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Neoproterozoic Origin and Multiple Transitions to Macroscopic Growth in Green Seaweeds
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds Andrea Del Cortonaa,b,c,d,1, Christopher J. Jacksone, François Bucchinib,c, Michiel Van Belb,c, Sofie D’hondta, f g h i,j,k e Pavel Skaloud , Charles F. Delwiche , Andrew H. Knoll , John A. Raven , Heroen Verbruggen , Klaas Vandepoeleb,c,d,1,2, Olivier De Clercka,1,2, and Frederik Leliaerta,l,1,2 aDepartment of Biology, Phycology Research Group, Ghent University, 9000 Ghent, Belgium; bDepartment of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Zwijnaarde, Belgium; cVlaams Instituut voor Biotechnologie Center for Plant Systems Biology, 9052 Zwijnaarde, Belgium; dBioinformatics Institute Ghent, Ghent University, 9052 Zwijnaarde, Belgium; eSchool of Biosciences, University of Melbourne, Melbourne, VIC 3010, Australia; fDepartment of Botany, Faculty of Science, Charles University, CZ-12800 Prague 2, Czech Republic; gDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742; hDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138; iDivision of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee DD2 5DA, United Kingdom; jSchool of Biological Sciences, University of Western Australia, WA 6009, Australia; kClimate Change Cluster, University of Technology, Ultimo, NSW 2006, Australia; and lMeise Botanic Garden, 1860 Meise, Belgium Edited by Pamela S. Soltis, University of Florida, Gainesville, FL, and approved December 13, 2019 (received for review June 11, 2019) The Neoproterozoic Era records the transition from a largely clear interpretation of how many times and when green seaweeds bacterial to a predominantly eukaryotic phototrophic world, creat- emerged from unicellular ancestors (8). ing the foundation for the complex benthic ecosystems that have There is general consensus that an early split in the evolution sustained Metazoa from the Ediacaran Period onward. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
2004 University of Connecticut Storrs, CT
Welcome Note and Information from the Co-Conveners We hope you will enjoy the NEAS 2004 meeting at the scenic Avery Point Campus of the University of Connecticut in Groton, CT. The last time that we assembled at The University of Connecticut was during the formative years of NEAS (12th Northeast Algal Symposium in 1973). Both NEAS and The University have come along way. These meetings will offer oral and poster presentations by students and faculty on a wide variety of phycological topics, as well as student poster and paper awards. We extend a warm welcome to all of our student members. The Executive Committee of NEAS has extended dormitory lodging at Project Oceanology gratis to all student members of the Society. We believe this shows NEAS members’ pride in and our commitment to our student members. This year we will be honoring Professor Arthur C. Mathieson as the Honorary Chair of the 43rd Northeast Algal Symposium. Art arrived with his wife, Myla, at the University of New Hampshire in 1965 from California. Art is a Professor of Botany and a Faculty in Residence at the Jackson Estuarine Laboratory of the University of New Hampshire. He received his Bachelor of Science and Master’s Degrees at the University of California, Los Angeles. In 1965 he received his doctoral degree from the University of British Columbia, Vancouver, Canada. Over a 43-year career Art has supervised many undergraduate and graduate students studying the ecology, systematics and mariculture of benthic marine algae. He has been an aquanaut-scientist for the Tektite II and also for the FLARE submersible programs. -
Neoproterozoic Origin and Multiple Transitions to Macroscopic Growth in Green Seaweeds
bioRxiv preprint doi: https://doi.org/10.1101/668475; this version posted June 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds Andrea Del Cortonaa,b,c,d,1, Christopher J. Jacksone, François Bucchinib,c, Michiel Van Belb,c, Sofie D’hondta, Pavel Škaloudf, Charles F. Delwicheg, Andrew H. Knollh, John A. Raveni,j,k, Heroen Verbruggene, Klaas Vandepoeleb,c,d,1,2, Olivier De Clercka,1,2 Frederik Leliaerta,l,1,2 aDepartment of Biology, Phycology Research Group, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium bDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium cVIB Center for Plant Systems Biology, Technologiepark 71, 9052 Zwijnaarde, Belgium dBioinformatics Institute Ghent, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium eSchool of Biosciences, University of Melbourne, Melbourne, Victoria, Australia fDepartment of Botany, Faculty of Science, Charles University, Benátská 2, CZ-12800 Prague 2, Czech Republic gDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA hDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138, USA. iDivision of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee, DD2 5DA, UK jSchool of Biological Sciences, University of Western Australia (M048), 35 Stirling Highway, WA 6009, Australia kClimate Change Cluster, University of Technology, Ultimo, NSW 2006, Australia lMeise Botanic Garden, Nieuwelaan 38, 1860 Meise, Belgium 1To whom correspondence may be addressed. Email [email protected], [email protected], [email protected] or [email protected]. -
New Records of Marine Algae from the 1974 R /V Dobbin Cruise to the Gulf of California
SMITHSONIAN CONTRIBUTIONS TO BOTANY NUMBER 34 New Records of Marine Algae from the 1974 R /V Dobbin Cruise to the Gulf of California James N. Norris and Xatina E. Bucher SMITHSONIAN INSTITUTION PRESS City of Washington 1976 ABSTRACT Norris, J. N., and K. E. Bucher. New Records of Marine Algae from the 1974 R/V Dolphin Cruise to the Gulf of California. Smithsonian Contributions to Botany, number 34, 22 pages, 13 figures, 1976.-Six species of benthic marine algae (one Chlorophyta, two Phaeophyta, and three Rhodophyta) are newly reported from the Gulf of California, hfexico. Species of Halicystis, Sporochnus, Bonnemaisonia, Dudresnnya, and Sebdenia represent genera new to the Gulf, with the last being new to North America. The distribu~ionof twelve other species is extended. Two new nomenclatural combinations, Dasya bailloziviana var. nudicaulus and Dasya baillouviana var, stanfordiana, are proposed. The morphological variation of some species is discussed. Spermatangia of Dudresnnya colombiana, and tetrasporangia and spermatangia of Kallymenia pertusa are re- ported and described for the first time. OFFICIALPUBLICATION DATE is handstam ed in a limited number of initial copies and is recorded in the Institution's annual report, Srnit!sonian Year. SERIESCOVER DESIGN: Leaf clearing from the katsura tree Cercidiphyllum japonicum Siebold and Zuccarini. Library of Congress Cataloging in Publication Data Norris, James N. New records of marine algae from the 1974 R/V Dolphin cruise to the Gulf of California. (Smithsonian contributions to botany ; no. 34) Bibliography: p. 1. Marine algae-California, Gulf of. 2. R/V Dolphin (Ship) I. Bucher, Katina E., joint author. 11. Title 111. -
SPECIAL PUBLICATION 6 the Effects of Marine Debris Caused by the Great Japan Tsunami of 2011
PICES SPECIAL PUBLICATION 6 The Effects of Marine Debris Caused by the Great Japan Tsunami of 2011 Editors: Cathryn Clarke Murray, Thomas W. Therriault, Hideaki Maki, and Nancy Wallace Authors: Stephen Ambagis, Rebecca Barnard, Alexander Bychkov, Deborah A. Carlton, James T. Carlton, Miguel Castrence, Andrew Chang, John W. Chapman, Anne Chung, Kristine Davidson, Ruth DiMaria, Jonathan B. Geller, Reva Gillman, Jan Hafner, Gayle I. Hansen, Takeaki Hanyuda, Stacey Havard, Hirofumi Hinata, Vanessa Hodes, Atsuhiko Isobe, Shin’ichiro Kako, Masafumi Kamachi, Tomoya Kataoka, Hisatsugu Kato, Hiroshi Kawai, Erica Keppel, Kristen Larson, Lauran Liggan, Sandra Lindstrom, Sherry Lippiatt, Katrina Lohan, Amy MacFadyen, Hideaki Maki, Michelle Marraffini, Nikolai Maximenko, Megan I. McCuller, Amber Meadows, Jessica A. Miller, Kirsten Moy, Cathryn Clarke Murray, Brian Neilson, Jocelyn C. Nelson, Katherine Newcomer, Michio Otani, Gregory M. Ruiz, Danielle Scriven, Brian P. Steves, Thomas W. Therriault, Brianna Tracy, Nancy C. Treneman, Nancy Wallace, and Taichi Yonezawa. Technical Editor: Rosalie Rutka Please cite this publication as: The views expressed in this volume are those of the participating scientists. Contributions were edited for Clarke Murray, C., Therriault, T.W., Maki, H., and Wallace, N. brevity, relevance, language, and style and any errors that [Eds.] 2019. The Effects of Marine Debris Caused by the were introduced were done so inadvertently. Great Japan Tsunami of 2011, PICES Special Publication 6, 278 pp. Published by: Project Designer: North Pacific Marine Science Organization (PICES) Lori Waters, Waters Biomedical Communications c/o Institute of Ocean Sciences Victoria, BC, Canada P.O. Box 6000, Sidney, BC, Canada V8L 4B2 Feedback: www.pices.int Comments on this volume are welcome and can be sent This publication is based on a report submitted to the via email to: [email protected] Ministry of the Environment, Government of Japan, in June 2017. -
Finding of Alien Brown Macroalgae Chorda Tomentosa Lyngb. in the Ukrainian Black Sea Coast
J. Black Sea/Mediterranean Environment Vol. 21, No. 2: 227-231 (2015) SHORT COMMUNICATION Finding of alien brown macroalgae Chorda tomentosa Lyngb. in the Ukrainian Black Sea coast Galina Minicheva Institute of Marine Biology, National Academy of Sciences of Ukraine, 37 Pushkinskaya St., Odessa 65011, UKRAINE Corresponding author: [email protected] Abstract Brown algae Chorda tomentosa Lyngb. 1819, representative of order Laminariales Mig. 1909, was found in the north-western part of the Black Sea (Ukraine, Odessa Bay, Cape Bolshoi Fontan) in spring 2015. This is a new invasive species in the Black Sea ecosystem and the only representative of brown laminarian algae. Ecological activity of this species is 82.2±4.3 m2·kg-1, that corresponds to the nutrient level of the area where it was found. Keywords : Chorda tomentosa, alien (biological invasion, non-indigenous species), Black Sea, Ukraine Development of sporophytic phase of brown algae Chorda tomentosa (genus Chorda, family Chordaceae, order Laminariales, class Phaeophyceae, subclass Fucophycidae, division Ochrophyta) (http://www.algaebase.org) was found on April 30, 2015 in the Cape Bolshoi Fontan (north-western Black Sea, Ukraine, Odessa Bay: 46° 22.469 N, 30° 45.249 E) during underwater survey on the sandy and shelly substratum at the depth of 5–8 m and temperature of 9оС (Figure 1). Identification of the species was performed taking into account the fact that the genus Chorda contains only two species – C. filum (L.) Lam. and C. tomentosa Lyngb. (Boldumanu 1990). The first one has «naked» thallus, while C. tomentosa has much fibrils between one-celled sporothecae and paraphyses; the fibrils have the same diameter all along their lengths. -
Benthic Marine Algae on Japanese Tsunami Marine Debris – a Morphological Documentation of the Species
Benthic Marine Algae on Japanese Tsunami Marine Debris – a morphological documentation of the species Gayle I. Hansen ([email protected]), Oregon State University, USA With DNA determinations by Takeaki Hanyuda ([email protected]) & Hiroshi Kawai ([email protected]), Kobe University, Japan Copyright: 2017, CC BY-NC (attribution, non-commercial use). For photographs, please credit G.I. Hansen or those noted on the pictures. Printing: For better pdf printing, please reduce to letter (11” x 8.5”) size, landscape orientation. Citations to be used for this series: Hansen, G.I., Hanyuda, T. & Kawai, H. (2017). Benthic marine algae on Japanese tsunami marine debris – a morphological documentation of the species. Part 1 – The tsunami event, the project overview, and the red algae. OSU Scholars Archive, Corvallis, pp. 1-50. http://dx.doi.org/10.5399/osu/1110 Hansen, G.I., Hanyuda, T. & Kawai, H. (2017). Benthic marine algae on Japanese tsunami marine debris – a morphological documentation of the species. Part 2. The brown algae. OSU Scholars Archive, Corvallis, pp. 1-61. http://dx.doi.org/10.5399/osu/1111 Hansen, G.I., Hanyuda, T. & Kawai, H. (2017). Benthic marine algae on Japanese tsunami marine debris – a morphological documentation of the species. Part 3. The green algae and cyanobacteria. OSU Scholars Archive, Corvallis. pp. 1-43. http://dx.doi.org/10.5399/osu/1112 Other publications supported: The Scholars Archive presentations above provide photographic documentation for the species included in the following publications. The poster is a pictorial overview of some of the larger debris algae made for teaching. -
Juvenile Morphology of the Large Antarctic Canopy-Forming Brown
Polar Biology https://doi.org/10.1007/s00300-019-02584-3 ORIGINAL PAPER Juvenile morphology of the large Antarctic canopy‑forming brown alga, Desmarestia menziesii J. Agardh Frithjof C. Küpper1 · Charles D. Amsler2 · Simon Morley3 · Bruno de Reviers4 · Aurelia Reichardt3 · Lloyd S. Peck3 · Akira F. Peters1,5 Received: 22 May 2019 / Revised: 31 August 2019 / Accepted: 4 September 2019 © The Author(s) 2019 Abstract For many types of seaweeds in Polar Regions, open questions remain about how their life cycle contributes to their overall adaptation to the extreme abiotic environment. This applies in particular to the major canopy-forming brown algae in much of the Antarctic Peninsula of the genus Desmarestia, which was investigated here. Diving surveys around Rothera Research Station (Adelaide Island, Antarctica) during December 2017–February 2018 revealed the widespread presence of a hitherto- unknown life form of Desmarestia sp. of a tender, feather-like morphology. Further studies explored whether this could be (1) a new, hitherto undescribed Desmarestia species (2) a new record for the region of a known Desmarestia species previously recorded elsewhere or (3) a so-far unknown life form of a species recorded for the region. Collections enabled the extraction of PCR-friendly DNA and sequencing of ITS1, which unambiguously showed that the samples belonged to Desmarestia menziesii, the only Desmarestia species presently recorded for the Adelaide Island/Marguerite Bay region. The presence of the juvenile morphology was subsequently confrmed throughout much of the natural range of D. menziesii during cruise-based diving surveys along the Western Antarctic Peninsula in 2019 and from collections at Anvers Island in 1989. -
And Desmarestia Viridis
Curr Genet (2006) 49: 47–58 DOI 10.1007/s00294-005-0031-4 RESEARCH ARTICLE Marie-Pierre Oudot-Le Secq Æ Susan Loiseaux-de Goe¨r Wytze T. Stam Æ Jeanine L. Olsen Complete mitochondrial genomes of the three brown algae (Heterokonta: Phaeophyceae) Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis Received: 8 August 2005 / Revised: 21 September 2005 / Accepted: 25 September 2005 / Published online: 30 November 2005 Ó Springer-Verlag 2005 Abstract We report the complete mitochondrial se- the base. Results support both multiple primary and quences of three brown algae (Dictyota dichotoma, Fucus multiple secondary acquisitions of plastids. vesiculosus and Desmarestia viridis) belonging to three phaeophycean lineages. They have circular mapping Keywords Brown algae Æ Evolution of mitochondria Æ organization and contain almost the same set of mito- Stramenopiles Æ Mitochondrial DNA Æ chondrial genes, despite their size differences (31,617, Secondary plastids 36,392 and 39,049 bp, respectively). These include the genes for three rRNAs (23S, 16S and 5S), 25–26 tRNAs, Abbreviation Mt: Mitochondrial 35 known mitochondrial proteins and 3–4 ORFs. This gene set complements two previously studied brown al- gal mtDNAs, Pylaiella littoralis and Laminaria digitata. Introduction Exceptions to the very similar overall organization in- clude the displacement of orfs, tRNA genes and four The stramenopiles (section Heterokonta) encompass protein-coding genes found at different locations in the both unicellular, e.g., the Bacillariophyceae (diatoms), D. dichotoma mitochondrial genome. We present a and multicellular lineages, e.g., the Phaeophyceae phylogenetic analysis based on ten concatenated genes (brown algae). They also comprise both heterotrophic (7,479 nucleotides) and 29 taxa. -
A Revised Classification of the Jumping Plant-Lice (Hemiptera: Psylloidea)
Zootaxa 3509: 1–34 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2012 · Magnolia Press Article ISSN 1175-5334 (online edition) urn:lsid:zoobank.org:pub:16A98DD0-D7C4-4302-A3B7-64C57768A045 A revised classification of the jumping plant-lice (Hemiptera: Psylloidea) DANIEL BURCKHARDT1 & DAVID OUVRARD2 1Naturhistorisches Museum, Augustinergasse 2, CH-4001 Basel, Switzerland. E-mail: [email protected] 2Department of Life Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK. E-mail: [email protected] Abstract A revised classification for the world jumping plant-lice (Hemiptera: Psylloidea) is presented comprising all published family and genus-group names. The new classification consists of eight families: Aphalaridae, Carsidaridae, Calophy- idae, Homotomidae, Liviidae, Phacopteronidae, Psyllidae and Triozidae. The Aphalaridae, Liviidae and Psyllidae are redefined, 20 family-group names as well as 28 genus-group names are synonymised, and one replacement name is proposed [Sureaca nomen nov., for Acaerus Loginova, 1976]. Forty two new species combinations are proposed re- sulting from new genus-group synonymies and a replacement name. One subfamily and three genera are considered taxa incertae sedis, and one genus a nomen dubium. Finally eight unavailable names are listed (one family-group and seven genus-group names). Key words: Psyllids, classification, diagnosis, systematics, taxonomy, new taxa, synonymy. Introduction Jumping plant-lice have lately shifted into general awareness as vectors of serious plant diseases, as economically important pests in agriculture and forestry and as potential control organisms of exotic invasive plants. Diaphorina citri Kuwayama which transmits the causal agent of huanglongbing (HLB, greening disease) is considered today the most serious citrus pest in Asia and America (Bonani et al., 2009; de Leon et al., 2011; Tiwari et al., 2011). -
Complex Phylogenetic Distribution of a Non-Canonical Genetic Code In
Cocquyt et al. BMC Evolutionary Biology 2010, 10:327 http://www.biomedcentral.com/1471-2148/10/327 RESEARCH ARTICLE Open Access Complex phylogenetic distribution of a non- canonical genetic code in green algae Ellen Cocquyt1*, Gillian H Gile2, Frederik Leliaert1, Heroen Verbruggen1, Patrick J Keeling2, Olivier De Clerck1 Abstract Background: A non-canonical nuclear genetic code, in which TAG and TAA have been reassigned from stop codons to glutamine, has evolved independently in several eukaryotic lineages, including the ulvophycean green algal orders Dasycladales and Cladophorales. To study the phylogenetic distribution of the standard and non- canonical genetic codes, we generated sequence data of a representative set of ulvophycean green algae and used a robust green algal phylogeny to evaluate different evolutionary scenarios that may account for the origin of the non-canonical code. Results: This study demonstrates that the Dasycladales and Cladophorales share this alternative genetic code with the related order Trentepohliales and the genus Blastophysa, but not with the Bryopsidales, which is sister to the Dasycladales. This complex phylogenetic distribution whereby all but one representative of a single natural lineage possesses an identical deviant genetic code is unique. Conclusions: We compare different evolutionary scenarios for the complex phylogenetic distribution of this non- canonical genetic code. A single transition to the non-canonical code followed by a reversal to the canonical code in the Bryopsidales is highly improbable due to the profound genetic changes that coincide with codon reassignment. Multiple independent gains of the non-canonical code, as hypothesized for ciliates, are also unlikely because the same deviant code has evolved in all lineages.