Spatial and Temporal Heterogeneity of Macrofungi in the Protected Forests of Southern India
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Russulas of Southern Vancouver Island Coastal Forests
Russulas of Southern Vancouver Island Coastal Forests Volume 1 by Christine Roberts B.Sc. University of Lancaster, 1991 M.S. Oregon State University, 1994 A Dissertation Submitted in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY in the Department of Biology © Christine Roberts 2007 University of Victoria All rights reserved. This dissertation may not be reproduced in whole or in part, by photocopying or other means, without the permission of the author. Library and Bibliotheque et 1*1 Archives Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington Ottawa ON K1A0N4 Ottawa ON K1A0N4 Canada Canada Your file Votre reference ISBN: 978-0-494-47323-8 Our file Notre reference ISBN: 978-0-494-47323-8 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library permettant a la Bibliotheque et Archives and Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par Plntemet, prefer, telecommunication or on the Internet, distribuer et vendre des theses partout dans loan, distribute and sell theses le monde, a des fins commerciales ou autres, worldwide, for commercial or non sur support microforme, papier, electronique commercial purposes, in microform, et/ou autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in et des droits moraux qui protege cette these. -
Phd. Thesis Sana Jabeen.Pdf
ECTOMYCORRHIZAL FUNGAL COMMUNITIES ASSOCIATED WITH HIMALAYAN CEDAR FROM PAKISTAN A dissertation submitted to the University of the Punjab in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in BOTANY by SANA JABEEN DEPARTMENT OF BOTANY UNIVERSITY OF THE PUNJAB LAHORE, PAKISTAN JUNE 2016 TABLE OF CONTENTS CONTENTS PAGE NO. Summary i Dedication iii Acknowledgements iv CHAPTER 1 Introduction 1 CHAPTER 2 Literature review 5 Aims and objectives 11 CHAPTER 3 Materials and methods 12 3.1. Sampling site description 12 3.2. Sampling strategy 14 3.3. Sampling of sporocarps 14 3.4. Sampling and preservation of fruit bodies 14 3.5. Morphological studies of fruit bodies 14 3.6. Sampling of morphotypes 15 3.7. Soil sampling and analysis 15 3.8. Cleaning, morphotyping and storage of ectomycorrhizae 15 3.9. Morphological studies of ectomycorrhizae 16 3.10. Molecular studies 16 3.10.1. DNA extraction 16 3.10.2. Polymerase chain reaction (PCR) 17 3.10.3. Sequence assembly and data mining 18 3.10.4. Multiple alignments and phylogenetic analysis 18 3.11. Climatic data collection 19 3.12. Statistical analysis 19 CHAPTER 4 Results 22 4.1. Characterization of above ground ectomycorrhizal fungi 22 4.2. Identification of ectomycorrhizal host 184 4.3. Characterization of non ectomycorrhizal fruit bodies 186 4.4. Characterization of saprobic fungi found from fruit bodies 188 4.5. Characterization of below ground ectomycorrhizal fungi 189 4.6. Characterization of below ground non ectomycorrhizal fungi 193 4.7. Identification of host taxa from ectomycorrhizal morphotypes 195 4.8. -
Biodiversity and Molecular Ecology of Russula and Lactarius in Alaska Based on Soil and Sporocarp DNA Sequences
Russulales-2010 Scripta Botanica Belgica 51: 132-145 (2013) Biodiversity and molecular ecology of Russula and Lactarius in Alaska based on soil and sporocarp DNA sequences József GEML1,2 & D. Lee TAYLOR1 1 Institute of Arctic Biology, 311 Irving I Building, 902 N. Koyukuk Drive, P.O. Box 757000, University of Alaska Fairbanks, Fairbanks, AK 99775-7000, U.S.A. 2 (corresponding author address) National Herbarium of the Netherlands, Netherlands Centre for Biodiversity Naturalis, Leiden University, Einsteinweg 2, P.O. Box 9514, 2300 RA Leiden, The Netherlands [email protected] Abstract. – Although critical for the functioning of ecosystems, fungi are poorly known in high- latitude regions. This paper summarizes the results of the first genetic diversity assessments of Russula and Lactarius, two of the most diverse and abundant fungal genera in Alaska. LSU rDNA sequences from both curated sporocarp collections and soil PCR clone libraries sampled in various types of boreal forests of Alaska were subjected to phylogenetic and statistical ecological analyses. Our diversity assessments suggest that the genus Russula and Lactarius are highly diverse in Alaska. Some of these taxa were identified to known species, while others either matched unidentified sequences in reference databases or belonged to novel, previously unsequenced groups. Taxa in both genera showed strong habitat preference to one of the two major forest types in the sampled regions (black spruce forests and birch-aspen-white spruce forests), as supported by statistical tests. Our results demonstrate high diversity and strong ecological partitioning in two important ectomycorrhizal genera within a relatively small geographic region, but with implications to the expansive boreal forests. -
Svensk Mykologisk Tidskrift Volym 27 · Nummer 3 · 2006 Svensk Mykologisk Tidskrift Inkluderar Tidigare
Svensk Mykologisk Tidskrift Volym 27 · nummer 3 · 2006 Svensk Mykologisk Tidskrift inkluderar tidigare: www.svampar.se Svensk Mykologisk Tidskrift Sveriges Mykologiska Förening Tidskriften publicerar originalartiklar med svamp- Föreningen verkar för anknytning och med svenskt och nordeuropeiskt - en bättre kännedom om Sveriges svampar och intresse. Tidskriften utkommer med fyra nummer svampars roll i naturen per år och ägs av Sveriges Mykologiska Förening. - skydd av naturen och att svampplockning och Instruktioner till författare finns på SMF:s hemsi- annat uppträdande i skog och mark sker under da www.svampar.se. Svensk Mykologisk Tidskrift iakttagande av gällande lagar erhålls genom medlemskap i SMF. - att kontakter mellan lokala svampföreningar och svampintresserade i landet underlättas Redaktion - att kontakt upprätthålls med mykologiska före- Redaktör och ansvarig utgivare ningar i grannländer Mikael Jeppson - en samverkan med mykologisk forskning och Lilla Håjumsgatan 4, vetenskap. 461 35 TROLLHÄTTAN 0520-82910 Medlemskap erhålls genom insättning av med- [email protected] lemsavgiften 200:- (familjemedlem 30:-, vilket ej inkluderar Svensk Mykologisk Tidskrift) på postgi- Hjalmar Croneborg rokonto 443 92 02 - 5. Medlemsavgift inbetald Mattsarve Gammelgarn från utlandet är 250:-. 620 16 LJUGARN 018-672557 Subscriptions from abroad are welcome. [email protected] Payments (250 SEK) can be made to our bank account: Jan Nilsson Swedbank (Föreningssparbanken) Smultronvägen 4 Storgatan, S 293 00 Olofström, Sweden 457 31 TANUMSHEDE SWIFT: SWEDSESS 0525-20972 IBAN no. SE9280000848060140108838 [email protected] Äldre nummer av Svensk Mykologisk Tidskrift Sveriges Mykologiska Förening (inkl. JORDSTJÄRNAN) kan beställas från SMF:s Botaniska Institutionen hemsida www.svampar.se eller från föreningens Göteborgs Universitet kassör. Box 461 Previous issues of Svensk Mykologisk Tidskrift 405 30 Göteborg (incl. -
Species Delimitation and UNITE Species Hypothesis Testing in the Russula Albonigra Species Complex
From White to Black, from Darkness to Light: Species Delimitation and UNITE Species Hypothesis Testing in the Russula Albonigra Species Complex. Ruben De Lange ( [email protected] ) Ghent University https://orcid.org/0000-0001-5328-2791 Slavomír Adamčík Slovak Academy of Sciences Institute of Botany: Botanicky ustav Slovenskej akademie vied Katarína Adamčíkova Slovak Academy of Sciences: Slovenska akademia vied Pieter Asselman Ghent University: Universiteit Gent Jan Borovička Czech Academy of Sciences: Akademie ved Ceske republiky Lynn Delgat Ghent University: Universiteit Gent Felix Hampe Ghent University: Universiteit Gent Annemieke Verbeken Ghent University: Universiteit Gent Research Keywords: Basidiomycota, Ectomycorrhizal fungi, New species, Phylogeny, Russulaceae, Russulales, subg. Compactae, Integrative taxonomy, Typication Posted Date: December 8th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-118250/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at IMA Fungus on August 2nd, 2021. See the published version at https://doi.org/10.1186/s43008-021-00064-0. Page 1/64 Abstract Russula albonigra is considered a well-known species, morphologically delimited by the context of the basidiomata that is blackening without intermediate reddening, and the menthol-cooling taste of the lamellae. It is supposed to have a broad ecological amplitude and a large distribution area. A thorough molecular analysis based on four nuclear markers (ITS, LSU, RPB2 and TEF1-α) shows this traditional concept of R. albonigra s.l. represents a species complex consisting of at least ve European, three North-American and one Chinese species. -
Suomen Helttasienten Ja Tattien Ekologia, Levinneisyys Ja Uhanalaisuus
Suomen ympäristö 769 LUONTO JA LUONNONVARAT Pertti Salo, Tuomo Niemelä, Ulla Nummela-Salo ja Esteri Ohenoja (toim.) Suomen helttasienten ja tattien ekologia, levinneisyys ja uhanalaisuus .......................... SUOMEN YMPÄRISTÖKESKUS Suomen ympäristö 769 Pertti Salo, Tuomo Niemelä, Ulla Nummela-Salo ja Esteri Ohenoja (toim.) Suomen helttasienten ja tattien ekologia, levinneisyys ja uhanalaisuus SUOMEN YMPÄRISTÖKESKUS Viittausohje Viitatessa tämän raportin lukuihin, käytetään lukujen otsikoita ja lukujen kirjoittajien nimiä: Esim. luku 5.2: Kytövuori, I., Nummela-Salo, U., Ohenoja, E., Salo, P. & Vauras, J. 2005: Helttasienten ja tattien levinneisyystaulukko. Julk.: Salo, P., Niemelä, T., Nummela-Salo, U. & Ohenoja, E. (toim.). Suomen helttasienten ja tattien ekologia, levin- neisyys ja uhanalaisuus. Suomen ympäristökeskus, Helsinki. Suomen ympäristö 769. Ss. 109-224. Recommended citation E.g. chapter 5.2: Kytövuori, I., Nummela-Salo, U., Ohenoja, E., Salo, P. & Vauras, J. 2005: Helttasienten ja tattien levinneisyystaulukko. Distribution table of agarics and boletes in Finland. Publ.: Salo, P., Niemelä, T., Nummela- Salo, U. & Ohenoja, E. (eds.). Suomen helttasienten ja tattien ekologia, levinneisyys ja uhanalaisuus. Suomen ympäristökeskus, Helsinki. Suomen ympäristö 769. Pp. 109-224. Julkaisu on saatavana myös Internetistä: www.ymparisto.fi/julkaisut ISBN 952-11-1996-9 (nid.) ISBN 952-11-1997-7 (PDF) ISSN 1238-7312 Kannen kuvat / Cover pictures Vasen ylä / Top left: Paljakkaa. Utsjoki. Treeless alpine tundra zone. Utsjoki. Kuva / Photo: Esteri Ohenoja Vasen ala / Down left: Jalopuulehtoa. Parainen, Lenholm. Quercus robur forest. Parainen, Lenholm. Kuva / Photo: Tuomo Niemelä Oikea ylä / Top right: Lehtolohisieni (Laccaria amethystina). Amethyst Deceiver (Laccaria amethystina). Kuva / Photo: Pertti Salo Oikea ala / Down right: Vanhaa metsää. Sodankylä, Luosto. Old virgin forest. Sodankylä, Luosto. Kuva / Photo: Tuomo Niemelä Takakansi / Back cover: Ukonsieni (Macrolepiota procera). -
The Current Status of the Family Russulaceae in the Uttarakhand Himalaya, India
Mycosphere Doi 10.5943/mycosphere/3/4/12 The current status of the family Russulaceae in the Uttarakhand Himalaya, India Joshi S1*, Bhatt RP1, and Stephenson SL2 1Departmet of Botany and Microbiology, H. N. B. Garhwal University, Srinagar Garhwal, Uttarakhand 246 174, India – [email protected], [email protected] 2Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701, USA – [email protected] Joshi S, Bhatt RP, Stephenson SL 2012 – The current status of the family Russulaceae in the Uttarakhand Himalaya, India. Mycosphere 3(4), 486–501, Doi 10.5943 /mycosphere/3/4/12 The checklist provided herein represents a current assessment of what is known about the ectomycorrizal family Russulaceae from the Uttarakhand Himalaya. The checklist includes 105 taxa, 55 of which belong to the genus Lactarius Pers. ex S.F. Gray and 50 are members of the genus Russula Pers. ex S.F. Gray. Eleven of the species of Lactarius (listed as Lactarius sp. 1 to 11 in the checklist) are apparently new to science and have yet to be formally described. Key words – Ectomycorrhizal fungi – Himalayan Mountains – Lactarius – Russula – Taxonomy Article Information Received 24 July 2012 Accepted 31 July 2012 Published online 28 August 2012 *Corresponding author: Sweta Joshi – e-mail – [email protected] Introduction crucial niche relationships of the various The family Russulaceae is one of the elements that make up the forest biota, largest ectomycorrhizal families in the order including the macrofungi themselves. The Agaricales. The family was established by large gap that exists with respect to our Roze (1876) as the Russulariees (non. -
Russula Albonigra
De Lange et al. IMA Fungus (2021) 12:20 https://doi.org/10.1186/s43008-021-00064-0 IMA Fungus RESEARCH Open Access Enlightening the black and white: species delimitation and UNITE species hypothesis testing in the Russula albonigra species complex Ruben De Lange1* , Slavomír Adamčík2 , Katarína Adamčíkova3 , Pieter Asselman1 , Jan Borovička4,5 , Lynn Delgat1,6 , Felix Hampe1 and Annemieke Verbeken1 ABSTRACT Russula albonigra is considered a well-known species, morphologically delimited by the context of the basidiomata blackening without intermediate reddening, and the menthol-cooling taste of the lamellae. It is supposed to have a broad ecological range and a large distribution area. A thorough molecular analysis based on four nuclear markers (ITS, LSU, RPB2 and TEF1-α) shows this traditional concept of R. albonigra s. lat. represents a species complex consisting of at least five European, three North American, and one Chinese species. Morphological study shows traditional characters used to delimit R. albonigra are not always reliable. Therefore, a new delimitation of the R. albonigra complex is proposed and a key to the described European species of R.subgen.Compactae is presented. A lectotype and an epitype are designated for R. albonigra and three new European species are described: R. ambusta, R. nigrifacta, and R. ustulata. Different thresholds of UNITE species hypotheses were tested against the taxonomic data. The distance threshold of 0.5% gives a perfect match to the phylogenetically defined species within the R. albonigra complex. Publicly available sequence data can contribute to species delimitation and increase our knowledge on ecology and distribution, but the pitfalls are short and low quality sequences. -
<I>Rickenella Fibula</I>
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 8-2017 Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte- associate in the Hymenochaetales Hailee Brynn Korotkin University of Tennessee, Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Part of the Evolution Commons Recommended Citation Korotkin, Hailee Brynn, "Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte-associate in the Hymenochaetales. " Master's Thesis, University of Tennessee, 2017. https://trace.tennessee.edu/utk_gradthes/4886 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Hailee Brynn Korotkin entitled "Stable isotopes, phylogenetics, and experimental data indicate a unique nutritional mode for Rickenella fibula, a bryophyte-associate in the Hymenochaetales." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Master of Science, with a major in Ecology -
A Compilation for the Iberian Peninsula (Spain and Portugal)
Nova Hedwigia Vol. 91 issue 1–2, 1 –31 Article Stuttgart, August 2010 Mycorrhizal macrofungi diversity (Agaricomycetes) from Mediterranean Quercus forests; a compilation for the Iberian Peninsula (Spain and Portugal) Antonio Ortega, Juan Lorite* and Francisco Valle Departamento de Botánica, Facultad de Ciencias, Universidad de Granada. 18071 GRANADA. Spain With 1 figure and 3 tables Ortega, A., J. Lorite & F. Valle (2010): Mycorrhizal macrofungi diversity (Agaricomycetes) from Mediterranean Quercus forests; a compilation for the Iberian Peninsula (Spain and Portugal). - Nova Hedwigia 91: 1–31. Abstract: A compilation study has been made of the mycorrhizal Agaricomycetes from several sclerophyllous and deciduous Mediterranean Quercus woodlands from Iberian Peninsula. Firstly, we selected eight Mediterranean taxa of the genus Quercus, which were well sampled in terms of macrofungi. Afterwards, we performed a database containing a large amount of data about mycorrhizal biota of Quercus. We have defined and/or used a series of indexes (occurrence, affinity, proportionality, heterogeneity, similarity, and taxonomic diversity) in order to establish the differences between the mycorrhizal biota of the selected woodlands. The 605 taxa compiled here represent an important amount of the total mycorrhizal diversity from all the vegetation types of the studied area, estimated at 1,500–1,600 taxa, with Q. ilex subsp. ballota (416 taxa) and Q. suber (411) being the richest. We also analysed their quantitative and qualitative mycorrhizal flora and their relative richness in different ways: woodland types, substrates and species composition. The results highlight the large amount of mycorrhizal macrofungi species occurring in these mediterranean Quercus woodlands, the data are comparable with other woodland types, thought to be the richest forest types in the world. -
Publication 26. Biological Series 5 the AGARICACEAE of MICHIGAN
MICHIGAN GEOLOGICAL AND BIOLOGICAL SURVEY tubaeformis Fr. ........................................18 umbonatus Fr. .........................................19 Publication 26. Biological Series 5 aurantiacus Fr..........................................19 THE AGARICACEAE OF MICHIGAN Marasmieae .......................................................19 BY Trogia Fr.........................................................19 C. H. KAUFFMAN crispa Fr...................................................19 VOL. I alni Pk......................................................20 Schizophyllum Fr............................................20 TEXT commune Fr. ...........................................20 PUBLISHED AS A PART OF THE ANNUAL REPORT OF THE Panus Fr.........................................................20 BOARD OF GEOLOGICAL AND BIOLOGICAL SURVEY FOR Key to the species.......................................21 1918. Panus strigosus B. & C. .................................21 rudis Fr. ...................................................21 LANSING, MICHIGAN WYNKOOP HALLENBECK CRAWFORD CO., STATE PRINTERS torulosus Fr..............................................22 1918 stipticus Fr. ..............................................22 angustatus Berk.......................................22 salicinus Pk..............................................23 Contents Lentinus Fr. ....................................................23 Key to the species.......................................23 Letters of Transmittal, R. C. Allen, A. G. Ruthven. ...... 4 -
The Subsection Compactae of Russula1
THE SUBSECTION COMPACTAE OF RUSSULA1 ROBER.T L. SHAFFER2 University Herbarium, The University of Michigan, Ann Arbor Within the Section Compactae of Russula (Agaricales), whose members are characterized by firm, compact flesh and numerous lamellulae, the Subsection Compactae comprises several closely related species whose basidiocarps, although whitish when young, become brown to black in age or when cut or bruised. Four species of the subsection, B. albonigra, R. adusta, R. nigricans, anid I. densifolia, were known in the nineteenth century. The differences used to sepa- rate these four are whether the basidiocarps, wheni bruised, become blackish directly (R. alboanigra. and R. adusta) or become reddish first (R. nigricans and R. densifolia), whether the pileus is dry (R. albonigra) or viscid (B. atdusta), and whether the lamellae are distant (R. nigricans) or crowded (R. densifolia). As these species and the others described during the past fifty years were studied more critically, more subtle differences were recognized and employed in taxonomic treatments of the subsection. In the five years that I have been working with the North Americani species of RIussula, it has become obvious that available treatments of Subsection Corm- pactae, as well as of other groups of Russutla, are inadequate. A revision of the subsection based primarily on North Amnerican material is, therefore, presented. Although macroscopic characteristics emphasized in previous treatments are in- corporated here, more emphasis is placed on certain microscopic characteristics, particularly those of the spores and the pileus cuticle. I hope my species descrip- tions and discussions present the idea that some of the species, includinig the four classical ones, cannot be separated absolutely by alny one characteristic or set of characteristics, and that, therefore, one may not be able to identify with certainty every collection encountered.