complex is critical for Department of Biochemistry and 4621–4627. nuclear pore complex assembly. Cell 15. De Souza, C.P., Horn, K.P., Masker, K., Molecular Biology, Baylor College of 113, 195–206. Medicine, One Baylor Plaza, Houston, 11. -
Genera of the World: an Overview and Estimates Based on the March 2020 Release of the Interim Register of Marine and Nonmarine Genera (IRMNG)
Megataxa 001 (2): 123–140 ISSN 2703-3082 (print edition) https://www.mapress.com/j/mt/ MEGATAXA Copyright © 2020 Magnolia Press Article ISSN 2703-3090 (online edition) https://doi.org/10.11646/megataxa.1.2.3 http://zoobank.org/urn:lsid:zoobank.org:pub:F4A52C97-BAD0-4FD5-839F-1A61EA40A7A3 All genera of the world: an overview and estimates based on the March 2020 release of the Interim Register of Marine and Nonmarine Genera (IRMNG) TONY REES 1, LEEN VANDEPITTE 2, 3, BART VANHOORNE 2, 4 & WIM DECOCK 2, 5 1 Private address, New South Wales, Australia. �[email protected]; http://orcid.org/0000-0003-1887-5211 2 Flanders Marine Institute/Vlaams Instituut Voor De Zee (VLIZ), Wandelaarkaai 7, 8400 Ostend, Belgium. 3 �[email protected]; http://orcid.org/0000-0002-8160-7941 4 �[email protected]; https://orcid.org/0000-0002-6642-4725 5 �[email protected]; https://orcid.org/0000-0002-2168-9471 Abstract Introduction We give estimated counts of known accepted genera of the The concept of a series of papers addressing portions of world (297,930±65,840, of which approximately 21% are the question of “all genera of the world” is a valuable one, fossil), of a total 492,620 genus names presently held for which can benefit from as much preliminary scoping as “all life”, based on the March 2020 release of the Interim may be currently available. To date, synoptic surveys of Register of Marine and Nonmarine Genera (IRMNG). A fur- biodiversity have been attempted mainly at the level of ther c. -
Global Habitat Suitability and Ecological Niche Separation in the Phylum Placozoa
RESEARCH ARTICLE Global Habitat Suitability and Ecological Niche Separation in the Phylum Placozoa Omid Paknia1*, Bernd Schierwater1,2,3 1 ITZ, Ecology and Evolution, TiHo Hannover, Hannover, Germany, 2 Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America, 3 Sackler Institute for Comparative Genomics and Division of Invertebrate Zoology, American Museum of Natural History, New York, New York, United States of America * [email protected] Abstract a11111 The enigmatic placozoans, which hold a key position in the metazoan Tree of Life, have attracted substantial attention in many areas of biological and biomedical research. While placozoans have become an emerging model system, their ecology and particularly bioge- ography remain widely unknown. In this study, we use modelling approaches to explore habitat preferences, and distribution pattern of the placozoans phylum. We provide hypoth- OPEN ACCESS eses for discrete ecological niche separation between genetic placozoan lineages, which may also help to understand biogeography patterns in other small marine invertebrates. Citation: Paknia O, Schierwater B (2015) Global Habitat Suitability and Ecological Niche Separation in We, here, used maximum entropy modelling to predict placozoan distribution using 20 envi- the Phylum Placozoa. PLoS ONE 10(11): e0140162. ronmental grids of 9.2 km2 resolution. In addition, we used recently developed metrics of doi:10.1371/journal.pone.0140162 niche overlap to compare habitat suitability models of three genetic clades. The predicted Editor: Diego Fontaneto, Consiglio Nazionale delle distributions range from 55°N to 44°S and are restricted to regions of intermediate to warm Ricerche (CNR), ITALY sea surface temperatures.