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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Centropages (Crustacea) Collected from Shimizu Port, Middle Japan: Introduced Or Not?
Plankton Biol. Ecol. 52 (2): 92-99, 2005 plankton biology & ecology €■ The Planklon Society of Japan 21)05 A new species of the calanoid copepod genus Centropages (Crustacea) collected from Shimizu Port, Middle Japan: Introduced or not? Susumu Ohtsuka1, Hiroshi Itoh2 & Takeshi Mizushima3 ' Takeham Marine Science Station, Setouchi Field Science Center. Graduate School of Biosphere Science, Hiroshima University, 5-8-1 Minaio-machi, Takehara 725-0024, Japan 'Suidosha Co. Ltd., 8-11-11 Ikuta, Tama-Ku, Kawasaki 214-0038, Japan 3 School ofMarine Science and Technology. Tokai University, 3-20-1 Orido, Shimizu-Ku, Shizuoka 424-8610, Japan Received 12 March 2005; Accepted 13 May 2005 Abstract: A new species of the planktonic calanoid copepod Centropages is described from Shimizu Port, Middle Japan. The new species is assigned to the alcocki group that is distributed in the tropi cal/subtropical Indo-West Pacific regions. The sporadic occurrence of the new species alludes to the possibility that the new species was introduced to Japan via ballast water. Key words: Centropages maigo, alien species, Calanoida, ballast water, Shimizu Port coastal species are very abundant and play important roles Introduction as food for fish (Brodsky 1950, Chen & Zhang 1965). In Alien marine benthic species are an increasingly serious Japanese waters the following ten species of the genus have problem all over the world and are now being joined by hitherto been recorded: C. abdominalis Sato, 1913; C. planktonic species. On the Pacific coast of the U.S.A. and bradyi Wheeler, 1899; C. calaninus (Dana, 1849); C. elon Chile, many planktonic copepods have been introduced gates Giesbrecht, 1896; C. -
Zootaxa,Crustacean Classification
Zootaxa 1668: 313–325 (2007) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2007 · Magnolia Press ISSN 1175-5334 (online edition) Crustacean classification: on-going controversies and unresolved problems* GEOFF A. BOXSHALL Department of Zoology, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom E-mail: [email protected] *In: Zhang, Z.-Q. & Shear, W.A. (Eds) (2007) Linnaeus Tercentenary: Progress in Invertebrate Taxonomy. Zootaxa, 1668, 1–766. Table of contents Abstract . 313 Introduction . 313 Treatment of parasitic Crustacea . 315 Affinities of the Remipedia . 316 Validity of the Entomostraca . 318 Exopodites and epipodites . 319 Using of larval characters in estimating phylogenetic relationships . 320 Fossils and the crustacean stem lineage . 321 Acknowledgements . 322 References . 322 Abstract The journey from Linnaeus’s original treatment to modern crustacean systematics is briefly characterised. Progress in our understanding of phylogenetic relationships within the Crustacea is linked to continuing discoveries of new taxa, to advances in theory and to improvements in methodology. Six themes are discussed that serve to illustrate some of the major on-going controversies and unresolved problems in the field as well as to illustrate changes that have taken place since the time of Linnaeus. These themes are: 1. the treatment of parasitic Crustacea, 2. the affinities of the Remipedia, 3. the validity of the Entomostraca, 4. exopodites and epipodites, 5. using larval characters in estimating phylogenetic rela- tionships, and 6. fossils and the crustacean stem-lineage. It is concluded that the development of the stem lineage concept for the Crustacea has been dominated by consideration of taxa known only from larval or immature stages. -
Crustaceans Topics in Biodiversity
Topics in Biodiversity The Encyclopedia of Life is an unprecedented effort to gather scientific knowledge about all life on earth- multimedia, information, facts, and more. Learn more at eol.org. Crustaceans Authors: Simone Nunes Brandão, Zoologisches Museum Hamburg Jen Hammock, National Museum of Natural History, Smithsonian Institution Frank Ferrari, National Museum of Natural History, Smithsonian Institution Photo credit: Blue Crab (Callinectes sapidus) by Jeremy Thorpe, Flickr: EOL Images. CC BY-NC-SA Defining the crustacean The Latin root, crustaceus, "having a crust or shell," really doesn’t entirely narrow it down to crustaceans. They belong to the phylum Arthropoda, as do insects, arachnids, and many other groups; all arthropods have hard exoskeletons or shells, segmented bodies, and jointed limbs. Crustaceans are usually distinguishable from the other arthropods in several important ways, chiefly: Biramous appendages. Most crustaceans have appendages or limbs that are split into two, usually segmented, branches. Both branches originate on the same proximal segment. Larvae. Early in development, most crustaceans go through a series of larval stages, the first being the nauplius larva, in which only a few limbs are present, near the front on the body; crustaceans add their more posterior limbs as they grow and develop further. The nauplius larva is unique to Crustacea. Eyes. The early larval stages of crustaceans have a single, simple, median eye composed of three similar, closely opposed parts. This larval eye, or “naupliar eye,” often disappears later in development, but on some crustaceans (e.g., the branchiopod Triops) it is retained even after the adult compound eyes have developed. In all copepod crustaceans, this larval eye is retained throughout their development as the 1 only eye, although the three similar parts may separate and each become associated with their own cuticular lens. -
National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
National monitoring program for biodiversity and non-indigenous species in Egypt January 2016 1 TABLE OF CONTENTS page Acknowledgements 3 Preamble 4 Chapter 1: Introduction 8 Overview of Egypt Biodiversity 37 Chapter 2: Institutional and regulatory aspects 39 National Legislations 39 Regional and International conventions and agreements 46 Chapter 3: Scientific Aspects 48 Summary of Egyptian Marine Biodiversity Knowledge 48 The Current Situation in Egypt 56 Present state of Biodiversity knowledge 57 Chapter 4: Development of monitoring program 58 Introduction 58 Conclusions 103 Suggested Monitoring Program Suggested monitoring program for habitat mapping 104 Suggested marine MAMMALS monitoring program 109 Suggested Marine Turtles Monitoring Program 115 Suggested Monitoring Program for Seabirds 117 Suggested Non-Indigenous Species Monitoring Program 121 Chapter 5: Implementation / Operational Plan 128 Selected References 130 Annexes 141 2 AKNOWLEGEMENTS 3 Preamble The Ecosystem Approach (EcAp) is a strategy for the integrated management of land, water and living resources that promotes conservation and sustainable use in an equitable way, as stated by the Convention of Biological Diversity. This process aims to achieve the Good Environmental Status (GES) through the elaborated 11 Ecological Objectives and their respective common indicators. Since 2008, Contracting Parties to the Barcelona Convention have adopted the EcAp and agreed on a roadmap for its implementation. First phases of the EcAp process led to the accomplishment of 5 steps of the scheduled 7-steps process such as: 1) Definition of an Ecological Vision for the Mediterranean; 2) Setting common Mediterranean strategic goals; 3) Identification of an important ecosystem properties and assessment of ecological status and pressures; 4) Development of a set of ecological objectives corresponding to the Vision and strategic goals; and 5) Derivation of operational objectives with indicators and target levels. -
Temora Baird, 1850
Temora Baird, 1850 Iole Di Capua Leaflet No. 195 I April 2021 ICES IDENTIFICATION LEAFLETS FOR PLANKTON FICHES D’IDENTIFICATION DU ZOOPLANCTON ICES INTERNATIONAL COUNCIL FOR THE EXPLORATION OF THE SEA CIEM CONSEIL INTERNATIONAL POUR L’EXPLORATION DE LA MER International Council for the Exploration of the Sea Conseil International pour l’Exploration de la Mer H. C. Andersens Boulevard 44–46 DK-1553 Copenhagen V Denmark Telephone (+45) 33 38 67 00 Telefax (+45) 33 93 42 15 www.ices.dk [email protected] Series editor: Antonina dos Santos and Lidia Yebra Prepared under the auspices of the ICES Working Group on Zooplankton Ecology (WGZE) This leaflet has undergone a formal external peer-review process Recommended format for purpose of citation: Di Capua, I. 2021. Temora Baird, 1850. ICES Identification Leaflets for Plankton No. 195. 17 pp. http://doi.org/10.17895/ices.pub.7719 ISBN number: 978-87-7482-580-7 ISSN number: 2707-675X Cover Image: Inês M. Dias and Lígia F. de Sousa for ICES ID Plankton Leaflets This document has been produced under the auspices of an ICES Expert Group. The contents therein do not necessarily represent the view of the Council. © 2021 International Council for the Exploration of the Sea. This work is licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0). For citation of datasets or conditions for use of data to be included in other databases, please refer to ICES data policy. i | ICES Identification Leaflets for Plankton 195 Contents 1 Summary ......................................................................................................................... 1 2 Introduction .................................................................................................................... 1 3 Distribution .................................................................................................................... -
The Tantulocaridan Life Cycle: the Circle Closed?
JOURNAL OF CRUSTACEAN BIOLOGY, 13(3): 432-442, 1993 THE TANTULOCARIDAN LIFE CYCLE: THE CIRCLE CLOSED? Rony Huys, Geoffrey A. Boxshall, and Roger J. Lincoln ABSTRACT The discovery of a new stage in the life cycle of the Tantulocarida is reported. A sexual female, collected from a deep-sea harpacticoid copepod host, was removed from the trunk sac of the preceding tantulus larva. This female is a free-living and nonfeeding stage which pre- sumably mates with the free-swimming adult male previously described. The female comprises a cephalothorax, probably incorporating 2 limbless thoracic somites, 2 free pedigerous trunk somites, and 3 limbless trunk somites. It also possesses paired antennules, the only well-defined cephalic appendages present at any stage in tantulocaridan life history. There is a median genital aperture, the copulatory pore, located ventrally on the cephalothorax at about the level of the incorporated first thoracic somite. This is interpreted as further evidence of a sister-group relationship between the Tantulocarida and the Thecostraca. The known life-cycle stages of the Tantulocarida are now interpreted as forming two cycles, one sexual, the other parthenogenetic. Tantulocaridans are minute ectoparasitic might exist, leading to a large, free-swim- crustaceans that utilize a variety of other ming adult which would be capable of mat- crustacean groups as hosts (Bcxshall and ing with the known adult male. Huys (1991) Lincoln, 1983). The known life cycle of the interpreted the significant variation in penis Tantulocarida, as described by Boxshall and structure in known male tantulocaridans Lincoln (1987), is remarkable for the com- (Huys, 1990) as evidence in support of the plete lack of any typical crustacean molting existence of a sexual female with comple- process. -
Observing Copepods Through a Genomic Lens James E Bron1*, Dagmar Frisch2, Erica Goetze3, Stewart C Johnson4, Carol Eunmi Lee5 and Grace a Wyngaard6
Bron et al. Frontiers in Zoology 2011, 8:22 http://www.frontiersinzoology.com/content/8/1/22 DEBATE Open Access Observing copepods through a genomic lens James E Bron1*, Dagmar Frisch2, Erica Goetze3, Stewart C Johnson4, Carol Eunmi Lee5 and Grace A Wyngaard6 Abstract Background: Copepods outnumber every other multicellular animal group. They are critical components of the world’s freshwater and marine ecosystems, sensitive indicators of local and global climate change, key ecosystem service providers, parasites and predators of economically important aquatic animals and potential vectors of waterborne disease. Copepods sustain the world fisheries that nourish and support human populations. Although genomic tools have transformed many areas of biological and biomedical research, their power to elucidate aspects of the biology, behavior and ecology of copepods has only recently begun to be exploited. Discussion: The extraordinary biological and ecological diversity of the subclass Copepoda provides both unique advantages for addressing key problems in aquatic systems and formidable challenges for developing a focused genomics strategy. This article provides an overview of genomic studies of copepods and discusses strategies for using genomics tools to address key questions at levels extending from individuals to ecosystems. Genomics can, for instance, help to decipher patterns of genome evolution such as those that occur during transitions from free living to symbiotic and parasitic lifestyles and can assist in the identification of genetic mechanisms and accompanying physiological changes associated with adaptation to new or physiologically challenging environments. The adaptive significance of the diversity in genome size and unique mechanisms of genome reorganization during development could similarly be explored. -
Australian Marine Zooplankton-Calanoid Copepods Part 2
Phylum Arthropoda Order Calanoida Candacia truncata Family Candaciidae Dana, 1849 Size ♂ Male: 1.87 – 2.11 mm scale: mm A1 P5 Male • Geniculate right A1 has a series of stout proximal segments followed by a thin section, then a broad club 1.0 section, beyond club section, segment 16 has a finger-like protrusion which is difficult to observe clearly; fused segments 17 and 18 are characteristically curved • Last prosome somite symmetrical with sharp points • P5 left segment 4 with 3 setae; right P5 not chelate and segment 3 urosome terminates in long plumose setae • Urosome and caudal rami symmetrical with no projections Ecology • Specialised predator, grasping prey with large and robust maxillae • Larvaceans are major prey item Source Boxshall & Halsey (2004) Bradford-Grieve (1999) Chen and Zhang (1965) Conway (2003) Tanaka (1935) ; Chen & Zhang (1965) Greenwood (1978) Razouls et al. (2010) preserved specimen Tanaka (1935) (Full reference available at http://www.imas.utas.edu.au/zooplankton/references ) Compiled: C. H. Davies & A. S. Slotwinski 2012 Images: AusCPR Verified: K. M. Swadling 2013 Phylum Arthropoda Centropages australiensis Order Calanoida Fairbridge, 1944 Family Centropagidae Synonyms None ♀ exopod 2 spine-like scale: mm process Size Female: 1.43 mm 1.0 Genus notes • Small to medium size • Cephalosome and pedigerous somite 1 are fused (fusion lines visible on sides) • Single naupliar eye P5 • Lateral corners of posterior prosome often end in asymmetrical points • Characteristic undulating edge on last prosomal somite between -
Fleminger, A. Distributional Atlas of Calanoid Copepods in the California Current Region, Part I
Atlas 2: Fleminger, A. Distributional atlas of calanoid copepods in the California Current region, Part I. Published December 1964. 16 May 2007 The taxonomic nomenclature in the atlas is exactly as published, even though the copepods have undergone taxonomic revision. Below are several references that may be useful in updating the species names: the Smithsonian web site, http://ravenel.si.edu/iz/copepod/species/species_Search.cfm Frost, B. and Fleminger, A. 1968. A revision of the genus Clausocalanus (Copepoda: Calanopoda) with remarks on distributional patterns in diagnostic characters. Bulletin of the Scripps Institution of Oceanography 12, 1-235. Bradford, J. 1976. Partial Revision of the Acartia subgenus Acartiura (Copepoda: Calanoida: Acartiidae). N.Z. Journal of Marine and Freshwater Research 19(1): 159-202. Park, T. 1994. Taxonomy and distribution of the marine calanoid copepod family Euchaetidae. Bulletin of the Scripps Institution of Oceanography 29: 1-203. Mauchline, J. 1998.The Biology of Calanoid Copepods. Advances in Marine Biology 33: 1-710. Park, T. 1999. Taxonomy and distribution of the marine calanoid copepod family Heterorhabdidae. Bulletin of the Scripps Institution of Oceanography 31: 1-269. 1 Imm I Calanus helgolandicus Canthocalanus pauper Pie uromam ma xiph ius STATE OF CALIFORNIA MARINE RESEARCH COMMITTEE CALI FOR NI A COOP ERAT IV E OCEANIC FISHERIES I NV EST1GAT IO NS ,-- Cooperating Agencies: CALIFORNIA ACADEMY OF SCIENCES CALIFORNIA DEPARTMENT OF FISH AND GAME STANFORD UNIVERSITY, HOPKINS MARINE STATION U. S. FISH AND WILDLIFE SERVICE, BUREAU OF COMMERCIAL FISHERIES UNIVERSITY OF CALIFORNIA, SCRIPPS INSTITUTION OF OCEANOGRAPHY December, 1 964 CONTENTS Preface v-vii Distributional Atlas of Calanoid Copepods in the California Current Region, Part I. -
Fossil Calibrations for the Arthropod Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/044859; this version posted June 10, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. FOSSIL CALIBRATIONS FOR THE ARTHROPOD TREE OF LIFE AUTHORS Joanna M. Wolfe1*, Allison C. Daley2,3, David A. Legg3, Gregory D. Edgecombe4 1 Department of Earth, Atmospheric & Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 2 Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK 3 Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PZ, UK 4 Department of Earth Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK *Corresponding author: [email protected] ABSTRACT Fossil age data and molecular sequences are increasingly combined to establish a timescale for the Tree of Life. Arthropods, as the most species-rich and morphologically disparate animal phylum, have received substantial attention, particularly with regard to questions such as the timing of habitat shifts (e.g. terrestrialisation), genome evolution (e.g. gene family duplication and functional evolution), origins of novel characters and behaviours (e.g. wings and flight, venom, silk), biogeography, rate of diversification (e.g. Cambrian explosion, insect coevolution with angiosperms, evolution of crab body plans), and the evolution of arthropod microbiomes. We present herein a series of rigorously vetted calibration fossils for arthropod evolutionary history, taking into account recently published guidelines for best practice in fossil calibration.