Modulation of Wnt Signaling by the Nuclear Localization of Cellular FLIP-L
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
LEPTOMYCIN A+B Inhibitors of Nuclear-Cytoplasmic Transport Highlighthighlight Tomorrow’S Reagents Manufactured Today™ International Version
PRODUCT FLYER LEPTOMYCIN A+B Inhibitors of Nuclear-Cytoplasmic Transport highlighthighlight Tomorrow’s Reagents Manufactured Today™ International Version Available Nuclear Transport at Best Prices! In eukaryotic cells, the enclosure of ge- 65nm long aqueous channel. Transport oc- netic information by the nucleus allows the curs by a variety of different pathways, de- spatial and temporal separation of DNA rep- fined by individual receptors and accessory Leptomycin A+B lication and transcription in the nucleus from soluble factors. Soluble factors selectively cytoplasmic protein synthesis. This compart- target substrates/cargo for import and ex- mentalization permits a high level of regula- port as well as deliver them to their appropri- Leptomycin A [LMA] tion of these processes, but at the same time ate intracellular destination. Macromolecules ALX-380-101-C050 50 µg necessitates a system of selective macromo- (cargo) transported through these channels ALX-380-101-C100 100 µg lecular transport between the nucleus and include proteins and RNA, as individual enti- An antifungal antibiotic that acts as an inhibitor cytoplasm [1, 2]. ties or as part of larger complexes such as the of nuclear export by interacting with CRM1/ex- The term nuclear-cytoplasmic transport ribosomal subunits. While small molecules portin-1. Inhibits nucleo-cytoplasmic transloca- such as ions and proteins of up to 60kDa tion of molecules such as the HIV-1 Rev protein refers to the movement of a large variety of and Rev-dependent export of mRNA. macromolecules both into and out of the can diffuse through the NPC, small proteins nucleus. actively cross the NPC in a carrier-mediated SOURCE: Isolated from Streptomyces sp. -
FAK Nuclear Export Signal Sequences
FEBS Letters 582 (2008) 2402–2406 FAK nuclear export signal sequences Valeria Ossovskayaa,1, Ssang-Taek Limb, Nobuyuki Otac, David D. Schlaepferb, Dusko Ilicc,d,* a Department of Anatomy, University of California San Francisco, San Francisco, CA, USA b Department of Reproductive Medicine, University of California, San Diego, CA, USA c A-cube Inc., Burlingame, CA, USA d Department of Cell and Tissue Biology, University of California San Francisco, San Francisco, CA, USA Received 13 April 2008; revised 28 May 2008; accepted 1 June 2008 Available online 10 June 2008 Edited by Varda Rotter accumulation. R177/R178A mutations also prevented FERM Abstract Ubiquitously expressed focal adhesion kinase (FAK), a critical component in transducing signals from sites of cell con- nuclear localization [12]. tacts with extracellular matrix, was named after its typical local- Since it is found in both cytoplasm and nucleus, FAK obvi- ization in focal adhesions. A nuclear localization of FAK has ously has to have a mechanism that enables nucleocytoplasmic been also reported and its scaffolding role in nucleus and require- shuttling. Leucine-rich nuclear export signal (NES) sequences ment for p53 ubiquitination were only recently described. often mediate protein export from the nucleus to the cyto- Whereas FAK nuclear localization signal (NLS) was found in plasm [13–16]. The first NES were identified in human immu- F2 lobe of FERM domain, nuclear export signal (NES) nodeficiency virus, type I-coded Rev protein [17] and protein sequences have not been yet determined. Here we demonstrate kinase A inhibitor of cAMP-dependent protein kinase [18]. that FAK has two NES sequences, NES1 in F1 lobe of FERM NES sequences consist of 4–5 hydrophobic residues within a domain and NES2 in kinase domain. -
The Effects of Leptomycin B on Hpv-Infected Cells
THE EFFECTS OF LEPTOMYCIN B ON HPV-INFECTED CELLS Carol Elizabeth Jolly A Thesis Submitted for the Degree of PhD at the University of St Andrews 2008 Full metadata for this item is available in St Andrews Research Repository at: http://research-repository.st-andrews.ac.uk/ Please use this identifier to cite or link to this item: http://hdl.handle.net/10023/900 This item is protected by original copyright This item is licensed under a Creative Commons Licence The Effects of Leptomycin B on HPV-Infected Cells By Carol Elizabeth Jolly A thesis submitted to the University of St Andrews in partial fulfilment of the requirement of the degree of Doctor of Philosophy Bute Medical School October 2008 Contents Declaration ii Copyright declaration iii Acknowledgements iv – v Abbreviations vi - viii Abstract ix Table of Contents x - xiii List of Figures xiv - xvi List of Tables xvi i Declaration I, Carol Elizabeth Jolly, hereby certify that this thesis, which is approximately 58,000 words in length, has been written by me, that it is the record of work carried out by me and that it has not been submitted in any previous application for a higher degree. I was admitted as a research student in September, 2004 and as a candidate for the degree of Doctor of Philosophy Medicine in October, 2005; the higher study for which this is a record was carried out in the University of St Andrews between 2004 and 2008. Date I hereby certify that the candidate has fulfilled the conditions of the Resolution and Regulations appropriate for the degree of Doctor of Philosophy Medicine in the University of St Andrews and that the candidate is qualified to submit this thesis in application for that degree. -
Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins
International Journal of Molecular Sciences Article Bioinformatic Analysis of Structure and Function of LIM Domains of Human Zyxin Family Proteins M. Quadir Siddiqui 1,† , Maulik D. Badmalia 1,† and Trushar R. Patel 1,2,3,* 1 Alberta RNA Research and Training Institute, Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Drive, Lethbridge, AB T1K 3M4, Canada; [email protected] (M.Q.S.); [email protected] (M.D.B.) 2 Department of Microbiology, Immunology and Infectious Disease, Cumming School of Medicine, University of Calgary, 3330 Hospital Drive, Calgary, AB T2N 4N1, Canada 3 Li Ka Shing Institute of Virology, University of Alberta, Edmonton, AB T6G 2E1, Canada * Correspondence: [email protected] † These authors contributed equally to the work. Abstract: Members of the human Zyxin family are LIM domain-containing proteins that perform critical cellular functions and are indispensable for cellular integrity. Despite their importance, not much is known about their structure, functions, interactions and dynamics. To provide insights into these, we used a set of in-silico tools and databases and analyzed their amino acid sequence, phylogeny, post-translational modifications, structure-dynamics, molecular interactions, and func- tions. Our analysis revealed that zyxin members are ohnologs. Presence of a conserved nuclear export signal composed of LxxLxL/LxxxLxL consensus sequence, as well as a possible nuclear localization signal, suggesting that Zyxin family members may have nuclear and cytoplasmic roles. The molecular modeling and structural analysis indicated that Zyxin family LIM domains share Citation: Siddiqui, M.Q.; Badmalia, similarities with transcriptional regulators and have positively charged electrostatic patches, which M.D.; Patel, T.R. -
KPT-350 (And Other XPO1 Inhibitors)
Cognitive Vitality Reports® are reports written by neuroscientists at the Alzheimer’s Drug Discovery Foundation (ADDF). These scientific reports include analysis of drugs, drugs-in- development, drug targets, supplements, nutraceuticals, food/drink, non-pharmacologic interventions, and risk factors. Neuroscientists evaluate the potential benefit (or harm) for brain health, as well as for age-related health concerns that can affect brain health (e.g., cardiovascular diseases, cancers, diabetes/metabolic syndrome). In addition, these reports include evaluation of safety data, from clinical trials if available, and from preclinical models. KPT-350 (and other XPO1 inhibitors) Evidence Summary CNS penetrant XPO1 inhibitor with pleiotropic effects. May protect against neuroinflammation and proteotoxic stress, but similar drugs show a poor benefit to side effect profile in cancer. Neuroprotective Benefit: KPT-350 may reduce neuroinflammation and partially alleviate nucleocytoplasmic transport defects, but effects are pleiotropic and dependent on cellular and environmental conditions. Aging and related health concerns: XPO1 inhibition may promote autophagy, but has pleiotropic effects and is only marginally beneficial in cancer. Safety: KPT-350 has not been clinically tested. Tested XPO1 inhibitors are associated with myelosuppression, gastrointestinal events, anorexia, low blood sodium, and neurological events. Poor benefit to side effect ratio in cancer. 1 Availability: In clinical trials and Dose: Oral administration KPT-350 research use Dose not established for KPT-350 Chemical formula: Half-life: Unknown for KPT-350 BBB: KPT-350 is penetrant C18H17F6N5O2 6-7 hours for selinexor MW: 449.3 g/mol SINEs terminal half-life ~24 hours Clinical trials: None completed for Observational studies: Evidence for KPT-350. Phase 1 in ALS is ongoing. -
Nucleocytoplasmic Transport in Apoptosis
Nucleocytoplasmic transport in apoptosis E Ferrando-May*,1 Introduction 1 Molecular Toxicology Group, Faculty of Biology, University of Konstanz, PO The separation of the nucleus and the cytoplasm is the Box X911, 78457 Konstanz, Germany defining feature of eukaryotic cells and is achieved by the * Corresponding author: E Ferrando-May; Tel: þ 49 7531 884054; nuclear envelope, a double-membrane system of highly Fax: þ 49 7531 884033; E-mail: [email protected] selective permeability. Interchange of material between these two compartments occurs through dedicated transport chan- nels perforating the nuclear envelope, the nuclear pore complexes (NPCs). These are elaborate supramolecular structures consisting of about 30 different proteins, most of Abstract which are termed nucleoporins (Nups). The composition and structure of the NPC have been analysed in detail by a The apoptotic demolition of the nucleus is accomplished by combination of proteomics and electron microscopy ap- diverse proapoptotic factors, most of which are activated in proaches both in yeast and vertebrates, leading to a refined the cytoplasm and gain access to the nucleoplasm during the view of its molecular architecture. Essentially, the NPC is cell death process. The nucleus is also the main target for composed of three substructures of eight-fold rotational genotoxic insult, a potent apoptotic trigger. Signals generated symmetry: the cytoplasmic fibrils, the central framework, in the nucleus by DNA damage have to propagate to all and the nuclear basket (Figure 1). In the central framework, cellular compartments to ensure the coordinated execution of Nups form distinct subcomplexes which are arranged cell demise. The nucleocytoplasmic shuttling of signalling symmetrically with respect to the plane of the nuclear and execution factors is thus an integral part of the apoptotic envelope and enclose the central pore channel. -
Multiple Roles of Phosphoinositide-Specific Phospholipase C Isozymes
BMB reports Mini Review Multiple roles of phosphoinositide-specific phospholipase C isozymes Pann-Ghill Suh1,*, Jae-Il Park1, Lucia Manzoli2, Lucio Cocco2, Joanna C. Peak3, Matilda Katan3, Kiyoko Fukami4, Tohru Kataoka5, Sanguk Yun1 & Sung Ho Ryu1 1Division of Molecular and Life Sciences, Pohang University of Science and Technology, Pohang, Korea, 2Cellular Signaling Laboratory, Department of Anatomical Sciences, University of Bologna, Via Irnerio, 48 I-40126, Bologna, Italy, 3Cancer Research UK Centre for Cell and Molecular Biology, Chester Beatty Laboratories, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK, 4Laboratory of Genome and Biosignal, Tokyo University of Pharmacy and Life Science, 1432-1 Horinouchi, Hachioji, 192-0392 Tokyo, Japan, 5Division of Molecular Biology, Department of Biochemistry and Molecular Biology, Kobe University Graduate School of Medicine, Chuo-ku, Kobe, Japan Phosphoinositide-specific phospholipase C is an effector mole- cellular calcium release (1-3; Fig. 1a). cule in the signal transduction process. It generates two sec- The first evidence of PLC activity was suggested by Hokin et ond messengers, inositol-1,4,5-trisphosphate and diacylglycer- al. in 1953 who reported specific hydrolysis of phospholipids ol from phosphatidylinositol 4,5-bisphosphate. Currently, thir- in pigeon’s pancreas slices after cholinergic stimulation (4). teen mammal PLC isozymes have been identified, and they are The authors showed that the enhanced turnover of phosphor- divided into six groups: PLC-β, -γ, -δ, -ε, -ζ and -η. Sequence ylinositol groups of phosphatidylinositol occurred in cells as a analysis studies demonstrated that each isozyme has more response to a variety of stimuli. In 1983, Streb et al. -
Exploring Machine Learning Methods for Nuclear Export Sequence Identification
Exploring Machine Learning Methods for Nuclear Export Sequence Identification A Major Qualifying Project Report Submitted to the Faculty Of the WORCESTER POLYTECHNIC INSTITUTE In partial fulfillment of the requirements for the Degree of Bachelor of Science ______________________________ Erin Conneilly Advisors: ______________________________ Professor Destin Heilman (CBC) ______________________________ Professor Rodica Neamtu (CS) Abstract The goal of this project is to design and implement a user-friendly machine learning tool that can be applied to the classification of polypeptides to find functional nuclear export sequences (NESs). This tool incorporates an API that takes advantage of support vector machines and can be expanded to include other models. Because NESs have been found to have consistent structure, structural data is incorporated into the model to increase confidence. This report is accompanied by a manual that instructs users on how to use the tool. 1 Table of Contents Abstract 1 Table of Contents 2 Table of Figures 3 Table of Tables 3 Acknowledgements 4 Introduction 5 Project Motivation 5 Problem Statement 5 Background 6 Section 1: Intracellular Transport 6 Section 2: Nuclear Export Sequence Structure 8 Section 3: Existing Prediction Methods 9 Section 4: Machine Learning Techniques 9 4.1 Recurrent Neural Networks (RNNs) 10 4.2 Nuclear Export Sequences as Time Series 10 4.3 Autoregressive Integrated Moving Average Model (ARIMA) 11 4.4 One-Class Support Vector Machines (OC SVM) 11 4.5 Scikit-Learn 13 Tool Overview and -
Subcellular Localization of Crma: Identification of a Novel Leucine-Rich
Biochem. J. (2003) 373, 251–259 (Printed in Great Britain) 251 Subcellular localization of CrmA: identification of a novel leucine-rich nuclear export signal conserved in anti-apoptotic serpins Jose A. RODRIGUEZ1,Simone W. SPAN, Frank A. E. KRUYT and Giuseppe GIACCONE Department of Medical Oncology, VU University Medical Center, HV1081 Amsterdam, The Netherlands The cowpox virus-encoded anti-apoptotic protein cytokine flanking the NES contribute to the CRM1-dependent nuclear response modifier A (CrmA) is a member of the serpin family export of CrmA. Although YFP-tagged CrmA is primarily located that specifically inhibits the cellular proteins caspase 1, caspase in the cytoplasm, shifting its localization to be predominantly 8andgranzyme B. In this study, we have used Flag- and yellow nuclear by fusion of a heterologous nuclear localization signal fluorescent protein (YFP)-tagged versions of CrmA to investigate did not impair its ability to prevent Fas-induced apoptosis. We the mechanisms that regulate its subcellular localization. We show propose that nucleocytoplasmic shuttling would allow CrmA to that CrmA can actively enter and exit the nucleus and we dem- efficiently target cellular pro-apoptotic proteins not only in the onstrate the role of the nuclear export receptor CRM1 in this cytoplasm, but also in the nucleus, and thus to carry out its anti- shuttling process. CrmA contains a novel leucine-rich nuclear apoptotic function in both compartments. export signal (NES) that is functionally conserved in the anti- apoptotic cellular serpin PI-9. Besides this leucine-rich export signal, additional sequences mapping to a 103-amino-acid region Keywords: apoptosis, nuclear transport, CRM1. -
TDP43 Nuclear Export and Neurodegeneration in Models of Amyotrophic Lateral Sclerosis and Frontotemporal Dementia
www.nature.com/scientificreports OPEN TDP43 nuclear export and neurodegeneration in models of amyotrophic lateral sclerosis and Received: 18 July 2017 Accepted: 2 March 2018 frontotemporal dementia Published: xx xx xxxx Hilary C. Archbold1, Kasey L. Jackson2, Ayush Arora1, Kaitlin Weskamp1,3, Elizabeth M.-H. Tank1, Xingli Li1, Roberto Miguez1, Robert D. Dayton2, Sharon Tamir4, Ronald L. Klein2 & Sami J. Barmada1,3,5 Amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) are progressive neurodegenerative disorders marked in most cases by the nuclear exclusion and cytoplasmic deposition of the RNA binding protein TDP43. We previously demonstrated that ALS–associated mutant TDP43 accumulates within the cytoplasm, and that TDP43 mislocalization predicts neurodegeneration. Here, we sought to prevent neurodegeneration in ALS/FTD models using selective inhibitor of nuclear export (SINE) compounds that target exportin-1 (XPO1). SINE compounds modestly extend cellular survival in neuronal ALS/FTD models and mitigate motor symptoms in an in vivo rat ALS model. At high doses, SINE compounds block nuclear egress of an XPO1 cargo reporter, but not at lower concentrations that were associated with neuroprotection. Neither SINE compounds nor leptomycin B, a separate XPO1 inhibitor, enhanced nuclear TDP43 levels, while depletion of XPO1 or other exportins had little efect on TDP43 localization, suggesting that no single exporter is necessary for TDP43 export. Supporting this hypothesis, we fnd overexpression of XPO1, XPO7 and NXF1 are each sufcient to promote nuclear TDP43 egress. Taken together, our results indicate that redundant pathways regulate TDP43 nuclear export, and that therapeutic prevention of cytoplasmic TDP43 accumulation in ALS/FTD may be enhanced by targeting several overlapping mechanisms. -
The Erbb/HER Family of Protein-Tyrosine Kinases and Cancer
Pharmacological Research 79 (2014) 34–74 Contents lists available at ScienceDirect Pharmacological Research jo urnal homepage: www.elsevier.com/locate/yphrs Invited Review The ErbB/HER family of protein-tyrosine kinases and cancer ∗ Robert Roskoski Jr. Blue Ridge Institute for Medical Research, 3754 Brevard Road, Suite 116, Box 19, Horse Shoe, NC 28742, USA a r t i c l e i n f o a b s t r a c t Article history: The human epidermal growth factor receptor (EGFR) family consists of four members that belong to the Received 7 November 2013 ErbB lineage of proteins (ErbB1–4). These receptors consist of a glycosylated extracellular domain, a sin- Accepted 8 November 2013 gle hydrophobic transmembrane segment, and an intracellular portion with a juxtamembrane segment, a protein kinase domain, and a carboxyterminal tail. Seven ligands bind to EGFR including epidermal This paper is dedicated to the memory of growth factor and transforming growth factor ␣, none bind to ErbB2, two bind to ErbB3, and seven lig- Dr. John W. Haycock (1949–2012) who ands bind to ErbB4. The ErbB proteins function as homo and heterodimers. The heterodimer consisting of prompted the author to write a review on the treatment of malignant diseases with ErbB2, which lacks a ligand, and ErbB3, which is kinase impaired, is surprisingly the most robust signaling targeted protein kinase inhibitors. complex of the ErbB family. Growth factor binding to EGFR induces a large conformational change in the extracellular domain, which leads to the exposure of a dimerization arm in domain II of the extracellular Chemical compounds studied in this article: segment. -
Active Maintenance of Nuclear Actin by Importin 9 Supports Transcription
Active maintenance of nuclear actin by PNAS PLUS importin 9 supports transcription Joseph Dopiea,1, Kari-Pekka Skarpa,1, Eeva Kaisa Rajakyläa, Kimmo Tanhuanpääb, and Maria K. Vartiainena,2 aProgram in Cell and Molecular Biology and bLight Microscopy Unit, Institute of Biotechnology, University of Helsinki, 00014 Helsinki, Finland Edited by Larry Gerace, The Scripps Research Institute, La Jolla, CA, and accepted by the Editorial Board January 4, 2012 (received for review November 17, 2011) Besides its essential and well established role as a component of that these biochemical properties of actin are utilized also within the cytoskeleton, actin is also present in the cell nucleus, where the nucleus. Indeed, actin and nuclear myosins have been impli- it has been linked to many processes that control gene expression. cated in the movement of individual gene loci upon transcription For example, nuclear actin regulates the activity of specific tran- activation (14–16) and even in rearranging whole chromosomes scription factors, associates with all three RNA polymerases, and is within the nucleus (17). Furthermore, although the functional con- a component of many chromatin remodelling complexes. Despite formation of nuclear actin is still under debate (18, 19), many of the the fact that two export receptors, Crm1 and exportin 6, have been nuclear actin related functions mentioned above are disrupted linked to nuclear export of actin, the mechanism by which actin upon treatment of cells with drugs affecting actin polymerization enters the nucleus to elicit these essential functions has not been (15, 20, 21), suggesting that actin polymerization plays a role also determined. It is also unclear whether actin is actively exchanged in the cell nucleus.