STUDIES on MOLECULAR GENETIC DIVERSITY and USEFUL GENOMIC TRAITS of YAM ( DIOSCOREA SPP) GERMPLASM COLLECTIONS from ETHIOPIA

Total Page:16

File Type:pdf, Size:1020Kb

STUDIES on MOLECULAR GENETIC DIVERSITY and USEFUL GENOMIC TRAITS of YAM ( DIOSCOREA SPP) GERMPLASM COLLECTIONS from ETHIOPIA STUDIES ON MOLECULAR GENETIC DIVERSITY and USEFUL GENOMIC TRAITS of YAM (DIOSCOREA SPP) GERMPLASM COLLECTIONS FROM ETHIOPIA A THESIS SUBMITTED TO THE SCHOOL OF GRADUATE STUDIES FACULTY OF LIFE SCIENCES ADDIS ABABA UNIVERSITY BY ATNAFUA BEKELE IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE DOCTOR OF PHILOSOPHY (PhD) IN BIOLOGY (APPLIED GENETICS) ADDIS ABABA JUNE 2014 STUDIES ON MOLECULAR GENETIC DIVERSITY and USEFUL GENOMIC TRAITS of YAM (DIOSCOREA SPP) GERMPLASM COLLECTIONS FROM ETHIOPIA A THESIS SUBMITTED TO THE SCHOOL OF GRADUATE STUDIESFACULTY OF LIFE SCIENCES ADDIS ABABA UNIVERSITY BY ATNAFUA BEKELE IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE DOCTOR OF PHILOSOPHY (PhD) IN BIOLOGY (APPLIED GENETICS) SUPERVISOR: - PROF. ENDASHAW BEKELE ADDIS ABABA JUNE 2014 ii DECLARATION I declare that the thesis hereby submitted by me for the Degree Doctor of Philosophy (PhD) in Biology (Applied Genetics) to the School of Graduate Studies of Addis Ababa University is my own independent work and has not previously been submitted by me or anybody else at another university. The materials obtained from other sources have been duly acknowledged in the thesis. Signed on June 2014, The School of Graduate Studies, Faculty of Life Sciences, Addis Ababa University, Arat Kilo. PhD Candidate ____________________________ Atnafua Bekele Supervisor ____________________________ Prof. Endashaw Bekele i Acknowledgments I would like to express my sincere gratitude to my advisor Prof. Endashaw Bekele for his scientific guidance, training, support and valuable comments throughout the period of this research. Because of his professional proficiency, this work is in its present shape. I want to also thank Dr. A. Lopez Montes for accepting me to do part of my molecular research at International Institute of Tropical Agriculture (IITA). I want to express my thanks to Dr. R. Bhattacharjee for her training and support during yam molecular diversity study using SSR markers and PAGE system. I want also to express my appreciation to Mrs. Victoria for her assistance and support during my laboratory work. My thanks also go to Dr. Melaku Gedil and Mr. Gezahegn Girma with his wife Tsega Tsergework for their encouragement, support, providing materials and other aspects during my stay in IITA. My sincere thanks also go to all Bioscience Center staff members, Training and Travel office of IITA, who helped me in one way or the other and made my stay at IITA pleasant. I am also grateful to express my gratitude to Ethiopian Health and Nutrition Research Insititute (EHNRI) who allowed me to do Nutritional Analysis in the laboratory. This research was sponsored by Rural Capacity Building Project (RCBP). I express my thanks to this project for the financial support. I am also grateful to the Faculty of Life Sciences of Addis Ababa University for giving me the chance for this study. My sincere thanks go to all Cellular, Microbial and Molecular Biology Department staffs for their assistance during my study period. Specially, I want to express my gratitude to Dr. Kassahun Tesfaye and Ato Abele Teshome for their help and support during my study ii period. I also express my appreciation to Dr. Kifle Dajen who gave me different types of assistance during my request. I am thankful to yam growing farmers of different regions of SNNPRS, Bako and Hawasa Agricultural Research Center for providing me yam tubers. I appreciate Ato Wondmagej Amenu and Ato Tesfaye Abebe for their careful follow up of the experimental field. My special thanks go to Ato Agdew Bekele, Ato Waga Mazengia, Ato Seyum Getaneh, Ato Tamrat Chisa, Ato Tewodros Mulualem, W/ro Tsehay Mengesha, W/rt Amarech Regasa and W/rt Alem Tsegaye for their help in different issues during my study period. I am also grateful to Southern Agricultural Research Institute for granting me the study leave. All my friends who provided me important advice help and encouragement but fail to name all of them, I want to say thank you so much. The encouragement, love and material support from my family has made anything possible. My mother Mulu Ayalew, my brothers and sisters Habte, Getachew, Elsabet, Admas, Meskerem, Hana, Tesfaye and Workneh I say thank you. May God bless you all!!! Above all, I thank the almighty God for every event of my life!!! iii Dedication To my late father Ato Bekele Damtew and my Daughter Ruth iv Table of Contents Page Declaration--------------------------------------------------------------------------------------------i Acknowledgments----------------------------------------------------------------------------------ii Table of Contents-----------------------------------------------------------------------------------v List of Tables---------------------------------------------------------------------------------------ix List of Figures-------------------------------------------------------------------------------------xiii Acronyms and abbreviations------------------------------------------------------------------xvii Abstract---------------------------------------------------------------------------------------------xix 1. General Introduction --------------------------------------------------------------------------1 2. Literature Review--------------------------------------------------------------------------------7 2.1 Taxonomy and geographical distribution of yam (Dioscorea spp)-----------------------9 2.2 Some yam (Dioscorea species) and their origin-------------------------------------------11 2.3 Cultivation & socio economic importance of yam ( Dioscorea spp)-------------------17 2.4 Yam species in Ethiopia-----------------------------------------------------------------------18 2.5 Previous researches on Ethiopian yam (Dioscorea spp) diversity ---------------------20 2.6 Statement of the problem and objective of the study--------------------------------------24 2.7 Objectives --------------------------------------------------------------------------------------25 2.7.1 General objective of the study--------------------------------------------------------------25 2.7.2 Specific objectives --------------------------------------------------------------------------25 3. Methodology-------------------------------------------------------------------------------------26 3.1. Morphological characterization and yam landraces--------------------------------------26 3.2. Characters evaluated by farmers ------------------------------------------------------------34 3.3. Statistical analysis for morphological characterization ---------------------------------35 3.4. Samples preparation for proximate and minerals content analysis ---------------------35 3.4.1.Moisture determination----------------------------------------------------------------------38 v 3.4.2. Protein determination-----------------------------------------------------------------------38 3.4.3.Fiber determination--------------------------------------------------------------------------39 3.4.4. Fat and minerals determinations ---------------------------------------------------------40 3.5.. Statistical analysis for proximate compositions and mineral contents-----------------------------------------------------------------------------------------41 3.6. Microsatellites (SSR)-------------------------------------------------------------------------42 3.6.1. DNA Extraction -----------------------------------------------------------------------------42 3.6.2. PCR amplification---------------------------------------------------------------------------43 3.6.3. Microsatellite markers and detection of PCR products--------------------------------44 3.6.4. Details of germplasm studied and micro Satellite Primers----------------------------45 3.6.5 Data scoring and statistical data analysis-------------------------------------------------47 3.7. Combined data analysis-----------------------------------------------------------------------49 3.7.1 Combined data sets and statistical data analysis ----------------------------------------49 4. Results--------------------------------------------------------------------------------------------54 4.1 Morphological variability based species identification-----------------------------------55 4.2 Morphological diversity data of yam determined based on cluster analysis-------------------------------------------------------------------60 4.2.1. Principal component analysis-----------------------------------------------------------65 4.3. Proximate and mineral composition of Ethiopian yam (Dioscorea spp)-----------------------------------------------------------------------68 4.3.1. Nutritional value variations among yam ( Dioscorea Species) of Ethiopia-------------------------------------------------------------------------------------68 4.3.1.1. Protein Content (%)-----------------------------------------------------------------------68 vi 4.3.1.2. Fat content (%)----------------------------------------------------------------------------69 4.3.1.3. Fiber (%) content -------------------------------------------------------------------------69 4.3.1.4. Moisture (%) Content--------------------------------------------------------------------70 4.3.1.5. Iron Content (Mg/100g)------------------------------------------------------------------71 4.3.1.6. Ash (%) Content --------------------------------------------------------------------------72 4.3.1.7. Zink content (g/100mg)------------------------------------------------------------------72 4.3.1.8. Calcium content (g/100mg)--------------------------------------------------------------73
Recommended publications
  • Behavior of Various Types of Seeds of Two Species of Yams Tuber (Dioscorea Cayenensis Lam
    International Research Journal of Agricultural Science and Soil Science (ISSN: 2251-0044) Vol. 5(2) pp. 58-66, February 2015 DOI: http:/dx.doi.org/10.14303/irjas.2015.025 Available online http://www.interesjournals.org/IRJAS Copyright © 2015 International Research Journals Full Length Research Paper Behavior of various types of seeds of two species of yams tuber (Dioscorea cayenensis Lam. and Dioscorea rotundata Poir.) in Gabon *Ondo Ovono Paul1, Kevers Claire2, Dommes Jacques2 1Unit of Agrobiology Research, Higher National Institute of Agronomy and Biotechnology, Université des Sciences et Techniques de Masuku, B.P. 941, Masuku, Gabon. 2Plant Molecular Biology and Biotechnology Unit, B-22, University of Liège, Sart Tilman B 22, 4000 Liège, Belgium. Corresponding author’s E-mail: [email protected] Abstract Low multiplication ratio of yam and scarcity of planting materials are major constraints militating against sustainable yam production. In order to evaluate the behavior of the four various types of seeds of two species of yams Dioscorea cayenensis and Dioscorea rotundata, cultivated on the experimental ground of the Higher National Institute of Agronomy and Biotechnology (INSAB), a test was realized in a randomized complete block design with six replications. The samples were cut and three levels of each tuber were used: proximal, medial and distal parts of the tuber. The fragments of tuber and the whole tuber represent the various types of seed used in this work. The results showed significant (P<0.05) differences in number of plants emerged and time of emergence in a mixture of 40% soil and 60% sand three months and half after planting.
    [Show full text]
  • Plant Production--Root Vegetables--Yams Yams
    AU.ENCI FOR INTERNATIONAL DEVILOPME4T FOR AID USE ONLY WASHINGTON. 0 C 20823 A. PRIMARYBIBLIOGRAPHIC INPUT SHEET I. SUBJECT Bbliography Z-AFOO-1587-0000 CL ASSI- 8 SECONDARY FICATIDN Food production and nutrition--Plant production--Root vegetables--Yams 2. TITLE AND SUBTITLE A bibliography of yams and the genus Dioscorea 3. AUTHOR(S) Lawani,S.M.; 0dubanjo,M.0. 4. DOCUMENT DATE IS. NUMBER OF PAGES 6. ARC NUMBER 1976 J 199p. ARC 7. REFERENCE ORGANIZATION NAME AND ADDRESS IITA 8. SUPPLEMENTARY NOTES (Sponaoring Ordanization, Publlahera, Availability) (No annotations) 9. ABSTRACT This bibliography on yams bring together the scattered literature on the genus Dioscorea from the early nineteenth century through 1975. The 1,562 entries in this bibliography are grouped into 36 subject categories, and arranged within each category alphabetically by author. Some entries, particularly those whose titles are not sufficiently informative, are annotated. The major section titles in the book are as follows: general and reference works; history and eography; social and cultural importance; production and economics; botany including taxonomy, genetics, and breeding); yam growing (including fertilizers and plant nutrition); pests and diseases; storage; processing; chemical composition, nutritive value, and utilization; toxic and pharmacologically active constituents; author index; and subject index. Most entries are in English, with a few in French, Spanish, or German. 10. CONTROL NUMBER I1. PRICE OF DOCUMENT PN-AAC-745 IT. DrSCRIPTORS 13. PROJECT NUMBER Sweet potatoes Yams 14. CONTRACT NUMBER AID/ta-G-1251 GTS 15. TYPE OF DOCUMENT AID 590-1 44-741 A BIBLIOGRAPHY OF YAMS AND THE GENUS DIOSCOREA by S.
    [Show full text]
  • Plant Species and Functional Diversity Along Altitudinal Gradients, Southwest Ethiopian Highlands
    Plant Species and Functional Diversity along Altitudinal Gradients, Southwest Ethiopian Highlands Dissertation Zur Erlangung des akademischen Grades Dr. rer. nat. Vorgelegt der Fakultät für Biologie, Chemie und Geowissenschaften der Universität Bayreuth von Herrn Desalegn Wana Dalacho geb. am 08. 08. 1973, Äthiopien Bayreuth, den 27. October 2009 Die vorliegende Arbeit wurde in dem Zeitraum von April 2006 bis October 2009 an der Universität Bayreuth unter der Leitung von Professor Dr. Carl Beierkuhnlein erstellt. Vollständiger Abdruck der von der Fakultät für Biologie, Chemie und Geowissenschaften der Universität Bayreuth zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigten Dissertation. Prüfungsausschuss 1. Prof. Dr. Carl Beierkuhnlein (1. Gutachter) 2. Prof. Dr. Sigrid Liede-Schumann (2. Gutachter) 3. PD. Dr. Gregor Aas (Vorsitz) 4. Prof. Dr. Ludwig Zöller 5. Prof. Dr. Björn Reineking Datum der Einreichung der Dissertation: 27. 10. 2009 Datum des wissenschaftlichen Kolloquiums: 21. 12. 2009 Contents Summary 1 Zusammenfassung 3 Introduction 5 Drivers of Diversity Patterns 5 Deconstruction of Diversity Patterns 9 Threats of Biodiversity Loss in the Ttropics 10 Objectives, Research Questions and Hypotheses 12 Synopsis 15 Thesis Outline 15 Synthesis and Conclusions 17 References 21 Acknowledgments 27 List of Manuscripts and Specification of Own Contribution 30 Manuscript 1 Plant Species and Growth Form Richness along Altitudinal Gradients in the Southwest Ethiopian Highlands 32 Manuscript 2 The Relative Abundance of Plant Functional Types along Environmental Gradients in the Southwest Ethiopian highlands 54 Manuscript 3 Land Use/Land Cover Change in the Southwestern Ethiopian Highlands 84 Manuscript 4 Climate Warming and Tropical Plant Species – Consequences of a Potential Upslope Shift of Isotherms in Southern Ethiopia 102 List of Publications 135 Declaration/Erklärung 136 Summary Summary Understanding how biodiversity is organized across space and time has long been a central focus of ecologists and biogeographers.
    [Show full text]
  • Adaptation of Plants Derived from Cultivated Yam of Dioscorea Cayenensis–D
    Adaptation of plants derived from cultivated yam of Dioscorea cayenensis–D. rotundata complex species seeds germination in two agroecological zones of Benin Assaba Idossou Elie 1, *, Yolou Mounirou 1, Bello Saliou 3, Babalakoun Adonis 1, Tiama Djakaridja 2 and Zoundjihekpon Jeanne 1 1 Laboratory of Ecological Genetics, Department of Genetics and Biotechnologies, Faculty of Science and Technology, University of Abomey–Calavi, (LGE/FAST/UAC), BP 4521 Cotonou, Republic of Benin. 2 Biosciences Laboratory, Genetics and Plant Improvement Team, UFR / SVT, Joseph KI ZERBO University, Ouagadougou, Burkina Faso. 3 Agricultural Research Center of South-Benin, National Agricultural Research Institute of Benin (CRA-Sud/ INRAB). World Journal of Advanced Research and Reviews, 2021, 09(03), 027–041 Publication history: Received on 06 January 2021; revised on 15 February 2021; accepted on 17 February 2021 Article DOI: https://doi.org/10.30574/wjarr.2021.9.3.0019 Abstract Vegetative propagation of plants promotes the accumulation of viruses in plant material; this causes the loss of vigor and consequently the drop of vegetable yield. Keep up productivity level of vegetatively propagated plants; it is therefore important to regenerate genetic material by sexual reproduction to improve the biodiversity. The main objective of this study is to improve yam seeds by sexual way, specifically to assess the response of seedlings from yam seeds in two agroecological areas, area IV (Djougou), in Sudanese climate and area V (Bantè), in transition climate. Seedling were transplanted in this agroecological areas using a completely Randomized design with three replications. Data was analyzed using one way ANOVA at 5% level of significance and a mean comparison test.
    [Show full text]
  • Vegetation Survey of Mount Gorongosa
    VEGETATION SURVEY OF MOUNT GORONGOSA Tom Müller, Anthony Mapaura, Bart Wursten, Christopher Chapano, Petra Ballings & Robin Wild 2008 (published 2012) Occasional Publications in Biodiversity No. 23 VEGETATION SURVEY OF MOUNT GORONGOSA Tom Müller, Anthony Mapaura, Bart Wursten, Christopher Chapano, Petra Ballings & Robin Wild 2008 (published 2012) Occasional Publications in Biodiversity No. 23 Biodiversity Foundation for Africa P.O. Box FM730, Famona, Bulawayo, Zimbabwe Vegetation Survey of Mt Gorongosa, page 2 SUMMARY Mount Gorongosa is a large inselberg almost 700 sq. km in extent in central Mozambique. With a vertical relief of between 900 and 1400 m above the surrounding plain, the highest point is at 1863 m. The mountain consists of a Lower Zone (mainly below 1100 m altitude) containing settlements and over which the natural vegetation cover has been strongly modified by people, and an Upper Zone in which much of the natural vegetation is still well preserved. Both zones are very important to the hydrology of surrounding areas. Immediately adjacent to the mountain lies Gorongosa National Park, one of Mozambique's main conservation areas. A key issue in recent years has been whether and how to incorporate the upper parts of Mount Gorongosa above 700 m altitude into the existing National Park, which is primarily lowland. [These areas were eventually incorporated into the National Park in 2010.] In recent years the unique biodiversity and scenic beauty of Mount Gorongosa have come under severe threat from the destruction of natural vegetation. This is particularly acute as regards moist evergreen forest, the loss of which has accelerated to alarming proportions.
    [Show full text]
  • Sotwp 2016.Pdf
    STATE OF THE WORLD’S PLANTS OF THE WORLD’S STATE 2016 The staff and trustees of the Royal Botanic Gardens, Kew and the Kew Foundation would like to thank the Sfumato Foundation for generously funding the State of the World’s Plants project. State of the World’s Plants 2016 Citation This report should be cited as: RBG Kew (2016). The State of the World’s Plants Report – 2016. Royal Botanic Gardens, Kew ISBN: 978-1-84246-628-5 © The Board of Trustees of the Royal Botanic Gardens, Kew (2016) (unless otherwise stated) Printed on 100% recycled paper The State of the World’s Plants 1 Contents Introduction to the State of the World’s Plants Describing the world’s plants 4 Naming and counting the world’s plants 10 New plant species discovered in 2015 14 Plant evolutionary relationships and plant genomes 18 Useful plants 24 Important plant areas 28 Country focus: status of knowledge of Brazilian plants Global threats to plants 34 Climate change 40 Global land-cover change 46 Invasive species 52 Plant diseases – state of research 58 Extinction risk and threats to plants Policies and international trade 64 CITES and the prevention of illegal trade 70 The Nagoya Protocol on Access to Genetic Resources and Benefit Sharing 76 References 80 Contributors and acknowledgments 2 Introduction to the State of the World’s Plants Introduction to the State of the World’s Plants This is the first document to collate current knowledge on as well as policies and international agreements that are the state of the world’s plants.
    [Show full text]
  • Dictionary of Cultivated Plants and Their Regions of Diversity Second Edition Revised Of: A.C
    Dictionary of cultivated plants and their regions of diversity Second edition revised of: A.C. Zeven and P.M. Zhukovsky, 1975, Dictionary of cultivated plants and their centres of diversity 'N -'\:K 1~ Li Dictionary of cultivated plants and their regions of diversity Excluding most ornamentals, forest trees and lower plants A.C. Zeven andJ.M.J, de Wet K pudoc Centre for Agricultural Publishing and Documentation Wageningen - 1982 ~T—^/-/- /+<>?- •/ CIP-GEGEVENS Zeven, A.C. Dictionary ofcultivate d plants andthei rregion so f diversity: excluding mostornamentals ,fores t treesan d lowerplant s/ A.C .Zeve n andJ.M.J ,d eWet .- Wageninge n : Pudoc. -11 1 Herz,uitg . van:Dictionar y of cultivatedplant s andthei r centreso fdiversit y /A.C .Zeve n andP.M . Zhukovsky, 1975.- Me t index,lit .opg . ISBN 90-220-0785-5 SISO63 2UD C63 3 Trefw.:plantenteelt . ISBN 90-220-0785-5 ©Centre forAgricultura l Publishing and Documentation, Wageningen,1982 . Nopar t of thisboo k mayb e reproduced andpublishe d in any form,b y print, photoprint,microfil m or any othermean swithou t written permission from thepublisher . Contents Preface 7 History of thewor k 8 Origins of agriculture anddomesticatio n ofplant s Cradles of agriculture and regions of diversity 21 1 Chinese-Japanese Region 32 2 Indochinese-IndonesianRegio n 48 3 Australian Region 65 4 Hindustani Region 70 5 Central AsianRegio n 81 6 NearEaster n Region 87 7 Mediterranean Region 103 8 African Region 121 9 European-Siberian Region 148 10 South American Region 164 11 CentralAmerica n andMexica n Region 185 12 NorthAmerica n Region 199 Specieswithou t an identified region 207 References 209 Indexo fbotanica l names 228 Preface The aimo f thiswor k ist ogiv e thereade r quick reference toth e regionso f diversity ofcultivate d plants.Fo r important crops,region so fdiversit y of related wild species areals opresented .Wil d species areofte nusefu l sources of genes to improve thevalu eo fcrops .
    [Show full text]
  • 7870 Levels of Major, Minor and Toxic Metals in Tubers
    Volume 13 No. 3 June 2013 LEVELS OF MAJOR, MINOR AND TOXIC METALS IN TUBERS AND FLOUR OF DIOSCOREA ABYSSINICA GROWN IN ETHIOPIA Aregahegn A1, Chandravanshi BS2* and M Atlabachew3 Bhagwan Singh Chandravanshi *Corresponding author email: [email protected] 1Department of Chemistry, School of Physical Sciences, Dilla University, P.O. Box 419, Ethiopia 2Department of Chemistry, Faculty of Science, Addis Ababa University, P.O. Box 1176, Addis Ababa, Ethiopia 3Department of Chemistry, Faculty of Science, Bahir Dar University, P.O. Box 79, Bahir Dar, Ethiopia. 7870 Volume 13 No. 3 June 2013 ABSTRACT Dioscorea abyssinica, commonly known as yam, is an indigenous plant in Ethiopia. Its root tuber is used as staple and co-staple food in South Nation Nationality People and Regional State of Ethiopia. This study was carried out to analyze the selected mineral nutrients in the tuber and flour of D. abyssinica grown in different parts of the country for human consumption. Samples collected from five different areas were analyzed for eleven metals (Ca, Mg, Fe, Zn, Cu, Mn, Co, Cr Ni, Cd and Pb) by flame atomic absorption spectrometry and two metals (K and Na) by flame emission spectrometry. Known weight of oven-dried sample was wet-digested using 3 mL of (69–72%) HNO3 and 1 mL of (70%) HClO4, for 2 h at variable temperature (120–270 oC). The validity of the optimized procedure was evaluated by the analysis of spiked samples whose recovery was in the range of 92–105%. The mean concentration range (in μg/g) of each metal in D. abyssinica samples were K (8,469–13,914), Na (133– 405), Ca (172–448), Mg (180–354), Fe (28.3–144.5), Mn (12.0–14.5), Zn (12.3– 44.5), Cu (7.26–17.6), Co (1.91–8.68), Cr (0.86–3.41) and Ni (2.43–5.31).
    [Show full text]
  • Aetiology and Ecology of a Yam Mosaic Disease in Burkina Faso C
    ~ Trop. Sci. 1996,36,34-40 Aetiology and ecology of a yam mosaic disease in Burkina Faso C. J. Goudou-Urbino, G. Konate *, J.B. Quìotf and Dubern# LPRC/CIRAD-ORSTOM, Centre CIRAD, BP 5035,34032 Montpellier Cedex 2, France. *INERA, Station de Kambohse, O1BP 476, Ouagadougou, Burkina Faso. +INRA, Lab. Biologie et Pathologie V&g6tale,Place Viala, 34060 Montpellìer Cedex 1, France. $To whom correspondence should be addressed Abstract Yam virus diseases were surveyed for 3 years in Burkina Faso. Mosaic and green vein banding symptoms were observed on two species (Dioscorea cayenensis rotundata and Dioscorea alata) in the southwest and southem areas, and on the Pilimpikou yam cultivar in the central area. Using electron microscopy, ELISA and host range studies, it was found that plants were infected with a potyvirus similar to yam mosaic virus in host range, mor- phology and serology. This virus was not detected in the southern area but occurred at a low rate (13%)in the south-west and more frequently (71.5%)in the central area. Healthy yam plants were exposed to natural infection for 5 months in these two areas and checked for virus contamination by ELISA. Tubers from markets were also checked. During crop growth, in natural conditions, disease contamination was relatively slight compared with that in tubers from markets. The reliability of virus detection methods is discussed. 1% I P Keywords: yam mosaic virus, yam, Burkina Faso, aetiology, ELISA. Introduction Yams (Dioscorea spp., Dioscoreaceae) are staple food crops widely cultivated in tropical areas. The major virus disease is the yam mosaic virus (YMV) described by Thouvenel and Fauquet (1979).
    [Show full text]
  • Aloes and Lilies of Ethiopia and Eritrea
    Aloes and Lilies of Ethiopia and Eritrea Sebsebe Demissew Inger Nordal Aloes and Lilies of Ethiopia and Eritrea Sebsebe Demissew Inger Nordal <PUBLISHER> <COLOPHON PAGE> Front cover: Aloe steudneri Back cover: Kniphofia foliosa Contents Preface 4 Acknowledgements 5 Introduction 7 Key to the families 40 Aloaceae 42 Asphodelaceae 110 Anthericaceae 127 Amaryllidaceae 162 Hyacinthaceae 183 Alliaceae 206 Colchicaceae 210 Iridaceae 223 Hypoxidaceae 260 Eriospermaceae 271 Dracaenaceae 274 Asparagaceae 289 Dioscoreaceae 305 Taccaceae 319 Smilacaceae 321 Velloziaceae 325 List of botanical terms 330 Literature 334 4 ALOES AND LILIES OF ETHIOPIA Preface The publication of a modern Flora of Ethiopia and Eritrea is now completed. One of the major achievements of the Flora is having a complete account of all the Mono­ cotyledons. These are found in Volumes 6 (1997 – all monocots except the grasses) and 7 (1995 – the grasses) of the Flora. One of the main aims of publishing the Flora of Ethiopia and Eritrea was to stimulate further research in the region. This challenge was taken by the authors (with important input also from Odd E. Stabbetorp) in 2003 when the first edition of ‘Flowers of Ethiopia and Eritrea: Aloes and other Lilies’ was published (a book now out of print). The project was supported through the NUFU (Norwegian Council for Higher Education’s Programme for Development Research and Education) funded Project of the University of Oslo, Department of Biology, and Addis Ababa University, National Herbarium in the Biology Department. What you have at hand is a second updated version of ‘Flowers of Ethiopia and Eritrea: Aloes and other Lilies’.
    [Show full text]
  • Relationship Between Wild and Cultivated Yams: Case Study of Yam Domestication in Benin
    Relationship between wild and cultivated yams: Case study of yam domestication in Benin H. Chair1, G. Djedatin2, X. Perrier1, C. Agbangla2 and J.L. Noyer3 1 UR Multiplication végétative, Montpellier, F-34000 France. [email protected] 2 Laboratoire de Génétique, FAST-Université d’Abomey-Calavi, BP 526, Cotonou, Bénin. 3 UMR PIA, Montpellier, F-34000 France Abstract The Dioscorea cayenensis – Dioscorea rotundata species complex is the most widely cultivated yam in West Africa. It has been described as deriving from wild types belonging to the species Dioscorea abyssinica and D. praehensilis from Enanthiophyllum section, through domestication by African farmers. Wild types were chosen on the basis of morphological criteria. In order to translate farmers’ knowledge into standard descriptors and to assess whether domestication has a genetic base or not, 140 accessions of wild types D. abyssinica and D. praehensilis were collected in Benin. They were studied using IPGRI’s yam descriptors, highlighting a continuum between the two species. A structuration of both species into domesticable and non-domesticable yams was observed. Based on 10 nuclear DNA simple sequence repeats (SSR), the molecular characterization leads to separation of D. abyssinica species into domesticable and non-domesticable groups. To establish phylogenetic relationships existing between wild and cultivated species, we investigated changes in chloroplast DNA simple sequence repeats (cpSSR) in a second collection compiled by 148 accessions selected to cover the genetic diversity existing in Benin. Dioscorea cayenensis and D. rotundata shared the same haplotype. The morphotype abyssinica appeared to be subdivided into 3 haplotypes from which one is shared with the D.
    [Show full text]
  • Economic Assessment of Seed-Tuber Practices of Yam Dioscorea Cayenensis and Dioscorea Rotundata Planting Materials
    African Journal of Agricultural Research Vol. 4 (3), pp. 200-207, March 2009 Available online at http://www.academicjournals.org/AJAR ISSN 1991-637X © 2009 Academic Journals Full Length Research Paper Economic assessment of seed-tuber practices of yam Dioscorea cayenensis and Dioscorea rotundata planting materials Afio Zannou Faculté des Sciences Agronomiques, Université d’Abomey-Calavi, 02 BP 1621 Cotonou, Benin. E-mail: [email protected]. Accepted 13 February, 2009 Planting material from different tuber parts (proximal, medial, distal) of four yam (Dioscorea cayenensis and Dioscorea rotundata) varieties (Laboko, Gangni, Alakitcha, Gnanlabo) showed significant differ- ences in number of plants emerged and time of emergence. This result confirms the value of farmer’s variety-specific handling of seed tubers. For three out of these four farmer varieties, there were significant differences in mean value of days after planting to emergence between parts of planting materials used. For all varieties, the proximal parts sprouted earlier than the medium parts and than the distal parts, and the loss was the highest for the distal parts. The rate of emergence is of economic importance in managing yam planting material by farmers. All tubers planted emerged for both the proximal part and the entire tuber of the second harvest. There was a highly significant difference between yield performances. The joint effect of variety and seed type was highly statistically significant in determining the yield obtained by yam farmers in Benin. The marginal benefit was the highest for the proximal part except for Laboko for which the highest benefit was obtained from the use of the second harvest seed-type.
    [Show full text]