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Genetic Diversity and Evolution in Lactuca L. (Asteraceae)
Genetic diversity and evolution in Lactuca L. (Asteraceae) from phylogeny to molecular breeding Zhen Wei Thesis committee Promotor Prof. Dr M.E. Schranz Professor of Biosystematics Wageningen University Other members Prof. Dr P.C. Struik, Wageningen University Dr N. Kilian, Free University of Berlin, Germany Dr R. van Treuren, Wageningen University Dr M.J.W. Jeuken, Wageningen University This research was conducted under the auspices of the Graduate School of Experimental Plant Sciences. Genetic diversity and evolution in Lactuca L. (Asteraceae) from phylogeny to molecular breeding Zhen Wei Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr A.P.J. Mol, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Monday 25 January 2016 at 1.30 p.m. in the Aula. Zhen Wei Genetic diversity and evolution in Lactuca L. (Asteraceae) - from phylogeny to molecular breeding, 210 pages. PhD thesis, Wageningen University, Wageningen, NL (2016) With references, with summary in Dutch and English ISBN 978-94-6257-614-8 Contents Chapter 1 General introduction 7 Chapter 2 Phylogenetic relationships within Lactuca L. (Asteraceae), including African species, based on chloroplast DNA sequence comparisons* 31 Chapter 3 Phylogenetic analysis of Lactuca L. and closely related genera (Asteraceae), using complete chloroplast genomes and nuclear rDNA sequences 99 Chapter 4 A mixed model QTL analysis for salt tolerance in -
Towards a Phylogenetic Classification of Lychnophorinae (Asteraceae: Vernonieae)
Benoît Francis Patrice Loeuille Towards a phylogenetic classification of Lychnophorinae (Asteraceae: Vernonieae) São Paulo, 2011 Benoît Francis Patrice Loeuille Towards a phylogenetic classification of Lychnophorinae (Asteraceae: Vernonieae) Tese apresentada ao Instituto de Biociências da Universidade de São Paulo, para a obtenção de Título de Doutor em Ciências, na Área de Botânica. Orientador: José Rubens Pirani São Paulo, 2011 Loeuille, Benoît Towards a phylogenetic classification of Lychnophorinae (Asteraceae: Vernonieae) Número de paginas: 432 Tese (Doutorado) - Instituto de Biociências da Universidade de São Paulo. Departamento de Botânica. 1. Compositae 2. Sistemática 3. Filogenia I. Universidade de São Paulo. Instituto de Biociências. Departamento de Botânica. Comissão Julgadora: Prof(a). Dr(a). Prof(a). Dr(a). Prof(a). Dr(a). Prof(a). Dr(a). Prof. Dr. José Rubens Pirani Orientador To my grandfather, who made me discover the joy of the vegetal world. Chacun sa chimère Sous un grand ciel gris, dans une grande plaine poudreuse, sans chemins, sans gazon, sans un chardon, sans une ortie, je rencontrai plusieurs hommes qui marchaient courbés. Chacun d’eux portait sur son dos une énorme Chimère, aussi lourde qu’un sac de farine ou de charbon, ou le fourniment d’un fantassin romain. Mais la monstrueuse bête n’était pas un poids inerte; au contraire, elle enveloppait et opprimait l’homme de ses muscles élastiques et puissants; elle s’agrafait avec ses deux vastes griffes à la poitrine de sa monture et sa tête fabuleuse surmontait le front de l’homme, comme un de ces casques horribles par lesquels les anciens guerriers espéraient ajouter à la terreur de l’ennemi. -
Vernonieae: Asteraceae)
PROCEEDINGS OF THE BIOLOGICAL SOCIETY OF WASHINGTON 122(2):146–149. 2009. A new genus, Khasianthus, from India, Myanmar, and China (Vernonieae: Asteraceae) Harold Robinson* and John J. Skvarla (HR) Department of Botany, MRC 166, National Museum of Natural History, P.O. Box 37012, Smithsonian Institution, Washington, D.C. 20013-7012, U.S.A., e-mail: [email protected]; (JJS) Department of Botany and Microbiology, and Oklahoma Biological Survey, University of Oklahoma, Norman, Oklohama 73019-6131, U.S.A., e-mail: [email protected] Abstract.—A new Asian genus of Vernonieae, Khasianthus, is named for Vernonia subsessilis DC. It is most closely related to the primarily African genus Baccharoides Moench. The recognition that the genus Verno- Materials and Methods nia Schreb. is mostly North American (Robinson 1999a) means that most spe- Pollen was removed from herbarium cies formerly placed in that genus have to sheets from the U.S. National Herbarium be reassigned. Species to be reassigned in Washington, D.C. and treated with include all the Old World members of the acetolysis solution (Erdtman 1960). Prep- tribe Vernonieae under the name Verno- aration for scanning electron microscopy nia. Reassignment of paleotropical Ver- (SEM) consisted of staining with osmium- nonieae was begun by Robinson (1999b), thiocarbohydrazide and pulse sputter but that treatment was incomplete and coating as described in detail in recent overly simplistic. More concise concepts studies of Asian Vernonieae (Robinson & have more recently been derived for Skvarla 2006, 2007; Robinson et al. 2008). members of the subtribe Gymnanthemi- Examination was with JEOL 880, LEICA nae in Asia with the restoration of the 440, and AMRAY 1810 scanning electron genera Monosis DC. -
6. Tribe VERNONIEAE 86. ETHULIA Linnaeus F., Dec. Prima Pl. Horti Upsal. 1. 1762
Published online on 25 October 2011. Chen, Y. L. & Gilbert, M. G. 2011. Vernonieae. Pp. 354–370 in: Wu, Z. Y., Raven, P. H. & Hong, D. Y., eds., Flora of China Volume 20–21 (Asteraceae). Science Press (Beijing) & Missouri Botanical Garden Press (St. Louis). 6. Tribe VERNONIEAE 斑鸠菊族 ban jiu ju zu Chen Yilin (陈艺林 Chen Yi-ling); Michael G. Gilbert Herbs, shrubs, sometimes climbing, or trees; hairs simple, T-shaped, or stellate. Leaves usually alternate [rarely opposite or whorled], leaf blade entire or serrate-dentate [rarely pinnately divided], venation pinnate, rarely with 3 basal veins (Distephanus). Synflorescences mostly terminal, less often terminal on short lateral branches or axillary, mostly cymose paniculate, less often spikelike, forming globose compound heads or reduced to a solitary capitulum. Capitula discoid, homogamous. Phyllaries generally imbricate, in several rows, rarely in 2 rows, herbaceous, scarious or leathery, outer gradually shorter. Receptacle flat or rather convex, naked or ± fimbriate. Florets 1–400, all bisexual, fertile; corolla tubular, purple, reddish purple, pink, or white, rarely yellow (Distephanus), limb narrowly campanulate or funnelform, 5-lobed. Anther base bifid, auriculate, acute or hastate, rarely caudate, apex appendaged. Style branches usually long and slender, apex subulate or acute, dorsally pilose, without appendage. Achenes cylindric or slightly flattened, (2–)5–10[–20]-ribbed, or 4- or 5-angled, rarely ± terete; pappus usually present, persistent, of many filiform setae, bristles, or scales, often 2-seriate with inner series of setae or bristles and shorter outer series of scales, sometimes very few and deciduous (Camchaya) or absent (Ethulia). Up to 120 genera and 1,400 species: throughout the tropics and extending into some temperate regions; six genera (one introduced) and 39 species (ten endemic, two introduced) in China. -
Hainan-BR-2.Pdf
Bot. Rev. (2010) 76:346–376 DOI 10.1007/s12229-010-9055-7 Seed Plant Endemism on Hainan Island: A Framework for Conservation Actions Javier Francisco-Ortega1,2 & Zhong-Sheng Wang3,12 & Fa-Guo Wang4 & Fu-Wu Xing4 & Hong Liu2,5 & Han Xu6 & Wei-Xiang Xu3 & Yi-Bo Luo7 & Xi-Qiang Song8 & Stephan Gale9 & David E. Boufford10 & Mike Maunder1,2,11 & Shu-Qing An3,12 1 Department of Biological Sciences, Florida International University, Miami FL33199, USA 2 Center for Tropical Plant Conservation, Fairchild Tropical Botanic Garden, Coral Gables, Miami, FL 33156, USA 3 Laboratory of Forest Ecology and Global Change, School of Life Science, Nanjing University, Nanjing 210093, People’s Republic of China 4 South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, People’s Republic of China 5 Department of Earth and Environment, Florida International University, Miami FL33199, USA 6 Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, People’s Republic of China 7 Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing 100093, People’s Republic of China 8 Key Laboratory of Tropical Horticultural Plant Resources and Genetic Improvement, Hainan University, Haikou 570228, People’s Republic of China 9 Kadoorie Farm and Botanic Garden, Lam Kam Road, Tai Po, New Territories, Hong Kong SAR, People’s Republic of China 10 Harvard University Herbaria, 22 Divinity Avenue, Cambridge, MA 02138, USA 11 Al Ain Wildlife Park and Resort, PO Box 1204, Al Ain, Abu Dhabi, United Arab Emirates 12 Authors for Correspondence; e-mail: [email protected]; [email protected] Published online: 20 May 2010 # The New York Botanical Garden 2010 Abstract Hainan, the second largest island of China, has the most extensive and best preserved tropical forests of this country. -
WO 2016/092376 Al 16 June 2016 (16.06.2016) W P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2016/092376 Al 16 June 2016 (16.06.2016) W P O P C T (51) International Patent Classification: HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, A61K 36/18 (2006.01) A61K 31/465 (2006.01) KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, A23L 33/105 (2016.01) A61K 36/81 (2006.01) MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, A61K 31/05 (2006.01) BO 11/02 (2006.01) PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, A61K 31/352 (2006.01) SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (21) International Application Number: PCT/IB20 15/002491 (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, (22) International Filing Date: GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, 14 December 2015 (14. 12.2015) TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, (25) Filing Language: English TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, (26) Publication Language: English LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, (30) Priority Data: SM, TR), OAPI (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, 62/09 1,452 12 December 201 4 ( 12.12.20 14) US GW, KM, ML, MR, NE, SN, TD, TG). -
Asteraceae Is One of the Largest Families of Flowering Plants Which Has Not Been Revised for the Flora Malesiana (Ross 1993)
BIOTROPIA NO. 19, 2002 : 65 - 84 NOTES ON THE ASTERACEAE OF SUMATERA SRI SUDARMIYATI TJITROSOEDIRDJO Dept. of Biology, Faculty of Science and Mathematics, Bogor Agricultural University, Jl. Raya Pajajaran, Bogor and South East Asian Regional Center for Tropical Biology (SEAMEO BIOTROP) P.O. Box 116, Bogor, Indonesia. ABSTRACT An account of the tribe composition, endemic taxa, comparison with adjacent areas and weedy Asteraceae of Sumatera is given. Based on the records of January 2000, there are 133 species of 74 genera in 11 tribes. The tribe Heliantheae is the largest, with 28% of the total number of the genera, followed by Astereae with 15%, Inuleae 12%, Senecioneae 10%, Anthemideae, Eupatorieae and Lactuceae 8%, the other tribes are represented by 4% or less. The most diverse genus is Blumea with 14 species. Other genera are only represented by 10 species or less, usually 4, or 3, or 2, and mostly by 1 species only. Thirty nine or about 53% are exotic genera and the native ones are less than half of the total number of the genera. In terms of indigenous and endemic species, Sumatera is richer than Java. There are 1 genus, 7 species and 2 varieties of Asteraceae endemic to Sumatera. A number of 43 important weed species were introduced from Tropical America, Africa, Asia and Europe. Among these Chromolaena odorata and Mikania micrantha are reported as the most noxious ones. List of the genera and species recorded in Sumatera is provided in this paper. Key words : Asteraceae/Sumatera/compositions/endemic species/distribution/weedy Asteraceae INTRODUCTION Asteraceae is one of the largest families of flowering plants which has not been revised for the Flora Malesiana (Ross 1993). -
Erlangeinae, Vernonieae, Asteraceae)
A peer-reviewed open-access journal PhytoKeys 39: 49–64Two (2014) new genera, Hoffmannanthus and Jeffreycia, mostly from East Africa... 49 doi: 10.3897/phytokeys.39.7624 RESEARCH ARTICLE www.phytokeys.com Launched to accelerate biodiversity research Two new genera, Hoffmannanthus and Jeffreycia, mostly from East Africa (Erlangeinae, Vernonieae, Asteraceae) Harold Robinson1, Sterling C. Keeley2, John J. Skvarla3,†, Raymund Chan1 1 Department of Botany, MRC 166, National Museum of Natural History, Smithsonian Institution, P.O. Box 37012, Washington, DC., 20013-7012, USA 2 Department of Botany, University of Hawaii, Manoa, 3190 Maile aWay, #101, Honolulu, Hawaii, 96822-2279, USA 3 Department of Botany and Microbiology, and Oklahoma Biological Survey, University of Oklahoma, Norman, Oklahoma, 73018-6131, USA, deceased 2 March 2014 Corresponding author: Harold Robinson ([email protected]) Academic editor: A. Sennikov | Received 1 April 2014 | Accepted 8 July 2014 | Published 18 July 2014 Citation: Robinson H, Keeley SC, Skvarla JJ, Chan R (2014) Two new genera, Hoffmannanthus and Jeffreycia, mostly from East Africa (Erlangeinae, Vernonieae, Asteraceae). PhytoKeys 39: 49–64. doi: 10.3897/phytokeys.39.7624 Abstract Two genera of Vernonieae subtribe Erlangeinae with Type A pollen, 5-ribbed achenes, and blunt-tipped sweeping hairs on the styles are described as new, Hoffmannanthus with one species and with Vernonia brachycalyx O. Hoffm. as type, and Jeffreycia with five known species, with Vernonia zanzibarensis Less. as type. Vernonia abbotiana O. Hoffm. is neotypified and is an older name for V. brachycalyx. Keywords Africa, Compositae, Erlangeinae, Hoffmannanthus, Jeffreycia, new genera, Vernonieae Introduction The dismantling of the overly broad concept of Vernonia Schreb. -
Asteraceae) of China with a Study of Their Pollen
Taiwania, 55(3): 254-272, 2010 Genera of the Vernonieae (Asteraceae) of China with a Study of Their Pollen Harold Robinson(1) and John J. Skvarla(2*) 1. Department of Botany, NHB 166, National Museum of Natural History, P.O. Box 37012, Smithsonian Institution, Washington, D.C. 20013-7012, USA. Email: [email protected] 2. Department of Botany and Microbiology, and Oklahoma Biological Survey, University of Oklahoma, Norman, Oklahoma, 73019-6131, USA. * Corresponding author. Email: [email protected] (Manuscript received 10 March 2010; accepted 10 May 2010) ABSTRACT: The genera and species of Vernonieae in China are reviewed using revised generic concepts. The recognized genera are Acilepis, Baccharoides, Camchaya, Cyanthillium, Decaneuropsis, Distephanus, Elephantopus, Ethulia, Gymnanthemum, Khasianthus, Monosis, Pseudelephantopus, Strobocalyx, and Tarlmounia. The pollen of each genus is described and illustrated. Keys are provided to genera and species. KEY WORDS: Vernonieae, Asteraceae, pollen, SEM, generic descriptions, keys, China. the completed results on a country by country basis, and INTRODUCTION not to wait for resolution of species in other areas such Generic revisions in the tribe Vernonieae during the as India (Uniyal, 1995) which has a more complex last 30 years have been generally completed for the Vernonian flora. Of additional interest in the case of Western Hemisphere members (Robinson, 1999b), but China, most of the genera seem to have distinctive were only partially and inadequately dealt with in the forms of pollen. For that reason, pollen is reviewed and Eastern Hemisphere members (Robinson, 1999a). These illustrated with SEM micrographs for each genus. treatments were summarized in the Kubitzki volume (Robinson, 2007). -
Measures of Fitness and Genetic Variation in the Endangered
MEASURES OF FITNESS AND GENETIC VARIATION IN THE ENDANGERED HAWAIIAN GENUS HESPEROMANNIA A THESIS SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAI‘I IN PARTIAL FULFULLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE IN BOTANICAL SCIENCES (BOTANY- ECOLOGY, EVOLUTION, AND CONSERVATION BIOLOGY) DECEMBER 2003 By Susan Nalani Ching Harbin THESIS COMMITTEE Clifford W. Morden, Chairperson Gerald D. Carr David C. Duffy Acknowledgements I would like to acknowledge the following people for their role in the completion of this thesis: My Committee for their wonderful editing and sincere interest in this project; Dr. Morden for his kind and insightful mentoring in the lab, in the field and in the classroom, and for all the helpful discussions on evolution and natural history; Dr. Carr for his editing insights and his motivating love of botanical taxonomy; Dr. Duffy for his interest and support in this project; Dr. Keeley and Dr. Chan for lab assistance; Also for their help in the lab and in the analyses of this research Dr. Alison Sherwood, Candace Felling, Maya LeGrande, Shelly Lammers, Christina Crooker, and Terry LeBeck; Nellie Sugii and the Lyon Arboretum Staff for creating a nurturing botanical environment to learn in; and Dr. Lamoureux for kindling my interests in conservation and Hawaiian natural history. I would also like to thank the following organizations and people for their generous time and money spent in helping with field collections: the US Army Garrison Environmental Unit, Dan Sailer with the Nature Conservancy, Randy Bartlett and Hank Oppenhiemer with Maui Land and Pineapple Co., Ken Wood and Steve Perlman, the National Tropical Botanical Gardens, and Vickie Caraway (DLNR). -
Generic and Subtribal Classification of American Vernonieae
SMITHSONIAN CONTRIBUTIONS TO BOTANY NUMBER 89 Generic and Subtribal Classification of American Vernonieae Harold Robinson Smithsonian Institution Press Washington, D.C. 1999 ABSTRACT Robinson, Harold. Generic and Subtribal Classification of American Vernonieae. Smithso- niun Contributions to Botany, number 89, 116 pages, 1999.-The Vernonieae in America is herein defined to exclude the Liabeae and Pseudostifftiu (Moquinieae), and to include elements sometimes placed in the Heliantheae (Trichospiru) or Lactuceae (Stokesiu). Pollen, style bases, raphids, inflorescence form, involucre, anther appendage, and chemistry are some characters used in the reclassification. Tables 1-12 indicate the distribution of these characteristics in most American genera. Vernoniu s.s., with type A pollen, is typified by K noveborucensis (L.) and occurs in the Bahamas, eastern North America, south to central Mexico and has two spe- cies in temperate South America. All other species previously placed in Vernoniu need to be removed from the genus, a process that is nearly complete for neotropical species. Most Amer- ican Vernonieae seem to form a single related subgroup in the tribe. Subtribes included in the related subgroup are the Lychnophorinae (x = 15, 17, 18) and Centratherinae (x = 16) with type A pollen and hroheliangolides; Piptocarphinae (x= 17) with type A pollen, deciduous inner involucre, and sometimes opposite leaves; Vernoniinae (x = 17), many with glanduliferous anther appendages (including the Lepiduplou complex mostly with echinolophate pollen); and the newly proposed subtribes Sipolisiinae with type A pollen, armed receptacles, and carbon- ized achenes; Chrestinae with echinolophate pollen; and Leiboldiinae (x= 19) with type A pol- len, large heads, and a modified callus at the top of the achene. -
Asteraceae Or Compositae, Vernonieae)
A peer-reviewed open-access journal PhytoKeys 3: 21–34 (2011) Nothovernonia 21 doi: 10.3897/phytokeys.3.1131 RESEARCH ARTICLE www.phytokeys.com Launched to accelerate biodiversity research A new genus, Nothovernonia, from tropical Africa (Asteraceae or Compositae, Vernonieae) Harold Robinson, Vicki A. Funk Department of Botany, MRC 166, US National Herbarium, National Museum of Natural History, P.O. Box 37012, Smithsonian Institution, Washington, DC. 20013–7012 Corresponding author: Harold Robinson ([email protected]) Academic editor: Sandra Knapp | Received 15 February 2011 | Accepted 4 May 2011 | Published 30 May 2011 Citation: Robinson H, Funk VA (2011) A new genus, Nothovernonia, from tropical Africa (Asteraceae or Compositae, Vernonieae). PhytoKeys 3: 21–34. doi: 10.3897/phytokeys.3.1131 Abstract Nothovernonia gen. nov., is described as a new genus for the tropical African Vernonia purpurea Sch.Bip. ex Walp. and V. amblyolepis Bak, having cymiform inflorescences, pedunculate heads with differentiated foliiform bracts at the base, apiculate involucral bracts with scarious lateral margins, spiculiferous corolla lobes, and strongly spinose, sublopohate tricolporate pollen with the colpi meeting at the poles. The new genus belongs to the subtribe Centrapalinae and a key to the known DNA-sequenced genera of the subtribe is provided. The new species names are Nothovernonia purpurea (Sch.Bip. ex Walp.) H.Rob. and V.A.Funk, comb. nov., and N. amblyolepis (Baker) H.Rob. & V.A.Funk, comb. nov. Keywords Compositae, Nothovernonia, new genus, tropical Africa, Centrapalinae, Erlangineae, phylogeny Introduction Many genera have been named in the tribe Vernonieae over the last 200 years, see Jones (1979b, 1981) and Jeffrey (1988) for citations of many of the names.