Cells 2014, 3, 563-591; doi:10.3390/cells3020563 OPEN ACCESS cells ISSN 2073-4409 www.mdpi.com/journal/cells Article Systems Analysis of Drug-Induced Receptor Tyrosine Kinase Reprogramming Following Targeted Mono- and Combination Anti-Cancer Therapy Alexey Goltsov 1,*, Yusuf Deeni 1, Hilal S. Khalil 1, Tero Soininen 1, Stylianos Kyriakidis 2, Huizhong Hu 3, Simon P. Langdon 4, David J. Harrison 5 and James Bown 1 1 Scottish Informatics, Mathematics, Biology and Statistics Centre (SIMBIOS), Abertay University, Dundee, DD1 1HG, United Kingdom; E-Mails:
[email protected] (Y.D.);
[email protected] (H.S.K.);
[email protected] (T.S.);
[email protected] (J.B.) 2 The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, United Kingdom; E-Mail:
[email protected] 3 Lester and Sue Smith Breast Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA; E-Mail:
[email protected] 4 Division of Pathology, Institute of Genetics and Molecular Medicine, University of Edinburgh, Western General Hospital, Edinburgh, EH4 2XU, United Kingdom; E-Mail:
[email protected] 5 School of Medicine, University of St Andrews, St Andrews, KY16 9TF, United Kingdom; E-Mail:
[email protected] * Author to whom correspondence should be addressed; E-Mail:
[email protected]; Tel.: +44-138-308-432. Received: 31 March 2014; in revised form: 14 May 2014 / Accepted: 19 May 2014 / Published: 10 June 2014 Abstract: The receptor tyrosine kinases (RTKs) are key drivers of cancer progression and targets for drug therapy. A major challenge in anti-RTK treatment is the dependence of drug effectiveness on co-expression of multiple RTKs which defines resistance to single drug therapy.