(Sargocentron Spiniferum) from the Southern Red Sea: Difference Between Right and Left Otoliths
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Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Ecography ECOG-01937 Hattab, T., Leprieur, F., Ben Rais Lasram, F., Gravel, D., Le Loc’H, F
Ecography ECOG-01937 Hattab, T., Leprieur, F., Ben Rais Lasram, F., Gravel, D., Le Loc’h, F. and Albouy, C. 2016. Forecasting fine- scale changes in the food-web structure of coastal marine communities under climate change. – Ecography doi: 10.1111/ecog.01937 Supplementary material Forecasting fine-scale changes in the food-web structure of coastal marine communities under climate change by Hattab et al. Appendix 1 List of coastal exploited marine species considered in this study Species Genus Order Family Class Trophic guild Auxis rochei rochei (Risso, 1810) Auxis Perciformes Scombridae Actinopterygii Top predators Balistes capriscus Gmelin, 1789 Balistes Tetraodontiformes Balistidae Actinopterygii Macro-carnivorous Boops boops (Linnaeus, 1758) Boops Perciformes Sparidae Actinopterygii Basal species Carcharhinus plumbeus (Nardo, 1827) Carcharhinus Carcharhiniformes Carcharhinidae Elasmobranchii Top predators Dasyatis pastinaca (Linnaeus, 1758) Dasyatis Rajiformes Dasyatidae Elasmobranchii Top predators Dentex dentex (Linnaeus, 1758) Dentex Perciformes Sparidae Actinopterygii Macro-carnivorous Dentex maroccanus Valenciennes, 1830 Dentex Perciformes Sparidae Actinopterygii Macro-carnivorous Diplodus annularis (Linnaeus, 1758) Diplodus Perciformes Sparidae Actinopterygii Forage species Diplodus sargus sargus (Linnaeus, 1758) Diplodus Perciformes Sparidae Actinopterygii Macro-carnivorous (Geoffroy Saint- Diplodus vulgaris Hilaire, 1817) Diplodus Perciformes Sparidae Actinopterygii Basal species Engraulis encrasicolus (Linnaeus, 1758) Engraulis -
Recent Data of Maximum Age and Length of Painted Comber Serranus Scriba (Linnaeus, 1758) in Mediterranean Sea
ISSN: 0001-5113 ACTA ADRIAT., UDC: 594.1 (497.5) (262.3) AADRAY 51(2): 223 - 226, 2010 Recent data of maximum age and length of painted comber Serranus scriba (Linnaeus, 1758) in Mediterranean Sea Barbara ZORICA*, Armin PALLAORO, Gorenka SINOVČIĆ and Vanja ČIKEŠ KEČ Institute of Oceanography and Fisheries, P.O. Box 500, 21 000 Split, Croatia *Corresponding author, e-mail: [email protected] The present study was undertaken not only to register the new recently noticed maximum age and total length of Serranus scriba (Linnaeus, 1758), contributing to the knowledge of this species in the Mediterranean and Adriatic Sea inclusively. A painted comber specimen of 323 mm of total length and age 16 years was caught during August 2008 in the Lavdra Channel (middle-eastern Adriatic Sea). Key words: Serranus scriba, Serranidae, maximum length, maximum age, Adriatic Sea, Mediterranean INTRODUCTION (43º55’N and 15º13’E) by a fishhook at a depth of 3.5 m. All lengths of the specimen were In fisheries science, theoretical parameters measured up to the nearest 0.1 cm and weighed such as maximum length, weight and age are with an electric balance to the nearest 0.1 g. The very important as they directly and indirectly sagittal otolith was removed by opening the otic enter into most of the models used in stock bulla under the operculum, washed in freshwa- assessments (BORGES, 2001). Thereupon, updat- ter and stored in plastic tube prior to ageing. ing the maximum size of a species that might The fish was dissected for determination of become commercially exploited is significant. -
Identification Guide to the Common Coatal Food Fishes of the Pacific Region-48-53
YDX Myripristis adusta Holocentridae / Soldierfish and Squirrelfish Shadowfin soldierfish Silvery-salmon pink with 1 dark 3 1 scale margins, particularly on upper body. 2 Reddish-black spot on rear margin of gill covers and 3 reddish-black margins on soft dorsal, anal and caudal fins. Max length: 30 cm FL AS CK FJ FM GU KI 2 MH MP NC NR NU PF PG PN PW SB TK TO TV VU WF WS YDX Myripristis amaena Holocentridae / Soldierfish and Squirrelfish Brick soldierfish Silvery-red with 1 dark scale 1 margins and 2 dark red band on margin of gill covers. 3 Dorsal, anal and caudal fins red without white margins. Max length: 27 cm FL AS CK FJ FM GU KI MH MP NC NR NU PF 2 3 PG PN PW SB TK TO TV VU WF WS Similar to Myripristis violacea but without white margins on soft dorsal, anal and caudal fins. YJW Myripristis berndti Holocentridae / Soldierfish and Squirrelfish Blotcheye soldierfish, bigscale soldierfish 4 White with red tints and 1 red 1 scale margins. 2 Dark margin on gill covers and 3 white margins on soft dorsal, pelvic, anal and caudal fins.4 Outer part of spiny dorsal fin orange-yellow. Max length: 28 cm FL AS CK FJ FM GU KI 2 MH MP NC NR NU PF PG PN PW SB TK TO 3 TV VU WF WS Similar to Myripristis kuntee but with much larger scales and a redder overall appearance. 48 Holocentridae / Soldierfish and Squirrelfish Myripristis kuntee YJZ Shoulderbar soldierfish 2 Silvery orange-red with 1 darker scale margins. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Reproductive Period and Histological Analysis of the Painted Comber, Serranus Scriba (Linnaeus, 1758), in the Trogir Bay Area (Eastern Mid-Adriatic)
ISSN: 0001-5113 ACTA ADRIAT., UDC: 597.582.2 591.16:597.582.2(497.5 Trogir)(262.3) AADRAY 46 (1): 77 - 82, 2005 Original scientific paper Reproductive period and histological analysis of the painted comber, Serranus scriba (Linnaeus, 1758), in the Trogir Bay area (eastern mid-Adriatic) Barbara ZORICA, Gorenka SINOVČIĆ and Vanja ČIKEŠ KEČ Institute of Oceanography and Fisheries, P.O. Box 500, 21 000 Split, Croatia A total of 798 specimens of the painted comber, Serranus scriba (Linnaeus, 1758), were caught in Trogir Bay (eastern mid-Adriatic) from June 2001 to May 2002 and analyzed. Total length ranged 7.1-20.0 cm (mean 11.0±1.7 cm); body weight ranged 4.21-108.99 g (mean 18.59±10.248 g). Histological analysis of 242 specimens confirmed simultaneous hermaphroditism. The annual variation of gonadosomatic index indicates that S. scriba spawns from May to August. Descriptions based on microscopic examinations of ovarian and testicular tissues are given. Key words: Serranus scriba, simultaneous hermaphrodite, spawning season INTRODUCTION throughout the year, especially during the spring and summer. Fishing takes place early in the The painted comber, Serranus scriba morning. (Linnaeus, 1758), is a subtropical species, abundant The purposes of this study were to in the eastern Atlantic from the Bay of Biscay to acquire knowledge on gonad maturation using Mauritania (MAIGRET & LY, 1986), including the macroscopic and histological examination and Canary, Azores and Madeira Islands, and in the to determine the reproductive period of the Mediterranean and Black Sea (BAUCHOT, 1987). painted comber in the Adriatic Sea. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Short-Term Residence, Home Range Size and Diel Patterns of the Painted Comber Serranus Scriba in a Temperate Marine Reserve
Vol. 400: 195–206, 2010 MARINE ECOLOGY PROGRESS SERIES Published February 11 doi: 10.3354/meps08410 Mar Ecol Prog Ser Short-term residence, home range size and diel patterns of the painted comber Serranus scriba in a temperate marine reserve D. March1,*, M. Palmer1, J. Alós1, A. Grau2, F. Cardona1 1Instituto Mediterráneo de Estudios Avanzados, IMEDEA (UIB-CSIC), Miquel Marqués 21, 07190 Esporles, Islas Baleares, Spain 2Laboratori d’Investigacions Marines i Aqüicultura, LIMIA, Eng. Gabriel Roca 69, 07157 Port d’Andratx, Islas Baleares, Spain ABSTRACT: We examined the short-term movements of a small temperate fish, the painted comber Serranus scriba (Linnaeus 1758), within the marine protected area (MPA) of Palma Bay (NW Mediter- ranean) using passive acoustic telemetry. Fifteen adults were surgically implanted with acoustic transmitters and monitored between July 2007 and February 2008 for periods of up to 36 d. Inter- individual variability was detected for both spatial and temporal patterns. There were 2 principal movement behaviours that were recorded, with some individuals showing high site fidelity and others showing a more mobile behaviour, moving out from the monitoring area. Observation-area curves indicated that a period between 3 and 5 d was required to determine home ranges of the sedentary fish. Home range sizes were small, with a minimum shift of core areas occurring on a daily basis. Total minimum convex polygon (MCP) areas ranged between 0.102 and 0.671 km2, whereas 95% kernel utilization distributions (KUD) ranged between 0.760 and 1.333 km2. Core areas (50% KUD) ranged between 0.175 and 0.294 km2. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Highly Diversified Late Cretaceous Fish Assemblage Revealed by Otoliths (Ripley Formation and Owl Creek Formation, Northeast Mississippi, Usa)
Rivista Italiana di Paleontologia e Stratigrafia (Research in Paleontology and Stratigraphy) vol. 126(1): 111-155. March 2020 HIGHLY DIVERSIFIED LATE CRETACEOUS FISH ASSEMBLAGE REVEALED BY OTOLITHS (RIPLEY FORMATION AND OWL CREEK FORMATION, NORTHEAST MISSISSIPPI, USA) GARY L. STRINGER1, WERNER SCHWARZHANS*2 , GEORGE PHILLIPS3 & ROGER LAMBERT4 1Museum of Natural History, University of Louisiana at Monroe, Monroe, Louisiana 71209, USA. E-mail: [email protected] 2Natural History Museum of Denmark, Zoological Museum, Universitetsparken 15, DK-2100, Copenhagen, Denmark. E-mail: [email protected] 3Mississippi Museum of Natural Science, 2148 Riverside Drive, Jackson, Mississippi 39202, USA. E-mail: [email protected] 4North Mississippi Gem and Mineral Society, 1817 CR 700, Corinth, Mississippi, 38834, USA. E-mail: [email protected] *Corresponding author To cite this article: Stringer G.L., Schwarzhans W., Phillips G. & Lambert R. (2020) - Highly diversified Late Cretaceous fish assemblage revealed by otoliths (Ripley Formation and Owl Creek Formation, Northeast Mississippi, USA). Riv. It. Paleontol. Strat., 126(1): 111-155. Keywords: Beryciformes; Holocentriformes; Aulopiformes; otolith; evolutionary implications; paleoecology. Abstract. Bulk sampling and extensive, systematic surface collecting of the Coon Creek Member of the Ripley Formation (early Maastrichtian) at the Blue Springs locality and primarily bulk sampling of the Owl Creek Formation (late Maastrichtian) at the Owl Creek type locality, both in northeast Mississippi, USA, have produced the largest and most highly diversified actinopterygian otolith (ear stone) assemblage described from the Mesozoic of North America. The 3,802 otoliths represent 30 taxa of bony fishes representing at least 22 families. In addition, there were two different morphological types of lapilli, which were not identifiable to species level. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
Factors Influencing Community Structure of Riverine
FACTORS INFLUENCING COMMUNITY STRUCTURE OF RIVERINE ORGANISMS: IMPLICATIONS FOR IMPERILED SPECIES MANAGEMENT by David S. Ruppel, M.S. A dissertation submitted to the Graduate Council of Texas State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy with a Major in Aquatic Resources and Integrative Biology May 2019 Committee Members: Timothy H. Bonner, Chair Noland H. Martin Joseph A. Veech Kenneth G. Ostrand James A. Stoeckel COPYRIGHT by David S. Ruppel 2019 FAIR USE AND AUTHOR’S PERMISSION STATEMENT Fair Use This work is protected by the Copyright Laws of the United States (Public Law 94-553, section 107). Consistent with fair use as defined in the Copyright Laws, brief quotations from this material are allowed with proper acknowledgement. Use of this material for financial gain without the author’s express written permission is not allowed. Duplication Permission As the copyright holder of this work I, David S. Ruppel, authorize duplication of this work, in whole or in part, for educational or scholarly purposes only. ACKNOWLEDGEMENTS First, I thank my major advisor, Timothy H. Bonner, who has been a great mentor throughout my time at Texas State University. He has passed along his vast knowledge and has provided exceptional professional guidance and support with will benefit me immensely as I continue to pursue an academic career. I also thank my committee members Dr. Noland H. Martin, Dr. Joseph A. Veech, Dr. Kenneth G. Ostrand, and Dr. James A. Stoeckel who provided great comments on my dissertation and have helped in shaping manuscripts that will be produced in the future from each one of my chapters.