Delineations of Forest Fungi: Morphology and Relationships of Vararia
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Phylogeny, Morphology, and Ecology Resurrect Previously Synonymized Species of North American Stereum Sarah G
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.16.342840; this version posted October 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny, morphology, and ecology resurrect previously synonymized species of North American Stereum Sarah G. Delong-Duhon and Robin K. Bagley Department of Biology, University of Iowa, Iowa City, IA 52242 [email protected] Abstract Stereum is a globally widespread genus of basidiomycete fungi with conspicuous shelf-like fruiting bodies. Several species have been extensively studied due to their economic importance, but broader Stereum taxonomy has been stymied by pervasive morphological crypsis in the genus. Here, we provide a preliminary investigation into species boundaries among some North American Stereum. The nominal species Stereum ostrea has been referenced in field guides, textbooks, and scientific papers as a common fungus with a wide geographic range and even wider morphological variability. We use ITS sequence data of specimens from midwestern and eastern North America, alongside morphological and ecological characters, to show that Stereum ostrea is a complex of at least three reproductively isolated species. Preliminary morphological analyses show that these three species correspond to three historical taxa that were previously synonymized with S. ostrea: Stereum fasciatum, Stereum lobatum, and Stereum subtomentosum. Stereum hirsutum ITS sequences taken from GenBank suggest that other Stereum species may actually be species complexes. Future work should apply a multilocus approach and global sampling strategy to better resolve the taxonomy and evolutionary history of this important fungal genus. -
Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Biodiversity of Wood-Decay Fungi in Italy
AperTO - Archivio Istituzionale Open Access dell'Università di Torino Biodiversity of wood-decay fungi in Italy This is the author's manuscript Original Citation: Availability: This version is available http://hdl.handle.net/2318/88396 since 2016-10-06T16:54:39Z Published version: DOI:10.1080/11263504.2011.633114 Terms of use: Open Access Anyone can freely access the full text of works made available as "Open Access". Works made available under a Creative Commons license can be used according to the terms and conditions of said license. Use of all other works requires consent of the right holder (author or publisher) if not exempted from copyright protection by the applicable law. (Article begins on next page) 28 September 2021 This is the author's final version of the contribution published as: A. Saitta; A. Bernicchia; S.P. Gorjón; E. Altobelli; V.M. Granito; C. Losi; D. Lunghini; O. Maggi; G. Medardi; F. Padovan; L. Pecoraro; A. Vizzini; A.M. Persiani. Biodiversity of wood-decay fungi in Italy. PLANT BIOSYSTEMS. 145(4) pp: 958-968. DOI: 10.1080/11263504.2011.633114 The publisher's version is available at: http://www.tandfonline.com/doi/abs/10.1080/11263504.2011.633114 When citing, please refer to the published version. Link to this full text: http://hdl.handle.net/2318/88396 This full text was downloaded from iris - AperTO: https://iris.unito.it/ iris - AperTO University of Turin’s Institutional Research Information System and Open Access Institutional Repository Biodiversity of wood-decay fungi in Italy A. Saitta , A. Bernicchia , S. P. Gorjón , E. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Septal Pore Caps in Basidiomycetes Composition and Ultrastructure
Septal Pore Caps in Basidiomycetes Composition and Ultrastructure Septal Pore Caps in Basidiomycetes Composition and Ultrastructure Septumporie-kappen in Basidiomyceten Samenstelling en Ultrastructuur (met een samenvatting in het Nederlands) Proefschrift ter verkrijging van de graad van doctor aan de Universiteit Utrecht op gezag van de rector magnificus, prof.dr. J.C. Stoof, ingevolge het besluit van het college voor promoties in het openbaar te verdedigen op maandag 17 december 2007 des middags te 16.15 uur door Kenneth Gregory Anthony van Driel geboren op 31 oktober 1975 te Terneuzen Promotoren: Prof. dr. A.J. Verkleij Prof. dr. H.A.B. Wösten Co-promotoren: Dr. T. Boekhout Dr. W.H. Müller voor mijn ouders Cover design by Danny Nooren. Scanning electron micrographs of septal pore caps of Rhizoctonia solani made by Wally Müller. Printed at Ponsen & Looijen b.v., Wageningen, The Netherlands. ISBN 978-90-6464-191-6 CONTENTS Chapter 1 General Introduction 9 Chapter 2 Septal Pore Complex Morphology in the Agaricomycotina 27 (Basidiomycota) with Emphasis on the Cantharellales and Hymenochaetales Chapter 3 Laser Microdissection of Fungal Septa as Visualized by 63 Scanning Electron Microscopy Chapter 4 Enrichment of Perforate Septal Pore Caps from the 79 Basidiomycetous Fungus Rhizoctonia solani by Combined Use of French Press, Isopycnic Centrifugation, and Triton X-100 Chapter 5 SPC18, a Novel Septal Pore Cap Protein of Rhizoctonia 95 solani Residing in Septal Pore Caps and Pore-plugs Chapter 6 Summary and General Discussion 113 Samenvatting 123 Nawoord 129 List of Publications 131 Curriculum vitae 133 Chapter 1 General Introduction Kenneth G.A. van Driel*, Arend F. -
Notes on Lopharia Mirabilis (Berk. & Broome) Pat. in China
Fung. Sci. 17(1, 2): 31–38, 2002 Notes on Lopharia mirabilis (Berk. & Broome) Pat. in China Yu-Cheng Dai* Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China (Accepted May 2, 2002) ABSTRACT Lopharia mirabilis was re-collected from Northeast and Southwest China. The species was poorly known in China, and it was earlier known as Licentia yaochanica from Shanxi Province only. Its emended description is given based on the new collections and previous material. Specimens of the species from China, India, Ja- pan and Thailand are studied. The fungus is characterized by resupinate basidiocarps, irregularly poroid to irpicoid and partly labyrinthine hymenophore, dimitic hyphal system, dextrinoid and cyanophilous skeletal hyphae, prominent and distinctly amyloid cystidia, and ellipsoid basidiospores. The relationships between Lopharia and related genera are discussed. Key words: Basidiomycota, China, Lopharia mirabilis, taxonomy, wood-inhabiting fungi. Introduction and illustrations are presented here based on the type specimen of Licentia yaochanica, re- Lopharia mirabilis (Berk. & Broome) Pat. cent collections from China, and many other was re-collected from the temperate forest of specimens from India, Japan and Thailand. In Northeast China and subtropical forest of addition, specimens of Lopharia cinerascens Southwest China. The species was first re- from Kenya, Australia and New Zealand are ported in China as Licentia yaochanica Pilát studied, and relationships between Lopharia (Pilát, 1940). Over the past 60 years it has mirabilis and L. cinerascens are discussed. been cited by Tai (1979), but otherwise has remained almost forgotten in China. Boidin Materials and Methods (1960) treated Licentia as a synonym of Lo- pharia Kalch. -
Basidiomycota)
Mycol Progress DOI 10.1007/s11557-016-1210-z ORIGINAL ARTICLE Leifiporia rhizomorpha gen. et sp. nov. and L. eucalypti comb. nov. in Polyporaceae (Basidiomycota) Chang-Lin Zhao1 & Fang Wu1 & Yu-Cheng Dai1 Received: 21 March 2016 /Revised: 10 June 2016 /Accepted: 14 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract A new poroid wood-inhabiting fungal genus, Keywords Phylogenetic analysis . Polypores . Taxonomy . Leifiporia, is proposed, based on morphological and molecular Wood-rotting fungi evidence, which is typified by L. rhizomorpha sp. nov. The genus is characterized by an annual growth habit, resupinate basidiocarps with white to cream pore surface, a dimitic hyphal Introduction system with generative hyphae bearing clamp connections and branching mostly at right angles, skeletal hyphae present in the Polypores are a very important group of wood-inhabiting fungi subiculum only and distinctly thinner than generative hyphae, which have been extensively studied Among them, the IKI–,CB–, and ellipsoid, hyaline, thin-walled, smooth, IKI–, Polyporaceae is a diverse group of Polyporales, including spe- CB– basidiospores. Sequences of ITS and LSU nrRNA gene cies having annual to perennial, resupinate, pileate and stipitate regions of the studied samples were generated, and phyloge- basidiocarps, a monomitic to dimitic or trimitic hyphal structure netic analyses were performed with maximum likelihood, max- with simple septa or clamp connections on generative hyphae, imum parsimony and Bayesian inference methods. The phylo- and thin- to thick-walled, smooth to ornamented, cyanophilous genetic analysis based on molecular data of ITS + nLSU se- to acyanophilous basidiospores (Ryvarden and Johansen 1980; quences showed that Leifiporia belonged to the core Gilbertson and Ryvarden 1986, 1987;Dai2012; Ryvarden and polyporoid clade and was closely related to Diplomitoporus Melo 2014). -
Outgrowths Acanthophyses Acanthohyphidia, Finger-Like
PERSOONIA Published by the Rijksherbarium, Leiden Volume Part 311-324 10, 3, pp. (1979) Stereums with acanthophyses, their position and affinities J. Boidin E. Parmasto G.S. Dhingra & P. Lanquentin Stereum peculiare spec. nov. and S. reflexulum Reid are described. Two new subgenera are distinguishedin the genus Stereum: subg. Aculeatostereum and subg. Acanthostereum. The authors compare them with other genera having acan- thophyses. The Stereum S. F. emend. Boid. genus Gray 1958 is restricted to species having smooth, it amyloid, and binucleatespores, dimiticbasidiocarps without clamps and with pseudocystidia; is also characterized by a holocenocytic nuclear behaviour with sparse, opposite or verticillate clamps on the bigger hyphae of mono- and polysporous cultures. In — this genus, Bourdot & Galzin (1921) distinguished two sections section Luteola which contains the type species and section Cruentatafor the species which redden upon injury. The distinction between the species is based on external appearance, while microscopic characteris- tics are rarely used because they display little variation. Asfar back as 1960 Boidin(p. 67, note 6) proposed the term 'pseudoacanthophyses' for those sterile,aculeolateelements which replace the basidioles, have thé same size but bear a few short outgrowths at their apex. True acanthophyses or acanthohyphidia, called 'bottle-brush Burt with paraphyses' by (1920), are more differentiated, many apparently massive, cylindrical, the finger-like elements, covering top and, more or less, the sides. These elements can be observed in Aleurodiscus many species of subg. Aleurodiscus and subg. Acanthophysium Pilat 1926 and with of a more regular shape, in all members Aleurodiscus subg. Aleurobolus Boid. & al.(1968), as well as in the genus Xylobolus and, as we will see, in various species ofStereum sensu stricto such as Stereumpeculiare, and S. -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
Acta Botanica Brasilica - 31(4): 566-570
Acta Botanica Brasilica - 31(4): 566-570. October-December 2017. doi: 10.1590/0102-33062017abb0130 Host-exclusivity and host-recurrence by wood decay fungi (Basidiomycota - Agaricomycetes) in Brazilian mangroves Georgea S. Nogueira-Melo1*, Paulo J. P. Santos 2 and Tatiana B. Gibertoni1 Received: April 7, 2017 Accepted: May 9, 2017 . ABSTRACT Th is study aimed to investigate for the fi rst time the ecological interactions between species of Agaricomycetes and their host plants in Brazilian mangroves. Th irty-two fi eld trips were undertaken to four mangroves in the state of Pernambuco, Brazil, from April 2009 to March 2010. One 250 x 40 m stand was delimited in each mangrove and six categories of substrates were artifi cially established: living Avicennia schaueriana (LA), dead A. schaueriana (DA), living Rhizophora mangle (LR), dead R. mangle (DR), living Laguncularia racemosa (LL) and dead L. racemosa (DL). Th irty-three species of Agaricomycetes were collected, 13 of which had more than fi ve reports and so were used in statistical analyses. Twelve species showed signifi cant values for fungal-plant interaction: one of them was host- exclusive in DR, while fi ve were host-recurrent on A. schauerianna; six occurred more in dead substrates, regardless the host species. Overall, the results were as expected for environments with low plant species richness, and where specifi city, exclusivity and/or recurrence are more easily seen. However, to properly evaluate these relationships, mangrove ecosystems cannot be considered homogeneous since they can possess diff erent plant communities, and thus diff erent types of fungal-plant interactions. Keywords: Fungi, estuaries, host-fungi interaction, host-relationships, plant-fungi interaction Hyde (2001) proposed a redefi nition of these terms. -
A New Morphological Arrangement of the Polyporales. I
A new morphological arrangement of the Polyporales. I. Phanerochaetineae © Ivan V. Zmitrovich, Vera F. Malysheva,* Wjacheslav A. Spirin** V.L. Komarov Botanical Institute RAS, Prof. Popov str. 2, 197376, St-Petersburg, Russia e-mail: [email protected], *[email protected], **[email protected] Zmitrovich I.V., Malysheva V.F., Spirin W.A. A new morphological arrangement of the Polypo- rales. I. Phanerochaetineae. Mycena. 2006. Vol. 6. P. 4–56. UDC 582.287.23:001.4. SUMMARY: A new taxonomic division of the suborder Phanerochaetineae of the order Polyporales is presented. The suborder covers five families, i.e. Faerberiaceae Pouzar, Fistuli- naceae Lotsy (including Jülich’s Bjerkanderaceae, Grifolaceae, Hapalopilaceae, and Meripi- laceae), Laetiporaceae Jülich (=Phaeolaceae Jülich), and Phanerochaetaceae Jülich. As a basis of the suggested subdivision, features of basidioma micromorphology are regarded, with special attention to hypha/epibasidium ratio. Some generic concepts are changed. New genera Raduliporus Spirin & Zmitr. (type Polyporus aneirinus Sommerf. : Fr.), Emmia Zmitr., Spirin & V. Malysheva (type Polyporus latemarginatus Dur. & Mont.), and Leptochaete Zmitr. & Spirin (type Thelephora sanguinea Fr. : Fr.) are described. The genus Byssomerulius Parmasto is proposed to be conserved versus Dictyonema C. Ag. The genera Abortiporus Murrill and Bjer- kandera P. Karst. are reduced to Grifola Gray. In total, 69 new combinations are proposed. The species Emmia metamorphosa (Fuckel) Spirin, Zmitr. & Malysheva (commonly known as Ceri- poria metamorphosa (Fuckel) Ryvarden & Gilb.) is reported as new to Russia. Key words: aphyllophoroid fungi, corticioid fungi, Dictyonema, Fistulinaceae, homo- basidiomycetes, Laetiporaceae, merulioid fungi, Phanerochaetaceae, phylogeny, systematics I. INTRODUCTORY NOTES There is no general agreement how to outline the limits of the forms which should be called phanerochaetoid fungi. -
A New <I>Asterostroma</I> Species (<I>Basidiomycota</I>) from a Subtropical Region in Japan
ISSN (print) 0093-4666 © 2010. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON doi: 10.5248/114.197 Volume 114, pp. 197–203 October–December 2010 A new Asterostroma species (Basidiomycota) from a subtropical region in Japan Hiroto Suhara1*, Nitaro Maekawa1 & Shuji Ushijima2 [email protected] & [email protected] 1Faculty of Agriculture, Tottori University 4-101 Koyama-Minami, Tottori, 680-8553, Japan [email protected] The United Graduate School of Agricultural Science, Tottori University 4-101 Koyama-Minami, Tottori, 680-8553, Japan Abstract — A new homobasidiomycete, Asterostroma boninense, was found in the Bonin (Ogasawara) Islands, a subtropical region in Japan. This species is morphologically characterized by having resupinate basidiomata, a monomitic (asterodimitic) hyphal system, simple septate generative hyphae, dextrinoid asterosetae, four sterigmate basidia, and subglobose, tuberculate, amyloid basidiospores. It is similar to A. muscicola, but the latter has smaller basidia. In Japan, A. muscicola is widely distributed in warm-temperate to subtropical regions including the Bonin Islands, while A. boninense is restricted to the Bonin Islands. Another species in the genus, Asterostroma andinum, is also reported as new to Japan. A key to the Japanese species of Asterostroma is provided. Key words — corticioid fungi, Lachnocladiaceae, oceanic island, taxonomy Introduction The genus Asterostroma Massee belonging to the family Lachnocladiaceae (Basidiomycota) is characterized by resupinate and felted-membranous basidiomata, gloeocystidia, clampless generative hyphae, and dextrinoid asterosetae (asterohyphidia). Based on basidiospore morphology, the genus is divided into two subgenera, Austroasterostroma Parmasto and Asterostroma. The former produces smooth and inamyloid basidiospores whereas species of the latter have amyloid spores (Parmasto 1970).