An Update on Nucleocytoplasmic Transport in Apoptosis

Total Page:16

File Type:pdf, Size:1020Kb

An Update on Nucleocytoplasmic Transport in Apoptosis Commuting (to) suicide: An update on nucleocytoplasmic transport in apoptosis Patricia Grote, Karin Schaeuble, Elisa Ferrando-May" Ulliversity of KOllstanz, Departmellt of Biology, Molecular Toxicology, P.O. Box X911, D 78457 KOllstall z, GermallY Abstract Commuting is the process of travelling between a place of residence and a place of work. In the context of biology, this expression evokes the continuous movement of macromolecules between different compartments of a eukaryotic cell. Transport in and out of the nucleus is a major example of intracellular commuting. This article discusses recent findings that substantiate the emerging link between nucleocytoplasmic transport and the signalling and execution of cell death. KeYlVords: Caspase; Nuclear pore; DNA damage; Nuclear per~eability; Cellular stress; Ran; NFKB; GAPDH; PIDD; Virus Interorganellar cross-talk has become a fundamental of the nuclear pore complex (NPC) I in dying cells, (2) issue in the field of cell death by apoptosis. Distinct cel­ mechanisms of nuclear uptake/release of individual apo­ lular organelles and compartments such as the mitochon­ ptosis mediators, and (3) stress-induced changes in global dria, the endoplasmic reticulum, the nucleus and the transport activity. The present mini review highlights plasma membrane can be the source of primary signals some recent results related to each of these three topics. that lead to cell killing [1,2]. Conversely, downstream For a more detailed introduction into the molecular effectors of cell death, primarily caspases, act at different biology of the NPC and the mechanisms of nuclear subcellular sites to accomplish the dismantling of cellular transport, several excellent review articles are available structures. This dual role as initiator and victim of death (e.g. [5 7]). signalling cascades is probably best exemplified by the cell nucleus, being on the one hand the origin of the cell's response to DNA damage, and on the other hand, Stress- and pathogen-induced NPC dysfunction a major substrate for the demolishing activity of the apoptotic execution machinery. Thus, the apparatus gov­ A recent comprehensive analysis of the fate of the NPC erning the movement of molecules across the nuclear in cell death by apoptosis [8] has confirmed and extended membrane has the potential to influence the cell death previous data on the caspase-mediated degradation of process on multiple levels. In fact, connections between nuclear pore proteins [8 II]. According to these studies, nucleocytoplasmic transport and apoptosis have emerged both peripherally located nuclear pore proteins (Nups) as in the past and have been summarized in two recent arti­ well as two Nups within the NPC core are degraded, while cles [3,4]. In general, studies in the field have developed the overall structure of the pore remains intact. This is along three lines: (I) structural and functional alterations I Abbreviations used: NPC, nuclear pore complex; PARP, poly (ADP) ribose polymerase; AIF, apoptosis inducing factor; GAPDH, glyceralde • Corresponding author. Fax: + 49 7531 884033. hyde 3 phosphate dehydrogenase; PIDD, p53 induced protein with a Email address:[email protected] (E. Ferrando May). death domain; NO, nitric oxide; CA V, chicken anaemia virus. 157 thought to cause the collapse of the permeability barrier as disruption of the PARP-l gene, confer neuroprotection and to inhibit active transport, but conclusive data on in cellular and animal models of ischemia and stroke the functional consequences of caspase-mediated NPC [27,28]. Two papers have now pinpointed the molecular cleavage are still lacking. Other studies have proposed that mechanism of PAR-mediated cytotoxicity: the PAR poly­ NPC permeability may be altered in cells committed to die mer itself acts as a death signal causing neuronal demise in the absence of any apparent disruption of nuclear pore · when its concentration is increased either by transfection proteins [1 2,13] suggesting the existence of other mecha­ or by downregulating the expression of PARG, the glyco­ nisms of NPC dysfunction. hydrolase responsible for PAR catabolism [29]. A key Examples for such alternative, caspase-independent mediator of PAR-induced cell death is Apoptosis-Inducing pathways for breaking the nucleocytoplasmic barrier come Factor (AI F), a mitochondrial flavoprotein which was pre­ from virus-infected cells. The poliovirus 2A protease, for viously shown to move to the nucleus during apoptosis and example, mediates, directly or indirectly, the cleavage of trigger chromatin condensation as well as high-molecular the nucleoporins Nupl53 and p62. Most remarkably and weight DNA fragmentation [30]. In the absence of in contrast to what has been reported for apoptotic cells, PARP-l, the mitochondrial release of AIF is abrogated virus infection is accompanied by structural disruption of and cells are protected from death triggered by DNA dam­ the NPC as shown by electron microscopy [14 16]. In age, oxidative stress and excitotoxic insults [31]. Dawson yeast, degradation of nucleoporins as a consequence of oxi­ and co-workers have now demonstrated that the PAR dative insult was shown to be mediated by Pep4p, a cathep­ polymer acts as an AIF releasing factor [32]. In agreement sin 0 homolog [17]. Here again, nuclear envelope with its role as nuclear-mitochondrial messenger, PAR permeability increased prior to the degradat'ion of nucleo­ appears in the cytosol and at the mitochondria of cortical porins, supporting the notion that NPC function may be neurons after NMDA receptor stimulation. An open and altered without damage to its components. In fact, these very relevant question arising in this context concerns the observations are consistent with the notion of the NPC mechanism of PAR's nuclear extrusion. Only PAR poly­ as a dynamic, adaptive channel, whose conformation and mers of at least 60 ADP-ribose units, corresponding to a functional properties are highly sensitive to changes in cel­ minimum molecular weight of 33.6 kDa, display significant lular activity [5]. Considering the diversity of pathways toxicity. Larger polymers can arise in vivo as a consequence engaged by pathogens, by environmental noxa and by of PARP-l activation [33,34]. In addition, it is not yet clear developmental cues, all potentially culminating in cell whether the deadly polymers exit the nucleus as free mole­ death, it is not surprising to observe variations in the mode cules or associated with a (protein) carrier. In any case, of NE permeabilization depending on the death model sys­ propagation of this signal is likely to be restricted by the tem. Beside proteases, alterations of NPC structure and size exclusion limit of the NPC which under normal condi­ function during apoptosis could arise e.g. via calcium tions is in the range of about 40 kDa. Therefore, small vari­ [18], or hydrophobic compounds such as proapoptotic lipid ations in NPC structure could have a huge impact on the mediators [19,20] or the actin cytoskeleton [21,22]. The fact efficiency of PAR signalling to the mitochondria. It is inter­ that multiple and possibly overlapping pathways may lead esting in this respect that an increase in NPC permeability to the breakdown of the nucleocytoplasmic barrier in has been recently observed in cerebellar granule neurons apoptosis marks a distinction between this process and undergoing cell death by excitotoxicity (Bano, D., and . mitotic nuclear envelope disassembly, the latter ensuing Nicotera P., pers. communication) . from a specifically triggered, precisely orchestrated, and unique sequence of signalling events [23]. p53-induced protein with a death domain (PIDD) Apoptotic players moving in and out of the nucleus PlOD is a p53-inducible gene encoding a novel death domain-containing protein [35,36]. Initially characterized Poly-( ADP)-ribose (PAR) as a proapoptotic factor involved in the activation of cas­ pase-2 after genotoxic damage [37,38], PlOD was subse­ PAR is one of the most interesting newcomers to the quently determined to participate in cell survival via the growing family of molecules that commute from and to NFK-B pathway [39]. The molecular basis for these oppos­ the nucleus in cell death. Protein modification by poly­ ing roles of PlOD lies in the interaction with different (ADP)-ribose results from the activity of the poly-(ADP)­ adaptors resulting in the formation of two distinct macro­ ribose polymerase (PARP) family of enzymes. It has been molecular complexes, also termed PIDDosomes: RAIDD initially described as an immediate response to DNA dam­ is essential for building the platform for activation of cas­ age involved in the activation of several DNA repair path­ pase-2, while RIPI bridges the interaction of PlOD with ways. Additionally, and in particular in the nervous NEMO, a regulatory subunit of the IkB kinase complex. system, poly-(ADP)-ribosylation has been shown to medi­ The latter results in augmented SUMO-modification of ate cell injury in response to ischemia and oxidative stress NEMO and subsequent activation of NFK-B which then (for reviews see [24 26]) . Pharmacological inhibitors of triggers the expression of antiapoptotic genes (for review PARP-l, the founding member of the PARP family, as well see also [40]). The activity of PlOD as a molecular switch 158 between life and death is controlled by autoproteolysis and primarily in the nucleus [46]. As demonstrated by recently by the nucleocytoplasmic distribution of PIDD fragments, published heterokaryon experiments [47], Apoptin is a bona as described by a recent paper from J. Tschopp's group fide nucleocytoplasmic shuttling protein possessing signals [41]. According to this model, PIDD is cleaved by autopro­ for nuclear import (NLS) and export (NES). Transformed teolysis in two fragments with distinct functions: PIDD-C, cells display a cellular activity which negatively regulates which is generated by an initial autoproteolytic step and the NES and favours the NLS, resulting in nuclear accumu­ PIDD-CC a shorter fragment, whose formation requires lation. Phosphorylation of a threonine residue adjacent to a second, delayed cleavage event.
Recommended publications
  • FAK Nuclear Export Signal Sequences
    FEBS Letters 582 (2008) 2402–2406 FAK nuclear export signal sequences Valeria Ossovskayaa,1, Ssang-Taek Limb, Nobuyuki Otac, David D. Schlaepferb, Dusko Ilicc,d,* a Department of Anatomy, University of California San Francisco, San Francisco, CA, USA b Department of Reproductive Medicine, University of California, San Diego, CA, USA c A-cube Inc., Burlingame, CA, USA d Department of Cell and Tissue Biology, University of California San Francisco, San Francisco, CA, USA Received 13 April 2008; revised 28 May 2008; accepted 1 June 2008 Available online 10 June 2008 Edited by Varda Rotter accumulation. R177/R178A mutations also prevented FERM Abstract Ubiquitously expressed focal adhesion kinase (FAK), a critical component in transducing signals from sites of cell con- nuclear localization [12]. tacts with extracellular matrix, was named after its typical local- Since it is found in both cytoplasm and nucleus, FAK obvi- ization in focal adhesions. A nuclear localization of FAK has ously has to have a mechanism that enables nucleocytoplasmic been also reported and its scaffolding role in nucleus and require- shuttling. Leucine-rich nuclear export signal (NES) sequences ment for p53 ubiquitination were only recently described. often mediate protein export from the nucleus to the cyto- Whereas FAK nuclear localization signal (NLS) was found in plasm [13–16]. The first NES were identified in human immu- F2 lobe of FERM domain, nuclear export signal (NES) nodeficiency virus, type I-coded Rev protein [17] and protein sequences have not been yet determined. Here we demonstrate kinase A inhibitor of cAMP-dependent protein kinase [18]. that FAK has two NES sequences, NES1 in F1 lobe of FERM NES sequences consist of 4–5 hydrophobic residues within a domain and NES2 in kinase domain.
    [Show full text]
  • Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins
    International Journal of Molecular Sciences Article Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins M. Quadir Siddiqui 1,† , Maulik D. Badmalia 1,† and Trushar R. Patel 1,2,3,* 1 Alberta RNA Research and Training Institute, Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive, Lethbridge, AB T1K 3M4, Canada; [email protected] (M.Q.S.); [email protected] (M.D.B.) 2 Department of Microbiology, Immunology and Infectious Disease, Cumming School of Medicine, University of Calgary, 3330 Hospital Drive, Calgary, AB T2N 4N1, Canada 3 Li Ka Shing Institute of Virology, University of Alberta, Edmonton, AB T6G 2E1, Canada * Correspondence: [email protected] † These authors contributed equally to the work. Abstract: Members of the human Zyxin family are LIM domain-containing proteins that perform critical cellular functions and are indispensable for cellular integrity. Despite their importance, not much is known about their structure, functions, interactions and dynamics. To provide insights into these, we used a set of in-silico tools and databases and analyzed their amino acid sequence, phylogeny, post-translational modifications, structure-dynamics, molecular interactions, and func- tions. Our analysis revealed that zyxin members are ohnologs. Presence of a conserved nuclear export signal composed of LxxLxL/LxxxLxL consensus sequence, as well as a possible nuclear localization signal, suggesting that Zyxin family members may have nuclear and cytoplasmic roles. The molecular modeling and structural analysis indicated that Zyxin family LIM domains share Citation: Siddiqui, M.Q.; Badmalia, similarities with transcriptional regulators and have positively charged electrostatic patches, which M.D.; Patel, T.R.
    [Show full text]
  • Nucleocytoplasmic Transport in Apoptosis
    Nucleocytoplasmic transport in apoptosis E Ferrando-May*,1 Introduction 1 Molecular Toxicology Group, Faculty of Biology, University of Konstanz, PO The separation of the nucleus and the cytoplasm is the Box X911, 78457 Konstanz, Germany defining feature of eukaryotic cells and is achieved by the * Corresponding author: E Ferrando-May; Tel: þ 49 7531 884054; nuclear envelope, a double-membrane system of highly Fax: þ 49 7531 884033; E-mail: [email protected] selective permeability. Interchange of material between these two compartments occurs through dedicated transport chan- nels perforating the nuclear envelope, the nuclear pore complexes (NPCs). These are elaborate supramolecular structures consisting of about 30 different proteins, most of Abstract which are termed nucleoporins (Nups). The composition and structure of the NPC have been analysed in detail by a The apoptotic demolition of the nucleus is accomplished by combination of proteomics and electron microscopy ap- diverse proapoptotic factors, most of which are activated in proaches both in yeast and vertebrates, leading to a refined the cytoplasm and gain access to the nucleoplasm during the view of its molecular architecture. Essentially, the NPC is cell death process. The nucleus is also the main target for composed of three substructures of eight-fold rotational genotoxic insult, a potent apoptotic trigger. Signals generated symmetry: the cytoplasmic fibrils, the central framework, in the nucleus by DNA damage have to propagate to all and the nuclear basket (Figure 1). In the central framework, cellular compartments to ensure the coordinated execution of Nups form distinct subcomplexes which are arranged cell demise. The nucleocytoplasmic shuttling of signalling symmetrically with respect to the plane of the nuclear and execution factors is thus an integral part of the apoptotic envelope and enclose the central pore channel.
    [Show full text]
  • Multiple Roles of Phosphoinositide-Specific Phospholipase C Isozymes
    BMB reports Mini Review Multiple roles of phosphoinositide-specific phospholipase C isozymes Pann-Ghill Suh1,*, Jae-Il Park1, Lucia Manzoli2, Lucio Cocco2, Joanna C. Peak3, Matilda Katan3, Kiyoko Fukami4, Tohru Kataoka5, Sanguk Yun1 & Sung Ho Ryu1 1Division of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Korea, 2Cellular Signaling Laboratory, Department of Anatomical Sciences, University of Bologna, Via Irnerio, 48 I-40126, Bologna, Italy, 3Cancer Research UK Centre for Cell and Molecular Biology, Chester Beatty Laboratories, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK, 4Laboratory of Genome and Biosignal, Tokyo University of Pharmacy and Life Science, 1432-1 Horinouchi, Hachioji, 192-0392 Tokyo, Japan, 5Division of Molecular Biology, Department of Biochemistry and Molecular Biology, Kobe University Graduate School of Medicine, Chuo-ku, Kobe, Japan Phosphoinositide-specific phospholipase C is an effector mole- cellular calcium release (1-3; Fig. 1a). cule in the signal transduction process. It generates two sec- The first evidence of PLC activity was suggested by Hokin et ond messengers, inositol-1,4,5-trisphosphate and diacylglycer- al. in 1953 who reported specific hydrolysis of phospholipids ol from phosphatidylinositol 4,5-bisphosphate. Currently, thir- in pigeon’s pancreas slices after cholinergic stimulation (4). teen mammal PLC isozymes have been identified, and they are The authors showed that the enhanced turnover of phosphor- divided into six groups: PLC-β, -γ, -δ, -ε, -ζ and -η. Sequence ylinositol groups of phosphatidylinositol occurred in cells as a analysis studies demonstrated that each isozyme has more response to a variety of stimuli. In 1983, Streb et al.
    [Show full text]
  • Exploring Machine Learning Methods for Nuclear Export Sequence Identification
    Exploring Machine Learning Methods for Nuclear Export Sequence Identification A Major Qualifying Project Report Submitted to the Faculty Of the WORCESTER POLYTECHNIC INSTITUTE In partial fulfillment of the requirements for the Degree of Bachelor of Science ______________________________ Erin Conneilly Advisors: ______________________________ Professor Destin Heilman (CBC) ______________________________ Professor Rodica Neamtu (CS) Abstract The goal of this project is to design and implement a user-friendly machine learning tool that can be applied to the classification of polypeptides to find functional nuclear export sequences (NESs). This tool incorporates an API that takes advantage of support vector machines and can be expanded to include other models. Because NESs have been found to have consistent structure, structural data is incorporated into the model to increase confidence. This report is accompanied by a manual that instructs users on how to use the tool. 1 Table of Contents Abstract 1 Table of Contents 2 Table of Figures 3 Table of Tables 3 Acknowledgements 4 Introduction 5 Project Motivation 5 Problem Statement 5 Background 6 Section 1: Intracellular Transport 6 Section 2: Nuclear Export Sequence Structure 8 Section 3: Existing Prediction Methods 9 Section 4: Machine Learning Techniques 9 4.1 Recurrent Neural Networks (RNNs) 10 4.2 Nuclear Export Sequences as Time Series 10 4.3 Autoregressive Integrated Moving Average Model (ARIMA) 11 4.4 One-Class Support Vector Machines (OC SVM) 11 4.5 Scikit-Learn 13 Tool Overview and
    [Show full text]
  • Subcellular Localization of Crma: Identification of a Novel Leucine-Rich
    Biochem. J. (2003) 373, 251–259 (Printed in Great Britain) 251 Subcellular localization of CrmA: identification of a novel leucine-rich nuclear export signal conserved in anti-apoptotic serpins Jose A. RODRIGUEZ1,Simone W. SPAN, Frank A. E. KRUYT and Giuseppe GIACCONE Department of Medical Oncology, VU University Medical Center, HV1081 Amsterdam, The Netherlands The cowpox virus-encoded anti-apoptotic protein cytokine flanking the NES contribute to the CRM1-dependent nuclear response modifier A (CrmA) is a member of the serpin family export of CrmA. Although YFP-tagged CrmA is primarily located that specifically inhibits the cellular proteins caspase 1, caspase in the cytoplasm, shifting its localization to be predominantly 8andgranzyme B. In this study, we have used Flag- and yellow nuclear by fusion of a heterologous nuclear localization signal fluorescent protein (YFP)-tagged versions of CrmA to investigate did not impair its ability to prevent Fas-induced apoptosis. We the mechanisms that regulate its subcellular localization. We show propose that nucleocytoplasmic shuttling would allow CrmA to that CrmA can actively enter and exit the nucleus and we dem- efficiently target cellular pro-apoptotic proteins not only in the onstrate the role of the nuclear export receptor CRM1 in this cytoplasm, but also in the nucleus, and thus to carry out its anti- shuttling process. CrmA contains a novel leucine-rich nuclear apoptotic function in both compartments. export signal (NES) that is functionally conserved in the anti- apoptotic cellular serpin PI-9. Besides this leucine-rich export signal, additional sequences mapping to a 103-amino-acid region Keywords: apoptosis, nuclear transport, CRM1.
    [Show full text]
  • Active Maintenance of Nuclear Actin by Importin 9 Supports Transcription
    Active maintenance of nuclear actin by PNAS PLUS importin 9 supports transcription Joseph Dopiea,1, Kari-Pekka Skarpa,1, Eeva Kaisa Rajakyläa, Kimmo Tanhuanpääb, and Maria K. Vartiainena,2 aProgram in Cell and Molecular Biology and bLight Microscopy Unit, Institute of Biotechnology, University of Helsinki, 00014 Helsinki, Finland Edited by Larry Gerace, The Scripps Research Institute, La Jolla, CA, and accepted by the Editorial Board January 4, 2012 (received for review November 17, 2011) Besides its essential and well established role as a component of that these biochemical properties of actin are utilized also within the cytoskeleton, actin is also present in the cell nucleus, where the nucleus. Indeed, actin and nuclear myosins have been impli- it has been linked to many processes that control gene expression. cated in the movement of individual gene loci upon transcription For example, nuclear actin regulates the activity of specific tran- activation (14–16) and even in rearranging whole chromosomes scription factors, associates with all three RNA polymerases, and is within the nucleus (17). Furthermore, although the functional con- a component of many chromatin remodelling complexes. Despite formation of nuclear actin is still under debate (18, 19), many of the the fact that two export receptors, Crm1 and exportin 6, have been nuclear actin related functions mentioned above are disrupted linked to nuclear export of actin, the mechanism by which actin upon treatment of cells with drugs affecting actin polymerization enters the nucleus to elicit these essential functions has not been (15, 20, 21), suggesting that actin polymerization plays a role also determined. It is also unclear whether actin is actively exchanged in the cell nucleus.
    [Show full text]
  • Cytoplasmic Role in Actin Polymerization Is Uncoupled From
    Nuclear Role of WASp in Gene Transcription Is Uncoupled from Its ARP2/3-Dependent Cytoplasmic Role in Actin Polymerization This information is current as Sanjoy Sadhukhan, Koustav Sarkar, Matthew Taylor, Fabio of September 25, 2021. Candotti and Yatin M. Vyas J Immunol 2014; 193:150-160; Prepublished online 28 May 2014; doi: 10.4049/jimmunol.1302923 http://www.jimmunol.org/content/193/1/150 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2014/05/27/jimmunol.130292 Material 3.DCSupplemental http://www.jimmunol.org/ References This article cites 51 articles, 24 of which you can access for free at: http://www.jimmunol.org/content/193/1/150.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 25, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Nuclear Role of WASp in Gene Transcription Is Uncoupled from Its ARP2/3-Dependent Cytoplasmic Role in Actin Polymerization Sanjoy Sadhukhan,*,1 Koustav Sarkar,*,†,1 Matthew Taylor,* Fabio Candotti,‡ and Yatin M.
    [Show full text]
  • The Role of Protein Disorder in Nuclear Transport and in Its Subversion by Viruses
    cells Review The Role of Protein Disorder in Nuclear Transport and in Its Subversion by Viruses Jacinta M. Wubben 1,2, Sarah C. Atkinson 1,2 and Natalie A. Borg 1,2,* 1 Chronic Infectious and Inflammatory Diseases Research, School of Health and Biomedical Sciences, RMIT University, Bundoora, VIC 3083, Australia; [email protected] (J.M.W.); [email protected] (S.C.A.) 2 Infection and Immunity Program, Monash Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Clayton, VIC 3800, Australia * Correspondence: [email protected] Received: 12 October 2020; Accepted: 8 December 2020; Published: 10 December 2020 Abstract: The transport of host proteins into and out of the nucleus is key to host function. However, nuclear transport is restricted by nuclear pores that perforate the nuclear envelope. Protein intrinsic disorder is an inherent feature of this selective transport barrier and is also a feature of the nuclear transport receptors that facilitate the active nuclear transport of cargo, and the nuclear transport signals on the cargo itself. Furthermore, intrinsic disorder is an inherent feature of viral proteins and viral strategies to disrupt host nucleocytoplasmic transport to benefit their replication. In this review, we highlight the role that intrinsic disorder plays in the nuclear transport of host and viral proteins. We also describe viral subversion mechanisms of the host nuclear transport machinery in which intrinsic disorder is a feature. Finally, we discuss nuclear import and export as therapeutic targets for viral infectious disease. Keywords: protein intrinsic disorder; nuclear transport receptors; nuclear export sequence; nuclear import sequence; nucleoporins; viral infection; nuclear import inhibitors; nuclear export inhibitors 1.
    [Show full text]
  • A Nuclear Export Signal Is Essential for the Cytosolic Localization of the Ran Binding Protein, Ranbp1 Stephanie A
    A Nuclear Export Signal Is Essential for the Cytosolic Localization of the Ran Binding Protein, RanBP1 Stephanie A. Richards, Karen M. Lounsbury, Kimberly L. Carey, and Ian G. Macara Departments of Pathology and Microbiology/Molecular Genetics, University of Vermont, Burlington, Vermont 05405-0068 Abstract. RanBP1 is a Ran/TC4 binding protein that contains a nuclear export signal that is necessary but can promote the interaction between Ran and 13-impor- not sufficient for the nuclear export of a functional tin/13-karyopherin, a component of the docking com- RBD. In transiently transfected cells, epitope-tagged plex for nuclear protein cargo. This interaction occurs RanBP1 promotes dexamethasone-dependent nuclear through a Ran binding domain (RBD). Here we show accumulation of a glucocorticoid receptor-green fluo- that RanBP1 is primarily cytoplasmic, but the isolated rescent protein fusion, but the isolated RBD potently RBD accumulates in the nucleus. A region COOH-ter- inhibits this accumulation. The cytosolic location of minal to the RBD is responsible for this cytoplasmic lo- RanBP1 may therefore be important for nuclear pro- calization. This domain acts heterologously, localizing a tein import. RanBP1 may provide a key link between nuclear cyclin B1 mutant to the cytoplasm. The domain the nuclear import and export pathways. RAFFIC between the nucleus and the cytoplasm oc- Rev and hnRNP A1 are involved in the export of RNA curs through nuclear pore complexes in the nuclear from the nucleus (Pifiol-Roma and Dreyfuss, 1992; Fischer T membrane. Proteins containing a nuclear localiza- et al., 1994; for review see Izaurralde and Mattaj, 1995); tion signal (NLS) 1 are actively transported into the nu- PKI is a regulatory subunit of cAMP-dependent protein cleus by the nuclear import machinery.
    [Show full text]
  • NES Consensus Redefined by Structures of PKI-Type and Rev-Type Nuclear Export Signals Bound to CRM1
    ARTICLES NES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1 Thomas Güttler1,5, Tobias Madl2,3,5, Piotr Neumann4,5, Danilo Deichsel1, Lorenzo Corsini2,3, Thomas Monecke4, Ralf Ficner4, Michael Sattler2,3 & Dirk Görlich1 Classic nuclear export signals (NESs) confer CRM1-dependent nuclear export. Here we present crystal structures of the RanGTP−CRM1 complex alone and bound to the prototypic PKI or HIV-1 Rev NESs. These NESs differ markedly in the spacing of their key hydrophobic (F) residues, yet CRM1 recognizes them with the same rigid set of five F pockets. The different F spacings are compensated for by different conformations of the bound NESs: in the case of PKI, an a-helical conformation, and in the case of Rev, an extended conformation with a critical proline docking into a F pocket. NMR analyses of CRM1-bound and CRM1-free PKI NES suggest that CRM1 selects NES conformers that pre-exist in solution. Our data lead to a new structure-based NES consensus, and explain why NESs differ in their affinities for CRM1 and why supraphysiological NESs bind the exportin so tightly. Nuclear export is essential for eukaryotic life. It proceeds through HIV-1, for example, uses CRM1 to export its genomic RNA from nuclear pore complexes (NPCs) and is typically accomplished by nuclei4,19,20. The HIV-1 Rev protein is an adaptor in this process. It exportins1,2. The most versatile exportin is CRM1 (also called binds the unspliced viral RNA, recruits CRM1 and thereby triggers exportin 1 or Xpo1p)3–7.
    [Show full text]
  • Snapshot: Nuclear Transport Elizabeth J
    SnapShot: Nuclear Transport Elizabeth J. Tran, Timothy A. Bolger, and Susan R. Wente Cell and Developmental Biology, Vanderbilt University Medical Center, Nashville, TN 37232, USA S. cerevisiae Metazoan Transport Karyopherins Karyopherins Complex & Other & Other Category Receptors Cargo(s) Essential Receptors Cargo(s) I Kap95 Kap60 adaptor Yes Importin-b1 Importin-a adaptor for cNLS proteins for cNLS proteins, Snurportin adaptor for U snRNPs II Kap95 — Yes Importin-b1 SREBP-2, HIV Rev and TAT, Cyclin B Kap104 Nab2, Hrp1 t.s. Transportin or PY-NLS-containing (mRNA-binding Transportin 2 proteins, mRNA- proteins) binding proteins, histones, ribosomal proteins Kap123 SRP proteins, No Importin 4 histones, ribosomal histones, ribo- protein S3a, somal proteins Transition Protein 2 Kap111/Mtr10 Npl3 (mRNA- t.s. Transportin SR1 SR proteins, HuR binding protein), or SR2 tRNAs Kap121/Pse1 ribosomal Yes Importin 5/ histones, ribosomal proteins, Yra1, Importin-b3/ proteins Import Spo12, Ste12, RanBP5 Yap1, Pho4, histones Kap119/Nmd5 ribosomal pro- No Importin 7 GR, ribosomal pro- teins, histones, teins, Smad, ERK Hog1, Crz1, Dst1 Kap108/Sxm1 Lhp1, ribosomal No Importin 8 SRP19, Smad proteins Kap114 TBP, histones, No Importin 9 histones, ribosomal Nap1, Sua7 proteins Kap122/Pdr6 Toa1 and Toa2, No — — TFIIA Kap120 Rpf1 No — — — — — Importin 11 UbcM2, rpL12 Ntf2 Ran/Gsp1 (GDP- Yes NTF2 Ran (GDP-bound bound form) form) III Kap142/Msn5 Replication pro- No — — tein A (import), Pho4, Crz1, Export Cdh1 (export) — — — Importin 13 UBC9, Y14 (import), Import/
    [Show full text]