Crustaceans Topics in Biodiversity
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Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Stomatopoda of Greece: an Annotated Checklist
Biodiversity Data Journal 8: e47183 doi: 10.3897/BDJ.8.e47183 Taxonomic Paper Stomatopoda of Greece: an annotated checklist Panayota Koulouri‡, Vasilis Gerovasileiou‡§, Nicolas Bailly , Costas Dounas‡ ‡ Hellenic Center for Marine Recearch (HCMR), Heraklion, Greece § WorldFish Center, Los Baños, Philippines Corresponding author: Panayota Koulouri ([email protected]) Academic editor: Eva Chatzinikolaou Received: 09 Oct 2019 | Accepted: 15 Mar 2020 | Published: 26 Mar 2020 Citation: Koulouri P, Gerovasileiou V, Bailly N, Dounas C (2020) Stomatopoda of Greece: an annotated checklist. Biodiversity Data Journal 8: e47183. https://doi.org/10.3897/BDJ.8.e47183 Abstract Background The checklist of Stomatopoda of Greece was developed in the framework of the LifeWatchGreece Research Infrastructure (ESFRI) project, coordinated by the Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC) of the Hellenic Centre for Marine Research (HCMR). The application of the Greek Taxon Information System (GTIS) of this project has been used in order to develop a complete checklist of species recorded from the Greek Seas. The objectives of the present study were to update and cross-check all the stomatopod species that are known to occur in the Greek Seas. Inaccuracies and omissions were also investigated, according to literature and current taxonomic status. New information The up-to-date checklist of Stomatopoda of Greece comprises nine species, classified to eight genera and three families. Keywords Stomatopoda, Greece, Aegean Sea, Sea of Crete, Ionian Sea, Eastern Mediterranean, checklist © Koulouri P et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. -
Deep-Sea Mysidaceans (Crustacea: Lophogastrida and Mysida) from the North- Western North Pacifi C Off Japan, with Descriptions of Six New Species
Deep-sea Fauna and Pollutants off Pacifi c Coast of Northern Japan, edited by T. Fujita, National Museum of Nature and Science Monographs, No. 39, pp. 405-446, 2009 Deep-sea Mysidaceans (Crustacea: Lophogastrida and Mysida) from the North- western North Pacifi c off Japan, with Descriptions of Six New Species Kouki Fukuoka Ishigaki Tropical Station, Seikai National Fisheries Research Institute, Fisheries Research Agency, 148-446 Fukai-Ohta, Ishigaki, Okinawa, 907-0451 Japan E-mail: [email protected] Abstract: Mysidaceans (Lophogastrida and Mysida) from deep waters off the northern Japan are reported. Four species of Lophogastrida and 33 species of Mysida were identifi ed. A new genus, Neoamblyops, and six new species, Ceratomysis japonica, C. orientalis, Holmesiella bisaetigera, Mysimenzies borealis, Neoambly- ops latisquamatus, and Paramblyops hamatilis, are described. Key words: Crustacea, Lophogastrida, Mysida, deep water, northern Japan, new genus, new species. Introduction Mysidaceans (Lophogastrida and Mysida) from deep waters off the Pacifi c coast of the north- ern Honshu, Japan, have been reported by W. Tattersall (1951), Birstein and Tchindonova (1958), Taniguchi (1969), Murano (1975, 1976), Fukuoka et al. (2005), and Fukuoka and Murano (2006). To date, two species of Lophogastrida and 11 species of Mysida have been recorded (Table 1). The present paper provides the taxonomic result of mysidacean specimens collected from deep waters off the northern Japan during a research project entitled “Research on Deep-sea Fauna and Pollutants off Pacifi c Coast of Northern Japan” as part of the “Study on Deep-Sea Fauna and Conservation of the Deep-Sea Ecosystem” conducted by the National Museum of Nature and Sci- ence, Tokyo. -
Zootaxa,Crustacean Classification
Zootaxa 1668: 313–325 (2007) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2007 · Magnolia Press ISSN 1175-5334 (online edition) Crustacean classification: on-going controversies and unresolved problems* GEOFF A. BOXSHALL Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom E-mail: [email protected] *In: Zhang, Z.-Q. & Shear, W.A. (Eds) (2007) Linnaeus Tercentenary: Progress in Invertebrate Taxonomy. Zootaxa, 1668, 1–766. Table of contents Abstract . 313 Introduction . 313 Treatment of parasitic Crustacea . 315 Affinities of the Remipedia . 316 Validity of the Entomostraca . 318 Exopodites and epipodites . 319 Using of larval characters in estimating phylogenetic relationships . 320 Fossils and the crustacean stem lineage . 321 Acknowledgements . 322 References . 322 Abstract The journey from Linnaeus’s original treatment to modern crustacean systematics is briefly characterised. Progress in our understanding of phylogenetic relationships within the Crustacea is linked to continuing discoveries of new taxa, to advances in theory and to improvements in methodology. Six themes are discussed that serve to illustrate some of the major on-going controversies and unresolved problems in the field as well as to illustrate changes that have taken place since the time of Linnaeus. These themes are: 1. the treatment of parasitic Crustacea, 2. the affinities of the Remipedia, 3. the validity of the Entomostraca, 4. exopodites and epipodites, 5. using larval characters in estimating phylogenetic rela- tionships, and 6. fossils and the crustacean stem-lineage. It is concluded that the development of the stem lineage concept for the Crustacea has been dominated by consideration of taxa known only from larval or immature stages. -
University of Southampton Research Repository
University of Southampton Research Repository Copyright © and Moral Rights for this thesis and, where applicable, any accompanying data are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, with out prior permission or charge. This thesis and the accompanying data cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content of the thesis and accompanying research data (where applicable) must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holder/s. When referring to this thesis and any accompanying data, full bibliographic details must be given, e.g. Thesis: Author (Year of Submission) "Full thesis title", University of Southampton, name of the University Faculty or School or Department, PhD Thesis, pagination. Data: Author (Year) Title. URI [dataset] UNIVERSITY OF SOUTHAMPTON Faculty of Environmental and Life Science Ocean and Earth Science Antarctic krill recruitment in the south-west Atlantic sector of the Southern Ocean by Frances Anne Perry BSc (Bangor University) ORCID ID https://orcid.org/0000-0003-1560-1506 Thesis for the degree of Doctor of Philosophy November 2020 UNIVERSITY OF SOUTHAMPTON Abstract Faculty of Environmental and Life Science Ocean and Earth Science Thesis for the degree of Doctor of Philosophy ANTARCTIC KRILL RECRUITMENT IN THE SOUTH-WEST ATLANTIC SECTOR OF THE SOUTHERN OCEAN by Frances Anne Perry Antarctic krill are a key component of the Southern Ocean ecosystem and support a variety of predators as well as an expanding commercial fishery. -
Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Redalyc.Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae)
Revista de Biología Tropical ISSN: 0034-7744 [email protected] Universidad de Costa Rica Costa Rica Bunkley-Williams, Lucy; Williams, Jr., Ernest H.; Bashirullah, Abul K.M. Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae) associated with Venezuelan marine fishes (Elasmobranchii, Actinopterygii) Revista de Biología Tropical, vol. 54, núm. 3, diciembre, 2006, pp. 175-188 Universidad de Costa Rica San Pedro de Montes de Oca, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=44920193024 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Isopods (Isopoda: Aegidae, Cymothoidae, Gnathiidae) associated with Venezuelan marine fishes (Elasmobranchii, Actinopterygii) Lucy Bunkley-Williams,1 Ernest H. Williams, Jr.2 & Abul K.M. Bashirullah3 1 Caribbean Aquatic Animal Health Project, Department of Biology, University of Puerto Rico, P.O. Box 9012, Mayagüez, PR 00861, USA; [email protected] 2 Department of Marine Sciences, University of Puerto Rico, P.O. Box 908, Lajas, Puerto Rico 00667, USA; ewil- [email protected] 3 Instituto Oceanografico de Venezuela, Universidad de Oriente, Cumaná, Venezuela. Author for Correspondence: LBW, address as above. Telephone: 1 (787) 832-4040 x 3900 or 265-3837 (Administrative Office), x 3936, 3937 (Research Labs), x 3929 (Office); Fax: 1-787-834-3673; [email protected] Received 01-VI-2006. Corrected 02-X-2006. Accepted 13-X-2006. Abstract: The parasitic isopod fauna of fishes in the southern Caribbean is poorly known. In examinations of 12 639 specimens of 187 species of Venezuelan fishes, the authors found 10 species in three families of isopods (Gnathiids, Gnathia spp. -
Biochemical Divergence Between Cavernicolous and Marine
The position of crustaceans within Arthropoda - Evidence from nine molecular loci and morphology GONZALO GIRIBET', STEFAN RICHTER2, GREGORY D. EDGECOMBE3 & WARD C. WHEELER4 Department of Organismic and Evolutionary- Biology, Museum of Comparative Zoology; Harvard University, Cambridge, Massachusetts, U.S.A. ' Friedrich-Schiller-UniversitdtJena, Instituifiir Spezielte Zoologie und Evolutionsbiologie, Jena, Germany 3Australian Museum, Sydney, NSW, Australia Division of Invertebrate Zoology, American Museum of Natural History, New York, U.S.A. ABSTRACT The monophyly of Crustacea, relationships of crustaceans to other arthropods, and internal phylogeny of Crustacea are appraised via parsimony analysis in a total evidence frame work. Data include sequences from three nuclear ribosomal genes, four nuclear coding genes, and two mitochondrial genes, together with 352 characters from external morphol ogy, internal anatomy, development, and mitochondrial gene order. Subjecting the com bined data set to 20 different parameter sets for variable gap and transversion costs, crusta ceans group with hexapods in Tetraconata across nearly all explored parameter space, and are members of a monophyletic Mandibulata across much of the parameter space. Crustacea is non-monophyletic at low indel costs, but monophyly is favored at higher indel costs, at which morphology exerts a greater influence. The most stable higher-level crusta cean groupings are Malacostraca, Branchiopoda, Branchiura + Pentastomida, and an ostracod-cirripede group. For combined data, the Thoracopoda and Maxillopoda concepts are unsupported, and Entomostraca is only retrieved under parameter sets of low congruence. Most of the current disagreement over deep divisions in Arthropoda (e.g., Mandibulata versus Paradoxopoda or Cormogonida versus Chelicerata) can be viewed as uncertainty regarding the position of the root in the arthropod cladogram rather than as fundamental topological disagreement as supported in earlier studies (e.g., Schizoramia versus Mandibulata or Atelocerata versus Tetraconata). -
Lazare Botosaneanu ‘Naturalist’ 61 Doi: 10.3897/Subtbiol.10.4760
Subterranean Biology 10: 61-73, 2012 (2013) Lazare Botosaneanu ‘Naturalist’ 61 doi: 10.3897/subtbiol.10.4760 Lazare Botosaneanu ‘Naturalist’ 1927 – 2012 demic training shortly after the Second World War at the Faculty of Biology of the University of Bucharest, the same city where he was born and raised. At a young age he had already showed interest in Zoology. He wrote his first publication –about a new caddisfly species– at the age of 20. As Botosaneanu himself wanted to remark, the prominent Romanian zoologist and man of culture Constantin Motaş had great influence on him. A small portrait of Motaş was one of the few objects adorning his ascetic office in the Amsterdam Museum. Later on, the geneticist and evolutionary biologist Theodosius Dobzhansky and the evolutionary biologist Ernst Mayr greatly influenced his thinking. In 1956, he was appoint- ed as a senior researcher at the Institute of Speleology belonging to the Rumanian Academy of Sciences. Lazare Botosaneanu began his career as an entomologist, and in particular he studied Trichoptera. Until the end of his life he would remain studying this group of insects and most of his publications are dedicated to the Trichoptera and their environment. His colleague and friend Prof. Mar- cos Gonzalez, of University of Santiago de Compostella (Spain) recently described his contribution to Entomolo- gy in an obituary published in the Trichoptera newsletter2 Lazare Botosaneanu’s first contribution to the study of Subterranean Biology took place in 1954, when he co-authored with the Romanian carcinologist Adriana Damian-Georgescu a paper on animals discovered in the drinking water conduits of the city of Bucharest. -
Available Generic Names for Trilobites
AVAILABLE GENERIC NAMES FOR TRILOBITES P.A. JELL AND J.M. ADRAIN Jell, P.A. & Adrain, J.M. 30 8 2002: Available generic names for trilobites. Memoirs of the Queensland Museum 48(2): 331-553. Brisbane. ISSN0079-8835. Aconsolidated list of available generic names introduced since the beginning of the binomial nomenclature system for trilobites is presented for the first time. Each entry is accompanied by the author and date of availability, by the name of the type species, by a lithostratigraphic or biostratigraphic and geographic reference for the type species, by a family assignment and by an age indication of the type species at the Period level (e.g. MCAM, LDEV). A second listing of these names is taxonomically arranged in families with the families listed alphabetically, higher level classification being outside the scope of this work. We also provide a list of names that have apparently been applied to trilobites but which remain nomina nuda within the ICZN definition. Peter A. Jell, Queensland Museum, PO Box 3300, South Brisbane, Queensland 4101, Australia; Jonathan M. Adrain, Department of Geoscience, 121 Trowbridge Hall, Univ- ersity of Iowa, Iowa City, Iowa 52242, USA; 1 August 2002. p Trilobites, generic names, checklist. Trilobite fossils attracted the attention of could find. This list was copied on an early spirit humans in different parts of the world from the stencil machine to some 20 or more trilobite very beginning, probably even prehistoric times. workers around the world, principally those who In the 1700s various European natural historians would author the 1959 Treatise edition. Weller began systematic study of living and fossil also drew on this compilation for his Presidential organisms including trilobites. -
How to Become a Crab: Phenotypic Constraints on a Recurring Body Plan
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 25 December 2020 doi:10.20944/preprints202012.0664.v1 How to become a crab: Phenotypic constraints on a recurring body plan Joanna M. Wolfe1*, Javier Luque1,2,3, Heather D. Bracken-Grissom4 1 Museum of Comparative Zoology and Department of Organismic & Evolutionary Biology, Harvard University, 26 Oxford St, Cambridge, MA 02138, USA 2 Smithsonian Tropical Research Institute, Balboa–Ancon, 0843–03092, Panama, Panama 3 Department of Earth and Planetary Sciences, Yale University, New Haven, CT 06520-8109, USA 4 Institute of Environment and Department of Biological Sciences, Florida International University, Biscayne Bay Campus, 3000 NE 151 Street, North Miami, FL 33181, USA * E-mail: [email protected] Summary: A fundamental question in biology is whether phenotypes can be predicted by ecological or genomic rules. For over 140 years, convergent evolution of the crab-like body plan (with a wide and flattened shape, and a bent abdomen) at least five times in decapod crustaceans has been known as ‘carcinization’. The repeated loss of this body plan has been identified as ‘decarcinization’. We offer phylogenetic strategies to include poorly known groups, and direct evidence from fossils, that will resolve the pattern of crab evolution and the degree of phenotypic variation within crabs. Proposed ecological advantages of the crab body are summarized into a hypothesis of phenotypic integration suggesting correlated evolution of the carapace shape and abdomen. Our premise provides fertile ground for future studies of the genomic and developmental basis, and the predictability, of the crab-like body form. Keywords: Crustacea, Anomura, Brachyura, Carcinization, Phylogeny, Convergent evolution, Morphological integration 1 © 2020 by the author(s). -
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S. Fish and Wildlife Service Region 4—An Update April 2013 Prepared by: Pam L. Fuller, Amy J. Benson, and Matthew J. Cannister U.S. Geological Survey Southeast Ecological Science Center Gainesville, Florida Prepared for: U.S. Fish and Wildlife Service Southeast Region Atlanta, Georgia Cover Photos: Silver Carp, Hypophthalmichthys molitrix – Auburn University Giant Applesnail, Pomacea maculata – David Knott Straightedge Crayfish, Procambarus hayi – U.S. Forest Service i Table of Contents Table of Contents ...................................................................................................................................... ii List of Figures ............................................................................................................................................ v List of Tables ............................................................................................................................................ vi INTRODUCTION ............................................................................................................................................. 1 Overview of Region 4 Introductions Since 2000 ....................................................................................... 1 Format of Species Accounts ...................................................................................................................... 2 Explanation of Maps ................................................................................................................................