A Phylogenetic Effect on Strontium Concentrations in Angiosperms Neil Willey ∗, Kathy Fawcett
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Phenological Responses to Climate in the Alberta Native Flora: Herbarium Specimens Reveal Differential Responsiveness Between Species in Mesic and Xeric Habitats
University of Calgary PRISM: University of Calgary's Digital Repository Graduate Studies The Vault: Electronic Theses and Dissertations 2019-03-01 Phenological responses to climate in the Alberta native flora: Herbarium specimens reveal differential responsiveness between species in mesic and xeric habitats Porto, Cassiano Porto, C. (2019). Phenological responses to climate in the Alberta native flora: Herbarium specimens reveal differential responsiveness between species in mesic and xeric habitats (Unpublished master's thesis). University of Calgary, Calgary, AB. http://hdl.handle.net/1880/109929 master thesis University of Calgary graduate students retain copyright ownership and moral rights for their thesis. You may use this material in any way that is permitted by the Copyright Act or through licensing that has been assigned to the document. For uses that are not allowable under copyright legislation or licensing, you are required to seek permission. Downloaded from PRISM: https://prism.ucalgary.ca UNIVERSITY OF CALGARY Phenological responses to climate in the Alberta native flora: Herbarium specimens reveal differential responsiveness between species in mesic and xeric habitats by Cassiano Porto A THESIS SUBMITTED TO THE FACULTY OF GRADUATE STUDIES IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE GRADUATE PROGRAM IN BIOLOGICAL SCIENCES CALGARY, ALBERTA MARCH, 2019 © Cassiano Porto 2019 UNIVERSITY OF CALGARY Phenological responses to climate in the Alberta native flora: Herbarium specimens reveal differential responsiveness between species in mesic and xeric habitats by Cassiano Porto A THESIS SUBMITTED TO THE FACULTY OF GRADUATE STUDIES IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE GRADUATE PROGRAM IN BIOLOGICAL SCIENCES Research Supervisor: Dr. -
Leaf Anatomical Study of Gypsophila (Caryophyllaceae) and Allied Genera in Iran and Its Taxonomical Implication
IRANIAN JOURNAL OF BOTANY 24 (2), 2018 DOI: 10.22092/ijb.2018.122088.1203 LEAF ANATOMICAL STUDY OF GYPSOPHILA (CARYOPHYLLACEAE) AND ALLIED GENERA IN IRAN AND ITS TAXONOMICAL IMPLICATION E. Amini, Sh. Zarre & M. Assadi Received 2018. 05. 30; accepted for publication 2018. 10. 17 Amini, E., Zarre, Sh. & Assadi, M. 2018. 12. 30: Leaf anatomical study of Gypsophila (Caryophyllaceae) and allied genera in Iran and its taxonomical implication. -Iran. J. Bot. 24 (2): 138-155. Tehran. Aanatomical features as revealed from cross-sections of leaf blades and midribs in 21 taxa of Gypsophila representing its currently recognized seven sections distributed in Iran as well as four species of Saponaria, two species of Allochrusa and one species of Ankyropetalum as its closely related genera are examined. In total nine quantitative and five qualitative characters were selected and measured. The most important characters include general shape of leaves (assessed only for narrow leaves) in transverse section, type of mesophyll (dorsi-ventral vs. isobilateral), thickness of sclerenchyma surrounding the vascular bundles, shape of central vascular bundle, number of parenchyma layers in midrib, thickness (number of layers) and structure of mesophyll, density and distribution of druses. In general, leaf anatomy does not provide any unique feature supporting the separation of genera Ankyropetalum and Allochrusa from Gypsophila. The number of spongy layers provides support at least for separation of Gypsophila (more than two layers) from most species of Saponaria (only one layer). Our results show that leaf anatomical features provide reliable evidence for subgeneric classification of Gypsophila and could be taxonomically valuable. Elham Amini (correspondence< [email protected] >), Shahin Zarre, Centre of Excellence in Phylogeny, and Department of Plant Science, School of Biology, College of Science, University of Tehran, P. -
The Pigmentation of the Corolla Certainly
Neerl. 349-351. Acta Bot. 26(4), August 1977, p. BRIEF COMMUNICATIONS Some observations on the anthocyanins in the flowers of Anthyllis vulneraria L. (Legumi- nosae - Fabaceae) * A.A. Sterk P. de Vlaming** and A.C. Bolsman-Louwen* * ** Hugo de Vries-Laboratorium, Genetisch Instituut, Universiteit van Amsterdam Anthyllis vulnerariashows an appreciable variation in the colour of the corolla which ranges from pale yellow to a deep purplish red. Also the calyx often has purple teeth. Most of the subspecies of A. vulneraria (16 out of 24) occur in the Medi- in the N. and About the terranean area, more particularly W. parts. moiety of these subspecies has purple or reddish flowers; the other halfpredominantly central with yellow or yellowish ones. In Europe 4 subspecies yellow corollas variants In N. also 4 found occur; red-flowered are rare. Europe subspecies are red-flowered vulneraria vulneraria of which one has a variety: A. ssp. var. coccinea (Cullen 1968). The red floral colour is predominantly found in the Mediterraneanarea. According to Becker (1912) the red-floweredpopulations are mostly encountered in drierand warmer climates; the yellow-flowered ones being more dominantin the colderand moister regions. the of corolla Observations by Couberc (1971) suggest that pigmentation the is strongly influenced by environmental conditions and certainly does not always provide a reliable taxonomic characteristic. The anthocyanin pigments of Anthyllis had not been studied previously. The flavonols have been inves- tigated by Gonnet & Jay (1972). In this study flowers of 12 populations of A. vulneraria were studied and flowers of one population of A. montana. The results are shown in the table. -
Erigenia : Journal of the Southern Illinois Native Plant Society
ERIGENIA THE LIBRARY OF THE DEC IS ba* Number 13 UNIVERSITY OF ILLINOIS June 1994 ^:^;-:A-i.,-CS..;.iF/uGN SURVEY Conference Proceedings 26-27 September 1992 Journal of the Eastern Illinois University Illinois Native Plant Society Charleston Erigenia Number 13, June 1994 Editor: Elizabeth L. Shimp, U.S.D.A. Forest Service, Shawnee National Forest, 901 S. Commercial St., Harrisburg, IL 62946 Copy Editor: Floyd A. Swink, The Morton Arboretum, Lisle, IL 60532 Publications Committee: John E. Ebinger, Botany Department, Eastern Illinois University, Charleston, IL 61920 Ken Konsis, Forest Glen Preserve, R.R. 1 Box 495 A, Westville, IL 61883 Kenneth R. Robertson, Illinois Natural History Survey, 607 E. Peabody Dr., Champaign, IL 61820 Lawrence R. Stritch, U.S.D.A. Forest Service, Shawnee National Forest, 901 S. Commercial Su, Harrisburg, IL 62946 Cover Design: Christopher J. Whelan, The Morton Arboretum, Lisle, IL 60532 Cover Illustration: Jean Eglinton, 2202 Hazel Dell Rd., Springfield, IL 62703 Erigenia Artist: Nancy Hart-Stieber, The Morton Arboretum, Lisle, IL 60532 Executive Committee of the Society - April 1992 to May 1993 President: Kenneth R. Robertson, Illinois Natural History Survey, 607 E. Peabody Dr., Champaign, IL 61820 President-Elect: J. William Hammel, Illinois Environmental Protection Agency, Springfield, IL 62701 Past President: Jon J. Duerr, Kane County Forest Preserve District, 719 Batavia Ave., Geneva, IL 60134 Treasurer: Mary Susan Moulder, 918 W. Woodlawn, Danville, IL 61832 Recording Secretary: Russell R. Kirt, College of DuPage, Glen EUyn, IL 60137 Corresponding Secretary: John E. Schwegman, Illinois Department of Conservation, Springfield, IL 62701 Membership: Lorna J. Konsis, Forest Glen Preserve, R.R. -
The Vascular Plants of Massachusetts
The Vascular Plants of Massachusetts: The Vascular Plants of Massachusetts: A County Checklist • First Revision Melissa Dow Cullina, Bryan Connolly, Bruce Sorrie and Paul Somers Somers Bruce Sorrie and Paul Connolly, Bryan Cullina, Melissa Dow Revision • First A County Checklist Plants of Massachusetts: Vascular The A County Checklist First Revision Melissa Dow Cullina, Bryan Connolly, Bruce Sorrie and Paul Somers Massachusetts Natural Heritage & Endangered Species Program Massachusetts Division of Fisheries and Wildlife Natural Heritage & Endangered Species Program The Natural Heritage & Endangered Species Program (NHESP), part of the Massachusetts Division of Fisheries and Wildlife, is one of the programs forming the Natural Heritage network. NHESP is responsible for the conservation and protection of hundreds of species that are not hunted, fished, trapped, or commercially harvested in the state. The Program's highest priority is protecting the 176 species of vertebrate and invertebrate animals and 259 species of native plants that are officially listed as Endangered, Threatened or of Special Concern in Massachusetts. Endangered species conservation in Massachusetts depends on you! A major source of funding for the protection of rare and endangered species comes from voluntary donations on state income tax forms. Contributions go to the Natural Heritage & Endangered Species Fund, which provides a portion of the operating budget for the Natural Heritage & Endangered Species Program. NHESP protects rare species through biological inventory, -
Alyssum) and the Correct Name of the Goldentuft Alyssum
ARNOLDIA VE 1 A continuation of the BULLETIN OF POPULAR INFORMATION of the Arnold Arboretum, Harvard University VOLUME 26 JUNE 17, 1966 NUMBERS 6-7 ORNAMENTAL MADWORTS (ALYSSUM) AND THE CORRECT NAME OF THE GOLDENTUFT ALYSSUM of the standard horticultural reference works list the "Madworts" as MANYa group of annuals, biennials, perennials or subshrubs in the family Cru- ciferae, which with the exception of a few species, including the goldentuft mad- wort, are not widely cultivated. The purposes of this article are twofold. First, to inform interested gardeners, horticulturists and plantsmen that this exception, with a number of cultivars, does not belong to the genus Alyssum, but because of certain critical and technical characters, should be placed in the genus Aurinia of the same family. The second goal is to emphasize that many species of the "true" .~lyssum are notable ornamentals and merit greater popularity and cul- tivation. The genus Alyssum (now containing approximately one hundred and ninety species) was described by Linnaeus in 1753 and based on A. montanum, a wide- spread European species which is cultivated to a limited extent only. However, as medicinal and ornamental garden plants the genus was known in cultivation as early as 1650. The name Alyssum is of Greek derivation : a meaning not, and lyssa alluding to madness, rage or hydrophobia. Accordingly, the names Mad- wort and Alyssum both refer to the plant’s reputation as an officinal herb. An infu- sion concocted from the leaves and flowers was reputed to have been administered as a specific antidote against madness or the bite of a rabid dog. -
Supplemental Information.Pdf
SUPPORTING INFORMATION Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary Kevin Vanneste1,2, Guy Baele3, Steven Maere1,2,*, and Yves Van de Peer1,2,4,* 1 Department of Plant Systems Biology, VIB, Ghent, Belgium 2 Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium 3 Department of Microbiology and Immunology, Rega Institute, KU Leuven, Leuven, Belgium 4 Department of Genetics, Genomics Research Institute, University of Pretoria, Pretoria, South Africa *Corresponding authors Yves Van de Peer Steven Maere VIB / Ghent University VIB / Ghent University Technologiepark 927 Technologiepark 927 Gent (9052), Belgium Gent (9052), Belgium Tel: +32 (0)9 331 3807 Tel: +32 (0)9 331 3805 Fax: +32 (0)9 331 3809 Fax: +32 (0)9 331 3809 E-mail: [email protected] E-mail: [email protected] Overview Species grouping topology ................................................ 3 Calibrations and constraints .............................................. 5 Alternative calibrations and constraints ............................ 13 Relative rate tests ............................................................. 27 Re-dating the Pyrus bretschneideri WGD ......................... 30 WGD age estimates from literature ................................... 33 Eschscholzia californica and Acorus americanus ............. 34 2 Species grouping topology In order to date the node joining the homeologous pair, orthogroups were constructed consisting of both homeologs and orthologs from other plant species for which full genome sequence information was available. Different plant species were grouped into ‘species groups’ for which one ortholog was selected and added to the orthogroup, in order to keep the orthogroup topology fixed and to facilitate automation on the one hand, but also to allow enough orthogroups to be constructed on the other hand (see Material and methods). -
Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
Untangling Phylogenetic Patterns and Taxonomic Confusion in Tribe Caryophylleae (Caryophyllaceae) with Special Focus on Generic
TAXON 67 (1) • February 2018: 83–112 Madhani & al. • Phylogeny and taxonomy of Caryophylleae (Caryophyllaceae) Untangling phylogenetic patterns and taxonomic confusion in tribe Caryophylleae (Caryophyllaceae) with special focus on generic boundaries Hossein Madhani,1 Richard Rabeler,2 Atefeh Pirani,3 Bengt Oxelman,4 Guenther Heubl5 & Shahin Zarre1 1 Department of Plant Science, Center of Excellence in Phylogeny of Living Organisms, School of Biology, College of Science, University of Tehran, P.O. Box 14155-6455, Tehran, Iran 2 University of Michigan Herbarium-EEB, 3600 Varsity Drive, Ann Arbor, Michigan 48108-2228, U.S.A. 3 Department of Biology, Faculty of Sciences, Ferdowsi University of Mashhad, P.O. Box 91775-1436, Mashhad, Iran 4 Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 40530 Göteborg, Sweden 5 Biodiversity Research – Systematic Botany, Department of Biology I, Ludwig-Maximilians-Universität München, Menzinger Str. 67, 80638 München, Germany; and GeoBio Center LMU Author for correspondence: Shahin Zarre, [email protected] DOI https://doi.org/10.12705/671.6 Abstract Assigning correct names to taxa is a challenging goal in the taxonomy of many groups within the Caryophyllaceae. This challenge is most serious in tribe Caryophylleae since the supposed genera seem to be highly artificial, and the available morphological evidence cannot effectively be used for delimitation and exact determination of taxa. The main goal of the present study was to re-assess the monophyly of the genera currently recognized in this tribe using molecular phylogenetic data. We used the sequences of nuclear ribosomal internal transcribed spacer (ITS) and the chloroplast gene rps16 for 135 and 94 accessions, respectively, representing all 16 genera currently recognized in the tribe Caryophylleae, with a rich sampling of Gypsophila as one of the most heterogeneous groups in the tribe. -
Lessons from 20 Years of Plant Genome Sequencing: an Unprecedented Resource in Need of More Diverse Representation
bioRxiv preprint doi: https://doi.org/10.1101/2021.05.31.446451; this version posted May 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Lessons from 20 years of plant genome sequencing: an unprecedented resource in need of more diverse representation Authors: Rose A. Marks1,2,3, Scott Hotaling4, Paul B. Frandsen5,6, and Robert VanBuren1,2 1. Department of Horticulture, Michigan State University, East Lansing, MI 48824, USA 2. Plant Resilience Institute, Michigan State University, East Lansing, MI 48824, USA 3. Department of Molecular and Cell Biology, University of Cape Town, Rondebosch 7701, South Africa 4. School of Biological Sciences, Washington State University, Pullman, WA, USA 5. Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA 6. Data Science Lab, Smithsonian Institution, Washington, DC, USA Keywords: plants, embryophytes, genomics, colonialism, broadening participation Correspondence: Rose A. Marks, Department of Horticulture, Michigan State University, East Lansing, MI 48824, USA; Email: [email protected]; Phone: (603) 852-3190; ORCID iD: https://orcid.org/0000-0001-7102-5959 Abstract The field of plant genomics has grown rapidly in the past 20 years, leading to dramatic increases in both the quantity and quality of publicly available genomic resources. With an ever- expanding wealth of genomic data from an increasingly diverse set of taxa, unprecedented potential exists to better understand the evolution and genome biology of plants. -
Conserving Europe's Threatened Plants
Conserving Europe’s threatened plants Progress towards Target 8 of the Global Strategy for Plant Conservation Conserving Europe’s threatened plants Progress towards Target 8 of the Global Strategy for Plant Conservation By Suzanne Sharrock and Meirion Jones May 2009 Recommended citation: Sharrock, S. and Jones, M., 2009. Conserving Europe’s threatened plants: Progress towards Target 8 of the Global Strategy for Plant Conservation Botanic Gardens Conservation International, Richmond, UK ISBN 978-1-905164-30-1 Published by Botanic Gardens Conservation International Descanso House, 199 Kew Road, Richmond, Surrey, TW9 3BW, UK Design: John Morgan, [email protected] Acknowledgements The work of establishing a consolidated list of threatened Photo credits European plants was first initiated by Hugh Synge who developed the original database on which this report is based. All images are credited to BGCI with the exceptions of: We are most grateful to Hugh for providing this database to page 5, Nikos Krigas; page 8. Christophe Libert; page 10, BGCI and advising on further development of the list. The Pawel Kos; page 12 (upper), Nikos Krigas; page 14: James exacting task of inputting data from national Red Lists was Hitchmough; page 16 (lower), Jože Bavcon; page 17 (upper), carried out by Chris Cockel and without his dedicated work, the Nkos Krigas; page 20 (upper), Anca Sarbu; page 21, Nikos list would not have been completed. Thank you for your efforts Krigas; page 22 (upper) Simon Williams; page 22 (lower), RBG Chris. We are grateful to all the members of the European Kew; page 23 (upper), Jo Packet; page 23 (lower), Sandrine Botanic Gardens Consortium and other colleagues from Europe Godefroid; page 24 (upper) Jože Bavcon; page 24 (lower), Frank who provided essential advice, guidance and supplementary Scumacher; page 25 (upper) Michael Burkart; page 25, (lower) information on the species included in the database. -
Phylogenetic Relationships in Korean Elaeagnus L. Based on Nrdna ITS Sequences
Korean J. Plant Res. 27(6):671-679(2014) Print ISSN 1226-3591 http://dx.doi.org/10.7732/kjpr.2014.27.6.671 Online ISSN 2287-8203 Original Research Article Phylogenetic Relationships in Korean Elaeagnus L. Based on nrDNA ITS Sequences OGyeong Son1, Chang Young Yoon2 and SeonJoo Park1* 1Department of Life Science, Yeungnam University, Gyeongsan 712-749, Korea 2Department of Biotechnology, Shingyeong University, Hwaseon 445-741, Korea Abstract - Molecular phylogenetic analyses of Korean Elaeagnus L. were conducted using seven species, one variety, one forma and four outgroups to evaluate their relationships and phylogeny. The sequences of internal transcribed spacer regions in nuclear ribosomal DNA were employed to construct phylogenetic relationships using maximum parsimony (MP) and Bayesian analysis. Molecular phylogenetic analysis revealed that Korean Elaeagnus was a polyphyly. E. umbellata var. coreana formed a subclade with E. umbellata. Additionally, the genetic difference between E. submacrophylla and E. macrophylla was very low. Moreover, E. submacrophylla formed a branch from E. macrophylla, indicating that E. submacrophylla can be regarded as a variety. However, several populations of this species were not clustered as a single clade; therefore, further study should be conducted using other molecular markers. Although E. glabra f. oxyphylla was distinct in morphological characters of leaf shape with E. glabra. But E. glabra f. oxyphylla was formed one clade by molecular phylogenetic with E. glabra. Additionally, this study clearly demonstrated that E. pungens occurs in Korea, although it was previously reported near South Korea in Japan and China. According to the results of ITS regions analyses, it showed a resolution and to verify the relationship between interspecies of Korean Elaeagnus.