Human Recombinant Neuropeptide FF Receptor 2 Stable Cell Line
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
G Protein-Coupled Receptors
S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2015/16: G protein-coupled receptors. British Journal of Pharmacology (2015) 172, 5744–5869 THE CONCISE GUIDE TO PHARMACOLOGY 2015/16: G protein-coupled receptors Stephen PH Alexander1, Anthony P Davenport2, Eamonn Kelly3, Neil Marrion3, John A Peters4, Helen E Benson5, Elena Faccenda5, Adam J Pawson5, Joanna L Sharman5, Christopher Southan5, Jamie A Davies5 and CGTP Collaborators 1School of Biomedical Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK, 2Clinical Pharmacology Unit, University of Cambridge, Cambridge, CB2 0QQ, UK, 3School of Physiology and Pharmacology, University of Bristol, Bristol, BS8 1TD, UK, 4Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK, 5Centre for Integrative Physiology, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2015/16 provides concise overviews of the key properties of over 1750 human drug targets with their pharmacology, plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. The full contents can be found at http://onlinelibrary.wiley.com/doi/ 10.1111/bph.13348/full. G protein-coupled receptors are one of the eight major pharmacological targets into which the Guide is divided, with the others being: ligand-gated ion channels, voltage-gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. -
Rfamide Peptides: Structure, Function, Mechanisms and Pharmaceutical Potential
Pharmaceuticals 2011, 4, 1248-1280; doi:10.3390/ph4091248 OPEN ACCESS Pharmaceuticals ISSN 1424-8247 www.mdpi.com/journal/pharmaceuticals Review RFamide Peptides: Structure, Function, Mechanisms and Pharmaceutical Potential Maria Findeisen †, Daniel Rathmann † and Annette G. Beck-Sickinger * Institute of Biochemistry, Leipzig University, Brüderstraße 34, 04103 Leipzig, Germany; E-Mails: [email protected] (M.F.); [email protected] (D.R.) † These authors contributed equally to this work. * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +49-341-9736900; Fax: +49-341-9736909. Received: 29 August 2011; in revised form: 9 September 2011 / Accepted: 15 September 2011 / Published: 21 September 2011 Abstract: Different neuropeptides, all containing a common carboxy-terminal RFamide sequence, have been characterized as ligands of the RFamide peptide receptor family. Currently, five subgroups have been characterized with respect to their N-terminal sequence and hence cover a wide pattern of biological functions, like important neuroendocrine, behavioral, sensory and automatic functions. The RFamide peptide receptor family represents a multiligand/multireceptor system, as many ligands are recognized by several GPCR subtypes within one family. Multireceptor systems are often susceptible to cross-reactions, as their numerous ligands are frequently closely related. In this review we focus on recent results in the field of structure-activity studies as well as mutational exploration of crucial positions within this GPCR system. The review summarizes the reported peptide analogs and recently developed small molecule ligands (agonists and antagonists) to highlight the current understanding of the pharmacophoric elements, required for affinity and activity at the receptor family. -
Broad Characterization of Endogenous Peptides in the Tree Shrew Visual System
Published in -RXUQDORI3URWHRPLFV ± which should be cited to refer to this work. Broad characterization of endogenous peptides in the tree shrew visual system Vaclav Ranca, b, Filomena Petruzzielloa, Robert Kretza, Enrike G. Argandoñac, Xiaozhe Zhanga,⁎, Gregor Rainera aUniversity of Fribourg, Department of Medicine, Fribourg, Switzerland bPalacky University Olomouc, Department of Analytical Chemistry, Olomouc, Czech Republic cUnit of Anatomy, Department of medicine, University of Fribourg, Fribourg, Switzerland Endogenous neuropeptides, acting as neurotransmitters or hormones in the brain, carry out important functions including neural plasticity, metabolism and angiogenesis. Previous neuropeptide studies have focused on peptide-rich brain regions such as the striatum or hypothalamus. Here we present an investigation of peptides in the visual system, com- posed of brain regions that are generally less rich in peptides, with the aim of providing the first broad overview of peptides involved in mammalian visual functions. We target three important parts of the visual system: the primary visual cortex (V1), lateral geniculate nucleus (LGN) and superior colliculus (SC). Our study is performed in the tree shrew, a close relative of primates. Using a combination of data dependent acquisition and tar- geted LC-MS/MS based neuropeptidomics; we identified a total of 52 peptides from the tree shrew visual system. A total of 26 peptides, for example GAV and neuropeptide K were identified in the visual system for the first time. Out of the total 52 peptides, 27 peptides with high signal-to-noise-ratio (>10) in extracted ion chromatograms (EIC) were subjected to label-free quantitation. We observed generally lower abundance of peptides in the LGN compared to V1 and SC. -
RF313, an Orally Bioavailable Neuropeptide FF Receptor
RF313, an orally bioavailable neuropeptide FF receptor antagonist, opposes effects of RF-amide-related peptide-3 and opioid-induced hyperalgesia in rodents Khadija Elhabazi, Jean-Paul Humbert, Isabelle Bertin, Raphaelle Quillet, Valérie Utard, Martine Schmitt, Jean-Jacques Bourguignon, Emilie Laboureyras, Meric Ben Boujema, Guy Simonnet, et al. To cite this version: Khadija Elhabazi, Jean-Paul Humbert, Isabelle Bertin, Raphaelle Quillet, Valérie Utard, et al.. RF313, an orally bioavailable neuropeptide FF receptor antagonist, opposes effects of RF-amide- related peptide-3 and opioid-induced hyperalgesia in rodents. Neuropsychopharmacology, Nature Publishing Group, 2017, 118, pp.188-198. 10.1016/j.neuropharm.2017.03.012. hal-01603852 HAL Id: hal-01603852 https://hal.archives-ouvertes.fr/hal-01603852 Submitted on 25 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Copyright Accepted Manuscript RF313, an orally bioavailable neuropeptide FF receptor antagonist, opposes effects of RF-amide-related peptide-3 and opioid-induced hyperalgesia in rodents -
Prolactin-Releasing Peptide: Physiological and Pharmacological Properties
International Journal of Molecular Sciences Review Prolactin-Releasing Peptide: Physiological and Pharmacological Properties Veronika Pražienková 1, Andrea Popelová 1, Jaroslav Kuneš 1,2 and Lenka Maletínská 1,* 1 Biochemistry and Molecular Biology, Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences 16610 Prague, Czech Republic; [email protected] (V.P.); [email protected] (A.P.); [email protected] (J.K.) 2 Experimental Hypertension, Institute of Physiology of the Czech Academy of Sciences, 14200 Prague, Czech Republic * Correspondence: [email protected]; Tel.: +420-220-183-567 Received: 2 October 2019; Accepted: 23 October 2019; Published: 24 October 2019 Abstract: Prolactin-releasing peptide (PrRP) belongs to the large RF-amide neuropeptide family with a conserved Arg-Phe-amide motif at the C-terminus. PrRP plays a main role in the regulation of food intake and energy expenditure. This review focuses not only on the physiological functions of PrRP, but also on its pharmacological properties and the actions of its G-protein coupled receptor, GPR10. Special attention is paid to structure-activity relationship studies on PrRP and its analogs as well as to their effect on different physiological functions, mainly their anorexigenic and neuroprotective features and the regulation of the cardiovascular system, pain, and stress. Additionally, the therapeutic potential of this peptide and its analogs is explored. Keywords: prolactin-releasing peptide; GPR10; RF-amide peptides; food intake regulation; energy expenditure; neuroprotection; signaling 1. Introduction There is no doubt that the function of prolactin-releasing peptide (PrRP) in organisms is quite important as its structure is well conserved within different animal species. -
Transcriptomic Changes in Mouse Bone Marrow-Derived Macrophages Exposed to Neuropeptide FF
G C A T T A C G G C A T genes Article Transcriptomic Changes in Mouse Bone Marrow-Derived Macrophages Exposed to Neuropeptide FF Yulong Sun 1,2,* , Yuanyuan Kuang 1,2 and Zhuo Zuo 1,2 1 School of Life Sciences, Northwestern Polytechnical University, Xi’an 710072, China; [email protected] (Y.K.); [email protected] (Z.Z.) 2 Key Laboratory for Space Biosciences & Biotechnology, Institute of Special Environmental Biophysics, School of Life Sciences, Northwestern Polytechnical University, Xi’an 710072, China * Correspondence: [email protected]; Tel.: +86-29-8846-0332 Abstract: Neuropeptide FF (NPFF) is a neuropeptide that regulates various biological activities. Currently, the regulation of NPFF on the immune system is an emerging field. However, the influence of NPFF on the transcriptome of primary macrophages has not been fully elucidated. In this study, the effect of NPFF on the transcriptome of mouse bone marrow-derived macrophages (BMDMs) was explored by RNA sequencing, bioinformatics, and molecular simulation. BMDMs were treated with 1 nM NPFF for 18 h, followed by RNA sequencing. Differentially expressed genes (DEGs) were obtained, followed by GO, KEGG, and PPI analysis. A total of eight qPCR-validated DEGs were selected as hub genes. Subsequently, the three-dimensional (3-D) structures of the eight hub proteins were constructed by Modeller and Rosetta. Next, the molecular dynamics (MD)-optimized 3-D structure of hub protein was acquired with Gromacs. Finally, the binding modes between NPFF and hub proteins were studied by Rosetta. A total of 2655 DEGs were obtained (up-regulated 1442 vs. -
Adenylyl Cyclase 2 Selectively Regulates IL-6 Expression in Human Bronchial Smooth Muscle Cells Amy Sue Bogard University of Tennessee Health Science Center
University of Tennessee Health Science Center UTHSC Digital Commons Theses and Dissertations (ETD) College of Graduate Health Sciences 12-2013 Adenylyl Cyclase 2 Selectively Regulates IL-6 Expression in Human Bronchial Smooth Muscle Cells Amy Sue Bogard University of Tennessee Health Science Center Follow this and additional works at: https://dc.uthsc.edu/dissertations Part of the Medical Cell Biology Commons, and the Medical Molecular Biology Commons Recommended Citation Bogard, Amy Sue , "Adenylyl Cyclase 2 Selectively Regulates IL-6 Expression in Human Bronchial Smooth Muscle Cells" (2013). Theses and Dissertations (ETD). Paper 330. http://dx.doi.org/10.21007/etd.cghs.2013.0029. This Dissertation is brought to you for free and open access by the College of Graduate Health Sciences at UTHSC Digital Commons. It has been accepted for inclusion in Theses and Dissertations (ETD) by an authorized administrator of UTHSC Digital Commons. For more information, please contact [email protected]. Adenylyl Cyclase 2 Selectively Regulates IL-6 Expression in Human Bronchial Smooth Muscle Cells Document Type Dissertation Degree Name Doctor of Philosophy (PhD) Program Biomedical Sciences Track Molecular Therapeutics and Cell Signaling Research Advisor Rennolds Ostrom, Ph.D. Committee Elizabeth Fitzpatrick, Ph.D. Edwards Park, Ph.D. Steven Tavalin, Ph.D. Christopher Waters, Ph.D. DOI 10.21007/etd.cghs.2013.0029 Comments Six month embargo expired June 2014 This dissertation is available at UTHSC Digital Commons: https://dc.uthsc.edu/dissertations/330 Adenylyl Cyclase 2 Selectively Regulates IL-6 Expression in Human Bronchial Smooth Muscle Cells A Dissertation Presented for The Graduate Studies Council The University of Tennessee Health Science Center In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy From The University of Tennessee By Amy Sue Bogard December 2013 Copyright © 2013 by Amy Sue Bogard. -
Computational Studies of Charge in G Protein Coupled Receptors
Computational Studies of Charge in G Protein Coupled Receptors A thesis submitted to the University of Manchester for the degree of MPhil Bioinformatics in the Faculty of Life Sciences 2013 Spyros Charonis Contents Abstract …………………………………………………………………………….. 4 Declaration …………………………………………………………………………. 5 Copyright …………………………………………………………………………... 6 Acknowledgements ………………………………………………………………… 7 Abbreviations ………………………………………………………………………. 8 1 Introduction ………………………………………………………. ………. 9 1.1 Biology in the Silicon Era ………………………………………… 9 1.2 Structural Biology and Bioinformatics ………………………… 10 1.3 G Protein Coupled Receptors …………………………………... 11 1.3.1 GPCR Classification and Nomenclature ………………. 12 1.3.2 Structural modularity of GPCRs ……………………….. 17 1.3.3 GPCR Functional Mechanisms ………………………… 21 1.3.4 GPCRs as Drug Targets ………………………………… 24 1.4 Electrostatics …………………………………………………….. 25 1.4.1 pH and pKa ………………………………………………. 27 1.4.2 pH dependence of charge state for amino acids ………. 29 1.4.3 Electrostatics in Protein Interactions ………………….. 31 1.4.4 Modeling Electrostatics …………………………………. 33 1.4.4.1 Finite Difference Poisson Boltzmann …………... 34 1.4.4.2 Debye-Hückel Theory …………………………… 35 1.5 Bioinformatics Tools and Methodologies ………………………. 37 1.5.1 Sequence Analysis Methods ……………………………... 38 1.5.1.1 BLAST and PSI-BLAST ………………………... 40 1 1.5.2 Structure Prediction ……………………………………. 41 1.5.2.1 Homology Modeling ……………………………. 42 1.5.3 GPCR Information Repositories ………………………. 45 1.6 Aims and Objectives ………………………………………………... 47 2 Methods …………………………………………………………………. 48 2.1 Sequence Analysis Methodologies ……………………………... 48 2.1.1 Detecting Low-Complexity Regions …………………… 48 2.1.2 PSI-BLAST ……………………………………………... 50 2.2 Structural Analysis Methodologies …………………………… 51 2.3 GPCR Dataset Generation ……………………………………... 52 2.4 PDB File Processing ……………………………………............. 53 2.5 pKa Calculations ………………………………………………... 55 2.6 Molecular Visualization ………………………………………... 57 3 Results …………………………………………………………………… 59 3.1 Empirically Defined GPCR Topology ………………………… 59 3.2 GPCR Sequence Dataset ………………………………………. -
G Protein‐Coupled Receptors
S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2019/20: G protein-coupled receptors. British Journal of Pharmacology (2019) 176, S21–S141 THE CONCISE GUIDE TO PHARMACOLOGY 2019/20: G protein-coupled receptors Stephen PH Alexander1 , Arthur Christopoulos2 , Anthony P Davenport3 , Eamonn Kelly4, Alistair Mathie5 , John A Peters6 , Emma L Veale5 ,JaneFArmstrong7 , Elena Faccenda7 ,SimonDHarding7 ,AdamJPawson7 , Joanna L Sharman7 , Christopher Southan7 , Jamie A Davies7 and CGTP Collaborators 1School of Life Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK 2Monash Institute of Pharmaceutical Sciences and Department of Pharmacology, Monash University, Parkville, Victoria 3052, Australia 3Clinical Pharmacology Unit, University of Cambridge, Cambridge, CB2 0QQ, UK 4School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, BS8 1TD, UK 5Medway School of Pharmacy, The Universities of Greenwich and Kent at Medway, Anson Building, Central Avenue, Chatham Maritime, Chatham, Kent, ME4 4TB, UK 6Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK 7Centre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2019/20 is the fourth in this series of biennial publications. The Concise Guide provides concise overviews of the key properties of nearly 1800 human drug targets with an emphasis on selective pharmacology (where available), plus links to the open access knowledgebase source of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. Although the Concise Guide represents approximately 400 pages, the material presented is substantially reduced compared to information and links presented on the website. -
Prediction and Expression Analysis of G Protein-Coupled Receptors in the Laboratory Stick Insect, Carausius Morosus
Turkish Journal of Biology Turk J Biol (2019) 43: 77-88 http://journals.tubitak.gov.tr/biology/ © TÜBİTAK Research Article doi:10.3906/biy-1809-27 Prediction and expression analysis of G protein-coupled receptors in the laboratory stick insect, Carausius morosus 1 1,2, Burçin DUAN ŞAHBAZ , Necla BİRGÜL İYİSON * 1 Department of Molecular Biology and Genetics, Faculty of Arts and Sciences, Boğaziçi University, İstanbul, Turkey 2 Center for Life Sciences and Technologies, Boğaziçi University, İstanbul, Turkey Received: 16.09.2018 Accepted/Published Online: 18.12.2018 Final Version: 07.02.2019 Abstract: G protein-coupled receptors (GPCRs) are 7-transmembrane proteins that transduce various extracellular signals into intracellular pathways. They are the major target of neuropeptides, which regulate the development, feeding behavior, mating behavior, circadian rhythm, and many other physiological functions of insects. In the present study, we performed RNA sequencing and de novo transcriptome assembly to uncover the GPCRs expressed in the stick insect Carausius morosus. The transcript assemblies were predicted for the presence of 7-transmembrane GPCR domains. As a result, 430 putative GPCR transcripts were obtained and 43 of these revealed full-length sequences with highly significant similarity to known GPCR sequences in the databases. Thirteen different GPCRs were chosen for tissue expression analysis. Some of these receptors, such as calcitonin, inotocin, and tyramine receptors, showed specific expression in some of the tissues. Additionally, GPCR prediction yielded a novel uncharacterized GPCR sequence, which was specifically expressed in the central nervous system and ganglia. Previously, the only information about the anatomy of the stick insect was on its gastrointestinal system. -
RT² Profiler PCR Array (384-Well Format) Mouse G Protein Coupled Receptors 384HT
RT² Profiler PCR Array (384-Well Format) Mouse G Protein Coupled Receptors 384HT Cat. no. 330231 PAMM-3009ZE For pathway expression analysis Format For use with the following real-time cyclers RT² Profiler PCR Array, Applied Biosystems® models 7900HT (384-well block), Format E ViiA™ 7 (384-well block); Bio-Rad CFX384™ RT² Profiler PCR Array, Roche® LightCycler® 480 (384-well block) Format G Description The Mouse G Protein Coupled Receptors 384HT RT² Profiler™ PCR Array profiles the expression of a comprehensive panel of 370 genes encoding the most important G Protein Coupled Receptors (GPCR). GPCR regulate a number of normal biological processes and play roles in the pathophysiology of many diseases upon dysregulation of their downstream signal transduction activities. As a result, they represent 30 percent of the targets for all current drug development. Developing drug screening assays requires a survey of which GPCR the chosen cell-based model system expresses, to determine not only the expression of the target GPCR, but also related GPCR to assess off-target side effects. Expression of other unrelated GPCR (even orphan receptors whose ligand are unknown) may also correlate with off-target side effects. The ligands that bind and activate the receptors on this array include neurotransmitters and neuropeptides, hormones, chemokines and cytokines, lipid signaling molecules, light-sensitive compounds, and odorants and pheromones. The normal biological processes regulated by GPCR include, but are not limited to, behavioral and mood regulation (serotonin, dopamine, GABA, glutamate, and other neurotransmitter receptors), autonomic (sympathetic and parasympathetic) nervous system transmission (blood pressure, heart rate, and digestive processes via hormone receptors), inflammation and immune system regulation (chemokine receptors, histamine receptors), vision (opsins like rhodopsin), and smell (olfactory receptors for odorants and vomeronasal receptors for pheromones). -
Phylogenetic Focusing Reveals the Evolution of Eumetazoan Opsins
University of New Hampshire University of New Hampshire Scholars' Repository Master's Theses and Capstones Student Scholarship Winter 2018 Phylogenetic Focusing Reveals the Evolution of Eumetazoan Opsins Curtis Provencher University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/thesis Recommended Citation Provencher, Curtis, "Phylogenetic Focusing Reveals the Evolution of Eumetazoan Opsins" (2018). Master's Theses and Capstones. 1248. https://scholars.unh.edu/thesis/1248 This Thesis is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Master's Theses and Capstones by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. PHYLOGENETIC FOCUSING REVEALS THE EVOLUTION OF EUMETAZOAN OPSINS BY CURTIS PROVENCHER Baccalaureate Degree (BS), University of Vermont, 2016 Submitted to the University of New Hampshire In Partial Fulfillment of The Requirements for the Degree of Master of Science in Genetics December, 2018 ii This thesis/dissertation was examined and approved in partial fulfillment of the requirements for the degree of Master of Science in Genetics by: David Plachetzki, Assistant Professor in Department of Molecular, Cellular, and Biomedical Sciences Matthew MacManes, Assistant Professor in Department of Molecular, Cellular, and Biomedical Sciences Kelley Thomas, Professor in Department of Molecular, Cellular, and Biomedical Sciences On September 20th, 2018 Approval signatures are on file with the University of New Hampshire Graduate School. iii TABLE OF CONTENTS LIST OF TABLES………………………………………………………. iv LIST OF FIGURES……………………………………………………… v ABSTRACT……………………………………………………………... vi CHAPTER PAGE I. INTRODUCTION…………………………………………… 1 II.