Animal Phyla and Plant Divisions
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Rapid Assay Replicate
Algae Analysis Report and Data Set Customer ID: 000 Tracking Code: 200014-000 Sample ID: Rapid Assay Replicate: . Customer ID: 000 Sample Date: 4/30/2020 Sample Level: Epi Job ID: 1 Station: Sample Station Sample Depth: 0 System Name: Sample Lake Site: Sample Site Preservative: Glutaraldehyde Report Notes: Sample Report Note Division: Bacillariophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 1109 Diatoma tenuis . Vegetative 1.00 1000936 Lindavia intermedia . Vegetative 18.00 9123 Nitzschia palea . Vegetative 1.00 1293 Stephanodiscus niagarae . Vegetative 2.00 Summary for Division ~ Bacillariophyta (4 detail records) Sum Total Bacillariophyta 22.00 Division: Chlorophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 2683 *Chlorococcaceae spp . 2-9.9 um Vegetative 1.00 spherical 2491 Schroederia judayi . Vegetative 25.00 Summary for Division ~ Chlorophyta (2 detail records) Sum Total Chlorophyta 26.00 = Identification is Uncertain 200014-000 Monday, January 18, 2021 * = Family Level Identification Phytoplankton - Rapid Assay Page 2 of 13 Division: Cryptophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 3015 Cryptomonas erosa . Vegetative 15.00 3043 Rhodomonas minuta . nannoplanctica . Vegetative 2.00 Summary for Division ~ Cryptophyta (2 detail records) Sum Total Cryptophyta 17.00 Division: Cyanophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 4041 Aphanizomenon flos-aquae . -
8 April 2021 Mr. Jon Kurland Assistant
8 April 2021 Mr. Jon Kurland Assistant Regional Administrator Protected Resources Division, Alaska Region National Marine Fisheries Service P.O. Box 21668 Juneau, Alaska 99082-1668 Dear Mr. Kurland: The Marine Mammal Commission (the Commission), in consultation with its Committee of Scientific Advisors on Marine Mammals, has reviewed the National Marine Fisheries Service’s (NMFS) 8 January 2021 Federal Register notice (86 Fed. Reg. 1452) revising its proposed designation of critical habitat for Arctic ringed seals (Phoca hispida hispida)1 and reopening the comment period on that proposal. The Commission offers the following comments and recommendations. Background On 28 December 2012, NMFS published a final rule listing the Arctic ringed seal as threatened under the Endangered Species Act (ESA) (77 Fed. Reg. 76706) and requesting information on physical and biological features essential to the conservation of Arctic ringed seals and on economic consequences of designating critical habitat for this species. Section 3(5)(A) of the ESA defines “critical habitat” as: (i) the specific areas within the geographical area occupied by the species, at the time it is listed in accordance with section 4 of this Act, on which are found those physical or biological features (I) essential to the conservation of the species and (II) which may require special management considerations or protection; and (ii) specific areas outside the geographical area occupied by the species at the time it is listed in accordance with the provisions of section 4 of this Act, upon a determination by the Secretary that such areas are essential for the conservation of the species. -
"Phylum" for "Division" for Groups Treated As Plants Author(S): H
Proposal (10) to Substitute the Term "Phylum" for "Division" for Groups Treated as Plants Author(s): H. C. Bold, A. Cronquist, C. Jeffrey, L. A. S. Johnson, L. Margulis, H. Merxmüller, P. H. Raven and A. L. Takhtajan Reviewed work(s): Source: Taxon, Vol. 27, No. 1 (Feb., 1978), pp. 121-122 Published by: International Association for Plant Taxonomy (IAPT) Stable URL: http://www.jstor.org/stable/1220504 . Accessed: 15/08/2012 04:49 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp . JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. International Association for Plant Taxonomy (IAPT) is collaborating with JSTOR to digitize, preserve and extend access to Taxon. http://www.jstor.org TAXON 27 (1): 121-132 FEBRUARY 1978 NOMENCLATURE TYPIFICATION OF MICROORGANISMS: A PROPOSAL Ralph A. Lewin * & G. E. Fogg** Rules and recommendations for the typification of many kinds of microorganisms, in- cluding microscopic algae and fungi, need to be updated for a variety of reasons. Improve- ments of fixation techniques normally make it unnecessary to invoke Article 9, Note 1, which relates to "the name of a species of infraspecific taxon of Recent plants of which it is impossible to preserve a specimen..." On the other hand, more and more taxonomy is being based on electron-microscopy, biochemistry, serology or other modern techniques for which living material may be needed, and for which a herbarium sheet is generally inadequate and a drawing, or even a photomicrograph, is for various reasons unsatisfactory. -
Phylogenetic Classification of Life
Proc. Natl. Accad. Sci. USA Vol. 93, pp. 1071-1076, February 1996 Evolution Archaeal- eubacterial mergers in the origin of Eukarya: Phylogenetic classification of life (centriole-kinetosome DNA/Protoctista/kingdom classification/symbiogenesis/archaeprotist) LYNN MARGULIS Department of Biology, University of Massachusetts, Amherst, MA 01003-5810 Conitribluted by Lynnl Marglulis, September 15, 1995 ABSTRACT A symbiosis-based phylogeny leads to a con- these features evolved in their ancestors by inferable steps (4, sistent, useful classification system for all life. "Kingdoms" 20). rRNA gene sequences (Trichomonas, Coronympha, Giar- and "Domains" are replaced by biological names for the most dia; ref. 11) confirm these as descendants of anaerobic eu- inclusive taxa: Prokarya (bacteria) and Eukarya (symbiosis- karyotes that evolved prior to the "crown group" (12)-e.g., derived nucleated organisms). The earliest Eukarya, anaero- animals, fungi, or plants. bic mastigotes, hypothetically originated from permanent If eukaryotes began as motility symbioses between Ar- whole-cell fusion between members of Archaea (e.g., Thermo- chaea-e.g., Thermoplasma acidophilum-like and Eubacteria plasma-like organisms) and of Eubacteria (e.g., Spirochaeta- (Spirochaeta-, Spirosymplokos-, or Diplocalyx-like microbes; like organisms). Molecular biology, life-history, and fossil ref. 4) where cell-genetic integration led to the nucleus- record evidence support the reunification of bacteria as cytoskeletal system that defines eukaryotes (21)-then an Prokarya while -
Plant Evolution an Introduction to the History of Life
Plant Evolution An Introduction to the History of Life KARL J. NIKLAS The University of Chicago Press Chicago and London CONTENTS Preface vii Introduction 1 1 Origins and Early Events 29 2 The Invasion of Land and Air 93 3 Population Genetics, Adaptation, and Evolution 153 4 Development and Evolution 217 5 Speciation and Microevolution 271 6 Macroevolution 325 7 The Evolution of Multicellularity 377 8 Biophysics and Evolution 431 9 Ecology and Evolution 483 Glossary 537 Index 547 v Introduction The unpredictable and the predetermined unfold together to make everything the way it is. It’s how nature creates itself, on every scale, the snowflake and the snowstorm. — TOM STOPPARD, Arcadia, Act 1, Scene 4 (1993) Much has been written about evolution from the perspective of the history and biology of animals, but significantly less has been writ- ten about the evolutionary biology of plants. Zoocentricism in the biological literature is understandable to some extent because we are after all animals and not plants and because our self- interest is not entirely egotistical, since no biologist can deny the fact that animals have played significant and important roles as the actors on the stage of evolution come and go. The nearly romantic fascination with di- nosaurs and what caused their extinction is understandable, even though we should be equally fascinated with the monarchs of the Carboniferous, the tree lycopods and calamites, and with what caused their extinction (fig. 0.1). Yet, it must be understood that plants are as fascinating as animals, and that they are just as important to the study of biology in general and to understanding evolutionary theory in particular. -
Marine-Life Data and Analysis Team (Mdat) Technical Report on the Methods and Development of Marine-Life Data to Support Regional Ocean Planning and Management
MARINE-LIFE DATA AND ANALYSIS TEAM (MDAT) TECHNICAL REPORT ON THE METHODS AND DEVELOPMENT OF MARINE-LIFE DATA TO SUPPORT REGIONAL OCEAN PLANNING AND MANAGEMENT PBS.org NEFSC Andreas Trepte, www.photo-natur.de Authors: Corrie Curtice, Jesse Cleary, Emily Shumchenia, Patrick Halpin Prepared on behalf of The Marine-life Data and Analysis Team (MDAT): Patrick Halpin (Principal Investigator, Duke University), Earvin Balderama (Co-I, Loyola University Chicago), Jesse Cleary (Duke University), Corrie Curtice (Duke University), Michael Fogarty (Co-I, NOAA/NEFSC), Brian Kinlan† (NOAA/NCCOS), Charles Perretti (NOAA/NEFSC), Marta Ribera (TNC), Jason Roberts (Duke University), Emily Shumchenia (NROC), Arliss Winship (Co-I, NOAA/NCCOS) Date published: 24 June 2019 Project manager and point of contact: Jesse Cleary, Marine Geospatial Ecology Lab, Duke University, Durham, NC 27708 em: [email protected] ph: 919-684-3660 w: mgel.env.duke.edu Accessible from: http://seamap.env.duke.edu/models/MDAT/MDAT-Technical- Report.pdf † Deceased January 27, 2017 Marine-life Data and Analysis Team Technical Report EXECUTIVE SUMMARY In 2014, the Marine Geospatial Ecology Lab (MGEL) of Duke University began work with the Northeast Regional Ocean Council (NROC), the NOAA National Centers for Coastal Ocean Science (NCCOS), the NOAA Northeast Fisheries Science Center (NEFSC), and Loyola University Chicago, as part of the Marine-life Data and Analysis Team (MDAT), to characterize and map marine life in the Northeast region, at the request of the Northeast Regional Planning Body (NE RPB) to support the Northeast Ocean Plan. These research groups collaborated to produce “base layer” distribution products for cetacean, avian, and fish species. -
Climate Change Impacts on Net Primary Production (NPP) And
Biogeosciences, 13, 5151–5170, 2016 www.biogeosciences.net/13/5151/2016/ doi:10.5194/bg-13-5151-2016 © Author(s) 2016. CC Attribution 3.0 License. Climate change impacts on net primary production (NPP) and export production (EP) regulated by increasing stratification and phytoplankton community structure in the CMIP5 models Weiwei Fu, James T. Randerson, and J. Keith Moore Department of Earth System Science, University of California, Irvine, California, 92697, USA Correspondence to: Weiwei Fu ([email protected]) Received: 16 June 2015 – Published in Biogeosciences Discuss.: 12 August 2015 Revised: 10 July 2016 – Accepted: 3 August 2016 – Published: 16 September 2016 Abstract. We examine climate change impacts on net pri- the models. Community structure is represented simply in mary production (NPP) and export production (sinking par- the CMIP5 models, and should be expanded to better cap- ticulate flux; EP) with simulations from nine Earth sys- ture the spatial patterns and climate-driven changes in export tem models (ESMs) performed in the framework of the efficiency. fifth phase of the Coupled Model Intercomparison Project (CMIP5). Global NPP and EP are reduced by the end of the century for the intense warming scenario of Representa- tive Concentration Pathway (RCP) 8.5. Relative to the 1990s, 1 Introduction NPP in the 2090s is reduced by 2–16 % and EP by 7–18 %. The models with the largest increases in stratification (and Ocean net primary production (NPP) and particulate or- largest relative declines in NPP and EP) also show the largest ganic carbon export (EP) are key elements of marine bio- positive biases in stratification for the contemporary period, geochemistry that are vulnerable to ongoing climate change suggesting overestimation of climate change impacts on NPP from rising concentrations of atmospheric CO2 and other and EP. -
Kingdom Animalia: Phylum Summary Table
KINGDOM ANIMALIA: PHYLUM SUMMARY TABLE Phylum PORIFERA CNIDARIA PLATYHELMINTHES (flatworms) NEMATODA (roundworms) ANNELIDA (segmented worms) Examples Sponges Sea jellies, Hydra, coral Planaria, tapeworm Trichinella, hookworm, Earthworm, polychaete worms, colonies, sea anemones nematode leech Body type Asymmetry Radial symmetry Bilateral symmetry Bilateral symmetry Bilateral symmetry (Symmetry) Ecological roles Food source Food source Food source Food source Food source home / shelter Reef- home, protect Parasitic Parasitic Parasitic symbiotic with shores Eat dead animals – Aerate soil Aerate soil bacteria Chem. – anticancer saprophyte Breakdown material Breakdown material Body organization 2 germ layers 2 layers: ecto & endo 3 layers: ectoderm, mesoderm, 3 layers: ectoderm, 3 layers: ectoderm, mesoderm, (# germ layers) Ectoderm, endoderm With mesoglea between endoderm mesoderm, endoderm endoderm Body cavity Acoelom Acoelom Acoelom Pseudocoelom Coelom Digestive system Filter feed: collar cells, Gastrovascular cavity, Mouth and gastrovascular Complete digestive Complete digestive system: food vacuoles, mouth, and cavity system: mouth & anus mouth & anus osculum nematocysts to capture food Mouth also serves as anus Special organs Special organs Reproduction Sexual: Sexual: male & female Sexual: hermaphroditic – Sexual: separate sexes = Sexual: hermaphroditic – heramaphroditic – medusa – gametes fuse cross fertilization dioecious cross fertilization gametes released in H2O Asexual: budding, Asexual: fragmentation Asexual: budding, regeneration -
A Review of Phylogenetic Hypotheses Regarding Aphodiinae (Coleoptera; Scarabaeidae)
STATE OF KNOWLEDGE OF DUNG BEETLE PHYLOGENY - a review of phylogenetic hypotheses regarding Aphodiinae (Coleoptera; Scarabaeidae) Mattias Forshage 2002 Examensarbete i biologi 20 p, Ht 2002 Department of Systematic Zoology, Evolutionary Biology Center, Uppsala University Supervisor Fredrik Ronquist Abstract: As a preparation for proper phylogenetic analysis of groups within the coprophagous clade of Scarabaeidae, an overview is presented of all the proposed suprageneric taxa in Aphodiinae. The current knowledge of the affiliations of each group is discussed based on available information on their morphology, biology, biogeography and paleontology, as well as their classification history. With this as a background an attempt is made to estimate the validity of each taxon from a cladistic perspective, suggest possibilities and point out the most important questions for further research in clarifying the phylogeny of the group. The introductory part A) is not a scientific paper but an introduction into the subject intended for the seminar along with a polemic against a fraction of the presently most active workers in the field: Dellacasa, Bordat and Dellacasa. The main part B) is the discussion of all proposed suprageneric taxa in the subfamily from a cladistic viewpoint. The current classification is found to be quite messy and unfortunately a large part of the many recent attempts to revise higher-level classification within the group do not seem to be improvements from a phylogenetic viewpoint. Most recently proposed tribes (as well as -
Fungi-Chapter 31 Refer to the Images of Life Cycles of Rhizopus, Morchella and Mushroom in Your Text Book and Lab Manual
Fungi-Chapter 31 Refer to the images of life cycles of Rhizopus, Morchella and Mushroom in your text book and lab manual. Chytrids Chytrids (phylum Chytridiomycota) are found in terrestrial, freshwater, and marine habitats including hydrothermal vents They can be decomposers, parasites, or mutualists Molecular evidence supports the hypothesis that chytrids diverged early in fungal evolution Chytrids are unique among fungi in having flagellated spores, called zoospores Zygomycetes The zygomycetes (phylum Zygomycota) exhibit great diversity of life histories They include fast-growing molds, parasites, and commensal symbionts The life cycle of black bread mold (Rhizopus stolonifer) is fairly typical of the phylum Its hyphae are coenocytic Asexual sporangia produce haploid spores The zygomycetes are named for their sexually produced zygosporangia Zygosporangia are the site of karyogamy and then meiosis Zygosporangia, which are resistant to freezing and drying, can survive unfavorable conditions Some zygomycetes, such as Pilobolus, can actually “aim” and shoot their sporangia toward bright light Glomeromycetes The glomeromycetes (phylum Glomeromycota) were once considered zygomycetes They are now classified in a separate clade Glomeromycetes form arbuscular mycorrhizae by growing into root cells but covered by host cell membrane. Ascomycetes Ascomycetes (phylum Ascomycota) live in marine, freshwater, and terrestrial habitats Ascomycetes produce sexual spores in saclike asci contained in fruiting bodies called ascocarps Ascomycetes are commonly -
Biology of Fungi, Lecture 2: the Diversity of Fungi and Fungus-Like Organisms
Biology of Fungi, Lecture 2: The Diversity of Fungi and Fungus-Like Organisms Terms You Should Understand u ‘Fungus’ (pl., fungi) is a taxonomic term and does not refer to morphology u ‘Mold’ is a morphological term referring to a filamentous (multicellular) condition u ‘Mildew’ is a term that refers to a particular type of mold u ‘Yeast’ is a morphological term referring to a unicellular condition Special Lecture Notes on Fungal Taxonomy u Fungal taxonomy is constantly in flux u Not one taxonomic scheme will be agreed upon by all mycologists u Classical fungal taxonomy was based primarily upon morphological features u Contemporary fungal taxonomy is based upon phylogenetic relationships Fungi in a Broad Sense u Mycologists have traditionally studied a diverse number of organisms, many not true fungi, but fungal-like in their appearance, physiology, or life style u At one point, these fungal-like microbes included the Actinomycetes, due to their filamentous growth patterns, but today are known as Gram-positive bacteria u The types of organisms mycologists have traditionally studied are now divided based upon phylogenetic relationships u These relationships are: Q Kingdom Fungi - true fungi Q Kingdom Straminipila - “water molds” Q Kingdom Mycetozoa - “slime molds” u Kingdom Fungi (Mycota) Q Phylum: Chytridiomycota Q Phylum: Zygomycota Q Phylum: Glomeromycota Q Phylum: Ascomycota Q Phylum: Basidiomycota Q Form-Phylum: Deuteromycota (Fungi Imperfecti) Page 1 of 16 Biology of Fungi Lecture 2: Diversity of Fungi u Kingdom Straminiplia (Chromista) -
Points of View DIVISION MABINF Mvbb3cebbatb8
Points of View SEFB.1^ Misuse of Generic Names of Shrimp (Family Penaeidae) DIVISION MABINF mVBB3CEBBATB8 CARDED SEP 161959 Reprinted from SYSTEMATIC ZOOLOGY Volume 6, Number 2, June 1957 Points of View Misuse of Generic Names of Shrimp (Family Penaeidae) Misuse of names of the penaeid shrimp of the ligature oe may have been a print- has been going on for well over a hundred er's error, for in many of the older fonts years. The matter is of some importance the a in the ae ligature was script-like and because interest in these shrimp, both therefore easily confused with the oe. zoologically and commercially, is increas- Smith (1871, not 1869 as is commonly ing greatly every year and use of the stated) used Peneus and in the same pa- Latin names in general papers and statis- per described the genus Xiphopeneus. tical reports is increasing commensu- Later when he realized that Peneus was rately. Most authors are non-taxonomists wrong and took up Fabricius' original and follow rather faithfully the erroneous spelling, he recognized that Xiphopeneus spellings of reputedly authoritative works. would have to stand (Smith 1882, 1886). Some of these spellings are wrong for the The doyen of American carcinologists, same reasons other words are sometimes Waldo L. Schmitt, apparently had a simi- spelled wrong. Others are based upon lar experience, for in 1926 he used Peneus, misconceptions. The latter are the more citing Weber as the original authority, but important and are the only ones treated in turned to Penaeus later (Schmitt, 1926, these remarks.