First Results Obtained Using TEM and CLSM. Part I: Tantulus Larva
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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Zootaxa,Crustacean Classification
Zootaxa 1668: 313–325 (2007) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2007 · Magnolia Press ISSN 1175-5334 (online edition) Crustacean classification: on-going controversies and unresolved problems* GEOFF A. BOXSHALL Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom E-mail: [email protected] *In: Zhang, Z.-Q. & Shear, W.A. (Eds) (2007) Linnaeus Tercentenary: Progress in Invertebrate Taxonomy. Zootaxa, 1668, 1–766. Table of contents Abstract . 313 Introduction . 313 Treatment of parasitic Crustacea . 315 Affinities of the Remipedia . 316 Validity of the Entomostraca . 318 Exopodites and epipodites . 319 Using of larval characters in estimating phylogenetic relationships . 320 Fossils and the crustacean stem lineage . 321 Acknowledgements . 322 References . 322 Abstract The journey from Linnaeus’s original treatment to modern crustacean systematics is briefly characterised. Progress in our understanding of phylogenetic relationships within the Crustacea is linked to continuing discoveries of new taxa, to advances in theory and to improvements in methodology. Six themes are discussed that serve to illustrate some of the major on-going controversies and unresolved problems in the field as well as to illustrate changes that have taken place since the time of Linnaeus. These themes are: 1. the treatment of parasitic Crustacea, 2. the affinities of the Remipedia, 3. the validity of the Entomostraca, 4. exopodites and epipodites, 5. using larval characters in estimating phylogenetic rela- tionships, and 6. fossils and the crustacean stem-lineage. It is concluded that the development of the stem lineage concept for the Crustacea has been dominated by consideration of taxa known only from larval or immature stages. -
Crustaceans Topics in Biodiversity
Topics in Biodiversity The Encyclopedia of Life is an unprecedented effort to gather scientific knowledge about all life on earth- multimedia, information, facts, and more. Learn more at eol.org. Crustaceans Authors: Simone Nunes Brandão, Zoologisches Museum Hamburg Jen Hammock, National Museum of Natural History, Smithsonian Institution Frank Ferrari, National Museum of Natural History, Smithsonian Institution Photo credit: Blue Crab (Callinectes sapidus) by Jeremy Thorpe, Flickr: EOL Images. CC BY-NC-SA Defining the crustacean The Latin root, crustaceus, "having a crust or shell," really doesn’t entirely narrow it down to crustaceans. They belong to the phylum Arthropoda, as do insects, arachnids, and many other groups; all arthropods have hard exoskeletons or shells, segmented bodies, and jointed limbs. Crustaceans are usually distinguishable from the other arthropods in several important ways, chiefly: Biramous appendages. Most crustaceans have appendages or limbs that are split into two, usually segmented, branches. Both branches originate on the same proximal segment. Larvae. Early in development, most crustaceans go through a series of larval stages, the first being the nauplius larva, in which only a few limbs are present, near the front on the body; crustaceans add their more posterior limbs as they grow and develop further. The nauplius larva is unique to Crustacea. Eyes. The early larval stages of crustaceans have a single, simple, median eye composed of three similar, closely opposed parts. This larval eye, or “naupliar eye,” often disappears later in development, but on some crustaceans (e.g., the branchiopod Triops) it is retained even after the adult compound eyes have developed. In all copepod crustaceans, this larval eye is retained throughout their development as the 1 only eye, although the three similar parts may separate and each become associated with their own cuticular lens. -
2018 Bibliography of Taxonomic Literature
Bibliography of taxonomic literature for marine and brackish water Fauna and Flora of the North East Atlantic. Compiled by: Tim Worsfold Reviewed by: David Hall, NMBAQCS Project Manager Edited by: Myles O'Reilly, Contract Manager, SEPA Contact: [email protected] APEM Ltd. Date of Issue: February 2018 Bibliography of taxonomic literature 2017/18 (Year 24) 1. Introduction 3 1.1 References for introduction 5 2. Identification literature for benthic invertebrates (by taxonomic group) 5 2.1 General 5 2.2 Protozoa 7 2.3 Porifera 7 2.4 Cnidaria 8 2.5 Entoprocta 13 2.6 Platyhelminthes 13 2.7 Gnathostomulida 16 2.8 Nemertea 16 2.9 Rotifera 17 2.10 Gastrotricha 18 2.11 Nematoda 18 2.12 Kinorhyncha 19 2.13 Loricifera 20 2.14 Echiura 20 2.15 Sipuncula 20 2.16 Priapulida 21 2.17 Annelida 22 2.18 Arthropoda 76 2.19 Tardigrada 117 2.20 Mollusca 118 2.21 Brachiopoda 141 2.22 Cycliophora 141 2.23 Phoronida 141 2.24 Bryozoa 141 2.25 Chaetognatha 144 2.26 Echinodermata 144 2.27 Hemichordata 146 2.28 Chordata 146 3. Identification literature for fish 148 4. Identification literature for marine zooplankton 151 4.1 General 151 4.2 Protozoa 152 NMBAQC Scheme – Bibliography of taxonomic literature 2 4.3 Cnidaria 153 4.4 Ctenophora 156 4.5 Nemertea 156 4.6 Rotifera 156 4.7 Annelida 157 4.8 Arthropoda 157 4.9 Mollusca 167 4.10 Phoronida 169 4.11 Bryozoa 169 4.12 Chaetognatha 169 4.13 Echinodermata 169 4.14 Hemichordata 169 4.15 Chordata 169 5. -
The Tantulocaridan Life Cycle: the Circle Closed?
JOURNAL OF CRUSTACEAN BIOLOGY, 13(3): 432-442, 1993 THE TANTULOCARIDAN LIFE CYCLE: THE CIRCLE CLOSED? Rony Huys, Geoffrey A. Boxshall, and Roger J. Lincoln ABSTRACT The discovery of a new stage in the life cycle of the Tantulocarida is reported. A sexual female, collected from a deep-sea harpacticoid copepod host, was removed from the trunk sac of the preceding tantulus larva. This female is a free-living and nonfeeding stage which pre- sumably mates with the free-swimming adult male previously described. The female comprises a cephalothorax, probably incorporating 2 limbless thoracic somites, 2 free pedigerous trunk somites, and 3 limbless trunk somites. It also possesses paired antennules, the only well-defined cephalic appendages present at any stage in tantulocaridan life history. There is a median genital aperture, the copulatory pore, located ventrally on the cephalothorax at about the level of the incorporated first thoracic somite. This is interpreted as further evidence of a sister-group relationship between the Tantulocarida and the Thecostraca. The known life-cycle stages of the Tantulocarida are now interpreted as forming two cycles, one sexual, the other parthenogenetic. Tantulocaridans are minute ectoparasitic might exist, leading to a large, free-swim- crustaceans that utilize a variety of other ming adult which would be capable of mat- crustacean groups as hosts (Bcxshall and ing with the known adult male. Huys (1991) Lincoln, 1983). The known life cycle of the interpreted the significant variation in penis Tantulocarida, as described by Boxshall and structure in known male tantulocaridans Lincoln (1987), is remarkable for the com- (Huys, 1990) as evidence in support of the plete lack of any typical crustacean molting existence of a sexual female with comple- process. -
Fossil Calibrations for the Arthropod Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/044859; this version posted June 10, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. FOSSIL CALIBRATIONS FOR THE ARTHROPOD TREE OF LIFE AUTHORS Joanna M. Wolfe1*, Allison C. Daley2,3, David A. Legg3, Gregory D. Edgecombe4 1 Department of Earth, Atmospheric & Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 2 Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK 3 Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PZ, UK 4 Department of Earth Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK *Corresponding author: [email protected] ABSTRACT Fossil age data and molecular sequences are increasingly combined to establish a timescale for the Tree of Life. Arthropods, as the most species-rich and morphologically disparate animal phylum, have received substantial attention, particularly with regard to questions such as the timing of habitat shifts (e.g. terrestrialisation), genome evolution (e.g. gene family duplication and functional evolution), origins of novel characters and behaviours (e.g. wings and flight, venom, silk), biogeography, rate of diversification (e.g. Cambrian explosion, insect coevolution with angiosperms, evolution of crab body plans), and the evolution of arthropod microbiomes. We present herein a series of rigorously vetted calibration fossils for arthropod evolutionary history, taking into account recently published guidelines for best practice in fossil calibration. -
152, August 2009
PSAMMONALIA The Newsletter of the International Association of Meiobenthologists Number 152, August 2009 Composed and Printed at: Department of Zoology Federal University of Pernambuco Recife, PE, 50670-420 BRAZIL DON’T FORGET TO RENEW YOUR MEMBERSHIP IN IAM! THE APPLICATION CAN BE FOUND AT THE END OF THIS ISSUE OR AT: http://www.meiofauna.org/appform.html Don’t forget… Ghent - Belgium July 12-16, 2010 This Newsletter is not part of the scientific literature for taxonomic purposes. 1 The International Association of Meiobenthologists Executive Committee Paulo Santos Dept. of Zoology, Federal University of Pernambuco, Recife, Chairperson PE 50670-420 Brazil [[email protected]] Keith Walters Dept. of Marine Science, Coastal Carolina University, POB Past Chairperson 261954, Conway, SC 29528-6054 USA [[email protected]] Ann Vanreusel Lab Morphologie, Universiteit Gent, Ladengancjstraat 35, Treasurer B-9000 Gent, Belgium [[email protected]] Jyotsna Sharma Dept. of Biology, University of Texas at San Antonio, San Assistant Treasurer Antonio, TX 78249-0661, USA [[email protected]] Monika Bright Dept. of Marine Biology, University of Vienna, Vienna, A- (term expires 2013) 1090, Austria [[email protected]] Tom Moens Ghent University, Biology Department, Marine Biology (term expires 2013) Section, Gent, B-9000, Belgium [[email protected]] Kevin Carman Dept. of Biology, A103 Life Sciences, Louisiana State (term expires 2010) University, Baton Rouge LA 70803 USA [[email protected]] Emil Olafsson Menntun Consultoría, c/Cava Alta 9, 2ºC, Madrid 28005 (term expires 2010) Spain [[email protected]] Ex-Officio Executive Committee (Past Chairpersons) 1966-67 Robert Higgins 1984-86 Olav Giere Founding Editor 1968-69 W. -
Aquares Tools for Taxonomic Editors & External Users
AquaRES tools for taxonomic editors & external users Leen Vandepitte On behalf of the WoRMS DMT • Aquacache – tool for comparing taxonomic checklists • Improved data services in the framework of aquares – Taxon match services – Occurrence checking services – General quality control and data format checking services • Hands-on demo of data services • Data exchange and tools targeting internationalinitiatives AquaCache • From the project description: – we will design and build a central data cache linking the three databases FADA, WoR MS and RAMS. – This data cache will be hosted at VLIZ and is primarily meant to act as an internal system for running common web services in terms of taxon matching and data cleaning & refinement. – Each of the databases will retain its import, update mechanism and quality control. • In reality: – The goal of the AquaCache is to serve as an internal data management tool, helping the involved editors to search through and compare lists and identify possible overlaps and discrepancies between lists available in more than one species register, e.g. on the level of higher classification or the status of a name. – Lists can be uploaded into the AquaCache as Darwin Core Taxon files and need to include to Species Profile extension, indicating whether a taxon is marine, fresh, brackish or terrestrial. – The functionalities of the AquaCache will be broadened towards the future, depending on the needs of the involved editors. – After the AquaRES project (2013-2016), the AquaCache will continue under the LifeWatch project, where its functionalities and applications can be further developed. Work in progress… • AquaCache = management tool • Search & compare the involved systems (“search”) • Taxonomy: – Green: exact match (taxon name + higher classification) – Yellow: taxon match identifies inconsistencies between the names (e.g. -
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources
Southeastern Regional Taxonomic Center South Carolina Department of Natural Resources http://www.dnr.sc.gov/marine/sertc/ Southeastern Regional Taxonomic Center Invertebrate Literature Library (updated 9 May 2012, 4056 entries) (1958-1959). Proceedings of the salt marsh conference held at the Marine Institute of the University of Georgia, Apollo Island, Georgia March 25-28, 1958. Salt Marsh Conference, The Marine Institute, University of Georgia, Sapelo Island, Georgia, Marine Institute of the University of Georgia. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Caprellidea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1975). Phylum Arthropoda: Crustacea, Amphipoda: Gammaridea. Light's Manual: Intertidal Invertebrates of the Central California Coast. R. I. Smith and J. T. Carlton, University of California Press. (1981). Stomatopods. FAO species identification sheets for fishery purposes. Eastern Central Atlantic; fishing areas 34,47 (in part).Canada Funds-in Trust. Ottawa, Department of Fisheries and Oceans Canada, by arrangement with the Food and Agriculture Organization of the United Nations, vols. 1-7. W. Fischer, G. Bianchi and W. B. Scott. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume II. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. Volume III. Final report to the Minerals Management Service. J. M. Uebelacker and P. G. Johnson. Mobile, AL, Barry A. Vittor & Associates, Inc. (1984). Taxonomic guide to the polychaetes of the northern Gulf of Mexico. -
Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Larval Assemblages Over the Abyssal Plain in the Pacific Are Highly Diverse and Spatially Patchy
Larval assemblages over the abyssal plain in the Pacific are highly diverse and spatially patchy Oliver Kersten1,2, Eric W. Vetter1, Michelle J. Jungbluth1,3, Craig R. Smith3 and Erica Goetze3 1 Hawaii Pacific University, Kaneohe, HI, United States of America 2 Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway 3 Department of Oceanography, University of Hawaii at Manoa, Honolulu, HI, United States of America ABSTRACT Abyssal plains are among the most biodiverse yet least explored marine ecosystems on our planet, and they are increasingly threatened by human impacts, including future deep seafloor mining. Recovery of abyssal populations from the impacts of polymetallic nodule mining will be partially determined by the availability and dispersal of pelagic larvae leading to benthic recolonization of disturbed areas of the seafloor. Here we use a tree-of-life (TOL) metabarcoding approach to investigate the species richness, diversity, and spatial variability of the larval assemblage at mesoscales across the abyssal seafloor in two mining-claim areas in the eastern Clarion Clipperton Fracture Zone (CCZ; abyssal Pacific). Our approach revealed a previously unknown taxonomic richness within the meroplankton assemblage, detecting larvae from 12 phyla, 23 Classes, 46 Orders, and 65 Families, including a number of taxa not previously reported at abyssal depths or within the Pacific Ocean. A novel suite of parasitic copepods and worms were sampled, from families that are known to associate with other benthic invertebrates or demersal fishes as hosts. Larval assemblages were patchily distributed at the mesoscale, with little similarity in OTUs detected among deployments even within the same 30 × 30 km study area. -
Hymenoptera, Mymaridae)
JHR 32: 17–44A (2013)new genus and species of fairyfly,Tinkerbella nana (Hymenoptera, Mymaridae)... 17 doi: 10.3897/JHR.32.4663 RESEARCH ARTICLE www.pensoft.net/journals/jhr A new genus and species of fairyfly, Tinkerbella nana (Hymenoptera, Mymaridae), with comments on its sister genus Kikiki, and discussion on small size limits in arthropods John T. Huber1,†, John S. Noyes2,‡ 1 Natural Resources Canada, c/o Canadian National Collection of Insects, AAFC, K.W. Neatby building, 960 Carling Avenue, Ottawa, ON, K1A 0C6, Canada 2 Department of Entomology, Natural History Museum, Cromwell Road, South Kensington, London, SW7 5BD, UK † urn:lsid:zoobank.org:author:6BE7E99B-9297-437D-A14E-76FEF6011B10 ‡ urn:lsid:zoobank.org:author:6F8A9579-39BA-42B4-89BD-ED68B8F2EA9D Corresponding author: John T. Huber ([email protected]) Academic editor: S. Schmidt | Received 9 January 2013 | Accepted 11 March 2013 | Published 24 April 2013 urn:lsid:zoobank.org:pub:D481F356-0812-4E8A-B46D-E00F1D298444 Citation: Huber JH, Noyes JS (2013) A new genus and species of fairyfly, Tinkerbella nana (Hymenoptera, Mymaridae), with comments on its sister genus Kikiki, and discussion on small size limits in arthropods. Journal of Hymenoptera Research 32: 17–44. doi: 10.3897/JHR.32.4663 Abstract A new genus and species of fairyfly, Tinkerbella nana (Hymenoptera: Mymaridae) gen. n. and sp. n., is described from Costa Rica. It is compared with the related genus Kikiki Huber and Beardsley from the Hawaiian Islands, Costa Rica and Trinidad. A specimen of Kikiki huna Huber measured 158 μm long, thus holding the record for the smallest winged insect.