Competitive Strategies of Soft Corals (Coelenterata: Octocorallia): 111
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The Scope of Published Population Genetic Data for Indo-Pacific Marine Fauna and Future Research Opportunities in the Region
Bull Mar Sci. 90(1):47–78. 2014 research paper http://dx.doi.org/10.5343/bms.2012.1107 The scope of published population genetic data for Indo-Pacific marine fauna and future research opportunities in the region 1 School of Biological Sciences, Jude Keyse 1 * University of Queensland, St 2 Lucia, QLD 4072, Australia. Eric D Crandall Robert J Toonen 3 2 NOAA Southwest Fisheries 4 Science Center, Fisheries Christopher P Meyer Ecology Division & Institute of Eric A Treml 5 Marine Sciences, UC Santa Cruz, 1 110 Shaffer Rd., Santa Cruz, Cynthia Riginos California 95062. 3 Hawai‘i Institute of Marine ABSTRACT.—Marine biodiversity reaches its pinnacle Biology, School of Ocean and Earth Science and Technology, in the tropical Indo-Pacific region, with high levels of both University of Hawai‘i at Mānoa, species richness and endemism, especially in coral reef P.O. Box 1346, Kaneohe, Hawaii habitats. While this pattern of biodiversity has been known 96744. to biogeographers for centuries, causal mechanisms remain 4 Smithsonian enigmatic. Over the past 20 yrs, genetic markers have been Institution, National Museum employed by many researchers as a tool to elucidate patterns of Natural History, 10th of biodiversity above and below the species level, as well & Constitution Ave., as to make inferences about the underlying processes of NW, Washington, DC 20560- diversification, demographic history, and dispersal. In a 0163. quantitative, comparative framework, these data can be 5 Department of Zoology, synthesized to address questions about this bewildering University of Melbourne, diversity by treating species as “replicates.” However, Parkville, VIC 3010, Australia. the sheer size of the Indo-Pacific region means that the * Corresponding author email: geographic and genetic scope of many species’ data sets are <[email protected]>. -
Alcyonacea: a Potential Source for Production of Nitrogen-Containing Metabolites
Review Alcyonacea: A Potential Source for Production of Nitrogen-Containing Metabolites Walied Mohamed Alarif 1,*, Ahmed Abdel-Lateff 2,3,*, Hajer Saeed Alorfi 4 and Najla Ali Alburae 5,6 1 Department of Marine Chemistry, Faculty of Marine Sciences, King Abdulaziz University, PO. Box 80207, Jeddah 21589, Saudi Arabia 2 Department of Natural Products and Alternative Medicine, Faculty of Pharmacy, King Abdulaziz University, PO Box 80260, Jeddah 21589, Saudi Arabia 3 Department of Pharmacognosy, Faculty of Pharmacy, Minia University, Minia 61519, Egypt 4 Department of Chemistry, Faculty of Science, King Abdulaziz University, PO. Box 80203, Jeddah 21589, Saudi Arabia; [email protected] 5 Department of Biology, Faculty of Science, King Abdulaziz University, PO. Box 80203, Jeddah 21589, Saudi Arabia; [email protected] 6 Biology Department, College of Science, Princess Nourah bint Abdulrahman University, PO. Box 84428, Riyadh 11671, Saudi Arabia * Correspondence: [email protected] (W.M.A); [email protected] (A.A.‐L.); Tel.: +966‐56‐0352‐ 034(W.M.A); +966‐54‐6477‐175 (A.A.‐L.) Received: 17 December 2018; Accepted: 9 January 2019; Published: 14 January 2019 Abstract: Alcyonacea (soft corals and gorgonia) are well known for their production of a wide array of unprecedented architecture of bioactive metabolites. This diversity of compounds reported from Alcyonacea confirms its productivity as a source of drug leads and, consequently, indicates requirement of further chemo‐biological investigation. This review can be considered a roadmap to investigate the Alcyonacea, particularly those produce nitrogen‐containing metabolites. It covers the era from the beginning of marine nitrogen‐containing terpenoids isolation from Alcyonacea up to December 2018. -
Special Invertebrate Models and Integrative Medical Applications: Regulations, Mechanisms, and Therapies
Evidence-Based Complementary and Alternative Medicine Special Invertebrate Models and Integrative Medical Applications: Regulations, Mechanisms, and Therapies Guest Editors: Chih-Yang Huang, Edwin L. Cooper, Catherine Fang-Yeu Poh, Wei-Wen Kuo, Tung-Sheng Chen, and Ronald Sherman Special Invertebrate Models and Integrative Medical Applications: Regulations, Mechanisms, and Therapies Evidence-Based Complementary and Alternative Medicine Special Invertebrate Models and Integrative Medical Applications: Regulations, Mechanisms, and Therapies Guest Editors: Chih-Yang Huang, Edwin L. Cooper, Catherine Fang-Yeu Poh, Wei-Wen Kuo, Tung-Sheng Chen, and Ronald Sherman Copyright © 2014 Hindawi Publishing Corporation. All rights reserved. This is a special issue published in “Evidence-Based Complementary and Alternative Medicine.” All articles are open access articles distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Editorial Board Mahmood A. Abdulla, Malaysia Jen-Hwey Chiu, Taiwan Ching-Liang Hsieh, Taiwan Jon Adams, Australia Jae Youl Cho, Korea Jing Hu, China Zuraini Ahmad, Malaysia W. Chi-shing Cho, Hong Kong Sheng-Teng Huang, Taiwan U. Paulino Albuquerque, Brazil Seung-Hun Cho, Republic of Korea BennyTanKwongHuat,Singapore Gianni Allais, Italy Chee Yan Choo, Malaysia Roman Huber, Germany Terje Alraek, Norway Li-Fang Chou, Taiwan Angelo Antonio Izzo, Italy Souliman Amrani, Morocco Ryowon Choue, Republic of Korea Suresh Jadhav, India Akshay Anand, India Shuang-En Chuang, Taiwan Kanokwan Jarukamjorn, Thailand Shrikant Anant, USA Joo-Ho Chung, Republic of Korea Yong Jiang , China Manuel Arroyo-Morales, Spain Edwin L. Cooper, USA Zheng L. Jiang, China S. M. B. Asdaq, Saudi Arabia Meng Cui, China Stefanie Joos, Germany Seddigheh Asgary, Iran R. -
Chemical Diversity and Biological Activity of Secondary Metabolites from Soft Coral Genus Sinularia Since 2013
Review Chemical Diversity and Biological Activity of Secondary marine drugs Metabolites from Soft Coral Genus Sinularia since 2013 Xia YanReview 1, Jing Liu 1, Xue Leng 1 and Han Ouyang 2,* Chemical Diversity and Biological Activity of Secondary Metabolites from1 Li Dak Soft Sum Yip Coral Yio Chin Kenneth Genus Li MarineSinularia Biopharmaceuticalsince Research 2013 Center, Department of Marine Pharmacy, College of Food and Pharmaceutical Sciences, Ningbo University, Xia Yan 1, Jing Liu 1, Xue LengNingbo1 and 315800 Han Ouyang, China; [email protected],* (X.Y.); [email protected] (J.L.); [email protected] (X.L.) 2 Institute of Drug Discovery Technology, Ningbo University, Ningbo 315211, China * Correspondence: [email protected]; Tel.: +86-574-87609771 1 Li Dak Sum Yip Yio Chin Kenneth Li Marine Biopharmaceutical Research Center, Department of Marine Pharmacy, College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315800, China; Abstract:[email protected] Sinularia is (X.Y.);one of [email protected] the conspicuous (J.L.); soft [email protected] coral species (X.L.) widely distributed in the world’s 2 oceansInstitute at a depth of Drug of Discovery about 12 Technology, m. Secondary Ningbo University,metabolites Ningbo from 315211, the Chinagenus Sinularia show great chem- * Correspondence: [email protected]; Tel.: +86-574-87609771 ical diversity. More than 700 secondary metabolites have been reported to date, including terpe- noids,Abstract: norterpenoids,Sinularia is steroids/steroidal one of the conspicuous glycosides, soft coral and species other widely types distributed. They showed in the world’sa broad range of potentoceans biological at a depth activities. -
Molecular Systematics of the Speciose Indo-Pacific Soft Coral Genus, Sinularia (Anthozoa: Octocorallia)
Invertebrate Biology 128(4): 303–323. r 2009, The Authors Journal compilation r 2009, The American Microscopical Society, Inc. DOI: 10.1111/j.1744-7410.2009.00179.x Molecular systematics of the speciose Indo-Pacific soft coral genus, Sinularia (Anthozoa: Octocorallia) Catherine S. McFadden,1,a Leen P. van Ofwegen,2 Elizabeth J. Beckman,1 Yehuda Benayahu,3 and Phil Alderslade4 1 Department of Biology, Harvey Mudd College, Claremont, California, USA 2 National Natural History Museum (Naturalis), Leiden, The Netherlands 3 Department of Zoology, University of Tel Aviv, Ramat Aviv, Tel Aviv, Israel 4 CSIRO, Marine & Atmospheric Research, Castray Esplanade, Hobart, Tasmania, Australia Abstract. The speciose tropical soft coral genus Sinularia traditionally has been divided into five intrageneric taxonomic groups based on variation in a single morphological character: the shape of the club sclerites (calcite skeletal elements) embedded in the surface tissues of the colony. To test the phylogenetic utility of this system of classification, we used a 735-bp fragment of the octocoral-specific mitochondrial msh1 gene to construct a molecular phy- logeny that included 80 of the B150 recognized morphospecies of Sinularia. The msh1 phy- logeny recovered five well-supported clades, but they were not congruent with the traditional intrageneric taxonomic groups. Mapping of characters onto the tree suggested that the five major clades plus several additional sub-clades of Sinularia can be distinguished based on a suite of four morphological characters; these include the presence of sclerites in the tentacle, collaret, and point regions of the polyps, in addition to the shape of the club sclerites in the surface tissues. -
Soft Corals (Octocorallia: Alcyonacea) from Southern Taiwan. II. Species
Zoological Studies 43(3): 548-560 (2004) Soft Corals (Octocorallia: Alcyonacea) from Southern Taiwan. II. Species Diversity and Distributional Patterns Yehuda Benayahu1,*, Ming-Shiou Jeng2, Shimrit Perkol-Finkel1 and Chang-Feng Dai3 1Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv, Tel Aviv 69978, Israel 2Institute of Zoology, Academia Sinica, Taipei, Taiwan 115, R.O.C. 3Institute of Oceanography, National Taiwan University, Taipei, P.O. Box 23-13, Taiwan 106, R.O.C. (Accepted June 28, 2004) Yehuda Benayahu, Ming-Shiou Jeng, Shimrit Perkol-Finkel and Chang-Feng Dai (2004) Soft corals (Octocorallia: Alcyonacea) from southern Taiwan. II. species diversity and distributional patterns. Zoological Studies 43(3): 548-560. The geographic setting of Taiwan, between the West Pacific Ocean and East China Sea and at the crossroads of the Philippine-Japan I. Arc, has produced reefs of special biogeographical inter- est. It has been suggested that Taiwan may have served as a“stepping-stone”for the dispersal of shallow reef organisms. Soft corals from Nanwan Bay and Green I. (Lutao in Chinese), southern Taiwan, were studied dur- ing 1994 and 1998. Scuba collections were carried out to a depth of 33 m. Approximately 230 samples were collected, encompassing a variety of species found on these reefs. Visual estimates were made of the under- water abundance of species. The collection yielded 69 species of the families Helioporidae, Clavulariidae, Tubiporidae, Alcyoniidae, Nephtheidae, Xeniidae, and Briareidae. These included 1 new species and 43 new zoogeographical records for Taiwan. Among the 22 listed genera, the survey recorded 7 for the 1st time in Taiwanese reefs. -
Herbivory in the Soft Coral Sinularia Flexibilis (Alcyoniidae) Chiara C
www.nature.com/scientificreports OPEN Herbivory in the soft coral Sinularia flexibilis (Alcyoniidae) Chiara C. Piccinetti1,*, Roberta Ricci1,*, Chiara Pennesi1, Giuseppe Radaelli2, Cecilia Totti1, Alessandra Norici1, Mario Giordano1,3,4 & Ike Olivotto1 Received: 17 December 2015 Our work provides strong support for the hypothesis that Sinularia flexibilis ingests diatoms such Accepted: 17 February 2016 as Thalassiosira pseudonana. We assessed algal ingestion by S. flexibilis through estimates of algal Published: 08 March 2016 removal, histological analyses, scanning electron microscopy observations, and gene expression determination (18S and silicon transporter 1) by real time PCR. Cell counts are strongly suggestive of algal removal by the coral; light and scanning microscopy provide qualitative evidence for the ingestion of T. pseudonana by S. flexibilis, while molecular markers did not prove to be sufficiently selective/ specific to give clear results. We thus propose that previous instances of inability of corals to ingest algae are reconsidered using different technical approach, before concluding that coral herbivory is not a general feature. Many corals are capable of both autotrophy, thanks to their photosynthetic symbionts, and heterotrophy1–4. The contribution of heterotrophy to coral nutrition can be substantial in several species and under conditions such as bleaching and low irradiance3,5,6. Coral heterotrophy can be supported by various substrates, including particulate organic matter5,7, bacteria8–10, zooplankton and phytoplankton, -
Classification and Regression Trees: a Powerful Yet Simple Technique for Ecological Data Analysis
Ecology, 81(11), 2000, pp. 3178±3192 q 2000 by the Ecological Society of America CLASSIFICATION AND REGRESSION TREES: A POWERFUL YET SIMPLE TECHNIQUE FOR ECOLOGICAL DATA ANALYSIS GLENN DE'ATH1 AND KATHARINA E. FABRICIUS2 1Tropical Environment Studies and Geography, James Cook University, Townsville, Qld 4811, Australia 2Australian Institute of Marine Science, P.M.B. 3, Townsville, Qld 4810, Australia Abstract. Classi®cation and regression trees are ideally suited for the analysis of com- plex ecological data. For such data, we require ¯exible and robust analytical methods, which can deal with nonlinear relationships, high-order interactions, and missing values. Despite such dif®culties, the methods should be simple to understand and give easily interpretable results. Trees explain variation of a single response variable by repeatedly splitting the data into more homogeneous groups, using combinations of explanatory var- iables that may be categorical and/or numeric. Each group is characterized by a typical value of the response variable, the number of observations in the group, and the values of the explanatory variables that de®ne it. The tree is represented graphically, and this aids exploration and understanding. Trees can be used for interactive exploration and for description and prediction of patterns and processes. Advantages of trees include: (1) the ¯exibility to handle a broad range of response types, including numeric, categorical, ratings, and survival data; (2) invariance to monotonic transformations of the explanatory variables; (3) ease and ro- bustness of construction; (4) ease of interpretation; and (5) the ability to handle missing values in both response and explanatory variables. Thus, trees complement or represent an alternative to many traditional statistical techniques, including multiple regression, analysis of variance, logistic regression, log-linear models, linear discriminant analysis, and survival models. -
Integrative Taxonomy of Sponges and Cnidarians at “El Pelado” Marine Protected Area (Santa Elena) Ecuador: Assessing the Potential of Metabolomics
INTEGRATIVE TAXONOMY OF SPONGES AND CNIDARIANS AT “EL PELADO” MARINE PROTECTED AREA (SANTA ELENA) ECUADOR: ASSESSING THE POTENTIAL OF METABOLOMICS By Karla Belén Jaramillo Aguilar A thesis presented for the degree of Doctor of Philosophy Department of Zoology School of Natural Sciences National University of Ireland, Galway December 2019 INTEGRATIVE TAXONOMY OF SPONGES AND CNIDARIANS AT “EL PELADO” MARINE PROTECTED AREA (SANTA ELENA) ECUADOR: ASSESSING THE POTENTIAL OF METABOLOMICS Thesis submitted for the degree of PhD at the National University of Ireland, Galway by PhD candidate: Karla Belén Jaramillo Aguilar Supervisor: Prof. Grace P. McCormack Co-supervisor: Prof. Olivier P. Thomas A thesis submitted to the Zoology Department, Faculty of Science, National University of Ireland, Galway in fulfilment of the requirements of the Degree of Doctor of Philosophy School of Natural Sciences Department of Zoology December 2019 No words can explain the beauty and simplicity of the ocean waves……… they have a peaceful music for those who listen. DECLARATION I declare that this thesis has not been submitted, in whole or in part, to this, or any other University for any degree. Except where otherwise started, this work is the original work of the author. Signed……………………………………. Karla Belén Jaramillo Aguilar Date: 20/12/2019 ACKNOWLEDGMENTS Finally, I have arrived at the final step of this long journey, not only counting the years invested in my PhD studies but also since the beginning of my career as a Marine Biologist. Today I feel very grateful to the life for giving me the opportunity to achieve my childhood dreams of one day become a researcher of the marine life in the oceans. -
Cembrane Derivatives from the Soft Corals, Sinularia Gaweli and Sinularia Flexibilis
Mar. Drugs 2013, 11, 2154-2167; doi:10.3390/md11062154 OPEN ACCESS Marine Drugs ISSN 1660-3397 www.mdpi.com/journal/marinedrugs Article Cembrane Derivatives from the Soft Corals, Sinularia gaweli and Sinularia flexibilis Li-Chung Hu 1,2,†, Wei-Hsuan Yen 1,2,†, Jui-Hsin Su 1,2, Michael Yen-Nan Chiang 3, Zhi-Hong Wen 4, Wu-Fu Chen 5, Ting-Jang Lu 6, Yu-Wei Chang 7, Yung-Husan Chen 2, Wei-Hsien Wang 2,4, Yang-Chang Wu 8,9,10,* and Ping-Jyun Sung 1,2,4,11,* 1 Graduate Institute of Marine Biotechnology and Department of Life Science and Institute of Biotechnology, National Dong Hwa University, Pingtung 944, Taiwan; E-Mails: [email protected] (L.-C.H.); [email protected] (W.-H.Y.); [email protected] (J.-H.S.) 2 National Museum of Marine Biology and Aquarium, Pingtung 944, Taiwan; E-Mails: [email protected] (Y.-H.C.); [email protected] (W.-H.W.) 3 Department of Chemistry, National Sun Yat-sen University, Kaohsiung 804, Taiwan; E-Mail: [email protected] 4 Department of Marine Biotechnology and Resources and Asia-Pacific Ocean Research Center, National Sun Yat-sen University, Kaohsiung 804, Taiwan; E-Mail: [email protected] 5 Department of Neurosurgery, Kaohsiung Chang Gung Memorial Hospital and Chang Gung University College of Medicine, Kaohsiung 833, Taiwan; E-Mail: [email protected] 6 Graduate Institute of Food Science and Technology, National Taiwan University, Taipei 106, Taiwan; E-Mail: [email protected] 7 Department of Food Science, National Taiwan Ocean University, Keelung 202, Taiwan; E-Mail: [email protected] 8 School of Pharmacy, College of Pharmacy, China Medical University, Taichung 404, Taiwan 9 Chinese Medicine Research and Development Center, China Medical University Hospital, Taichung 404, Taiwan 10 Center for Molecular Medicine, China Medical University Hospital, Taichung 404, Taiwan 11 Graduate Institute of Natural Products, Kaohsiung Medical University, Kaohsiung 807, Taiwan † These authors contributed equally to this work. -
Cell Cultures from the Symbiotic Soft Coral Sinularia Flexibilis
Downloaded from orbit.dtu.dk on: Oct 03, 2021 Cell cultures from the symbiotic soft coral Sinularia flexibilis Khalesi, Mohammad K.; Jiménez, Natalia Ivonne Vera; Aanen, D. K.; Beeftink, H. H.; Wijffels, R. H. Published in: In Vitro Cellular & Developmental Biology - Animal Link to article, DOI: 10.1007/s11626-008-9128-7 Publication date: 2008 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Khalesi, M. K., Jiménez, N. I. V., Aanen, D. K., Beeftink, H. H., & Wijffels, R. H. (2008). Cell cultures from the symbiotic soft coral Sinularia flexibilis. In Vitro Cellular & Developmental Biology - Animal, 44(8-9), 330-338. https://doi.org/10.1007/s11626-008-9128-7 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. In Vitro Cell.Dev.Biol.—Animal (2008) 44:330–338 DOI 10.1007/s11626-008-9128-7 Cell cultures from the symbiotic soft coral Sinularia flexibilis Mohammad K. -
Marine Biodiversity Survey Final Report
MARINE BIODIVERSITY SURVEY FINAL REPORT A CEPA-JICA PROJECT ON BIODIVERSITY CONSERVATION THROUGH IMPLEMENTATION OF THE PNG POLICY ON PROTECTED AREAS APRIL 2018 Prepared by the Centre for Biodiversity and Natural Products, University of Papua New Guinea Contents EXECUTIVE SUMMARY..................................................................................................................................... 1 CHAPTER 1. MARINE BIODIVERSITY SURVEY OVERVIEW ................................................................................ 5 Introduction ................................................................................................................................................. 5 Sites description .......................................................................................................................................... 6 Geographical Location ............................................................................................................................. 6 Geology .................................................................................................................................................... 7 Marine Environment ............................................................................................................................... 8 Climate..................................................................................................................................................... 8 Vegetation ..............................................................................................................................................